Wall clock time and date at job start Mon Mar 30 2020 06:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00156 * 2 1 4 4 H 1.48495 * 109.47385 * 240.00135 * 3 2 1 5 5 H 1.48503 * 109.47110 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46872 * 120.00092 * 3 2 1 7 7 C 1.37881 * 120.00218 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00179 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99392 * 359.97438 * 7 2 1 10 10 C 1.50703 * 109.46958 * 180.02562 * 9 7 2 11 11 O 1.21287 * 119.99670 * 359.97438 * 10 9 7 12 12 N 1.34775 * 120.00141 * 180.02562 * 10 9 7 13 13 C 1.40044 * 119.99966 * 175.54591 * 12 10 9 14 14 C 1.38805 * 120.07106 * 34.63333 * 13 12 10 15 15 C 1.38252 * 119.93689 * 179.74306 * 14 13 12 16 16 Cl 1.73602 * 119.95307 * 180.23314 * 15 14 13 17 17 C 1.38387 * 120.08841 * 0.53216 * 15 14 13 18 18 C 1.38254 * 120.14300 * 359.72335 * 17 15 14 19 19 C 1.38305 * 120.05968 * 0.02562 * 18 17 15 20 20 F 1.35103 * 120.04664 * 179.97438 * 19 18 17 21 21 H 0.97005 * 120.00131 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47018 * 60.00390 * 9 7 2 23 23 H 1.08997 * 109.47318 * 299.99667 * 9 7 2 24 24 H 0.97001 * 119.99806 * 355.53887 * 12 10 9 25 25 H 1.07994 * 120.02870 * 359.97438 * 14 13 12 26 26 H 1.07997 * 119.92961 * 179.70389 * 17 15 14 27 27 H 1.08004 * 119.97584 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2302 -3.6446 -0.0005 11 8 3.4226 -3.4230 -0.0010 12 7 1.7809 -4.9153 -0.0011 13 6 2.6875 -5.9785 -0.0952 14 6 3.9374 -5.8816 0.5007 15 6 4.8283 -6.9350 0.4105 16 17 6.3893 -6.8167 1.1608 17 6 4.4796 -8.0811 -0.2823 18 6 3.2377 -8.1793 -0.8817 19 6 2.3398 -7.1312 -0.7909 20 9 1.1264 -7.2272 -1.3772 21 1 -0.4850 0.8401 0.0004 22 1 0.6240 -2.5566 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 0.8296 -5.0934 0.0639 25 1 4.2122 -4.9857 1.0374 26 1 5.1793 -8.9005 -0.3552 27 1 2.9682 -9.0751 -1.4214 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258708373.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:46 Heat of formation + Delta-G solvation = -87.597345 kcal Electronic energy + Delta-G solvation = -16113.335703 eV Core-core repulsion = 13003.497755 eV Total energy + Delta-G solvation = -3109.837948 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.036 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.00907 -41.45039 -39.54142 -37.50704 -35.79356 -35.16386 -31.97834 -31.32148 -30.03311 -26.06953 -24.37316 -23.44892 -21.52767 -19.42624 -18.66669 -18.21959 -17.87315 -17.30009 -16.73479 -16.59257 -16.28700 -15.95755 -15.17924 -14.78316 -14.46300 -14.33367 -14.22665 -13.60427 -13.35559 -12.88787 -12.84258 -12.65172 -12.44576 -12.07816 -12.03445 -11.52195 -11.42898 -10.68193 -10.65181 -9.85806 -9.27756 -8.28444 -6.36376 -0.18897 0.02176 1.01634 1.40210 1.42412 1.50884 1.62665 1.99981 2.38905 2.42422 3.04398 3.07647 3.61655 3.95590 3.97036 4.19680 4.32511 4.65445 4.87853 4.96118 5.00989 5.10497 5.17259 5.23367 5.66584 5.73141 5.94401 6.40133 6.75953 7.15934 7.34021 8.83413 Molecular weight = 257.04amu Principal moments of inertia in cm(-1) A = 0.025450 B = 0.005346 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.916745 B = 5236.670903 C = 6225.351234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.013 3.987 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.540 4.540 8 H 0.059 0.941 9 C 0.011 3.989 10 C 0.523 3.477 11 O -0.551 6.551 12 N -0.672 5.672 13 C 0.116 3.884 14 C -0.113 4.113 15 C -0.032 4.032 16 Cl -0.059 7.059 17 C -0.090 4.090 18 C -0.106 4.106 19 C 0.065 3.935 20 F -0.135 7.135 21 H 0.268 0.732 22 H 0.048 0.952 23 H 0.050 0.950 24 H 0.425 0.575 25 H 0.131 0.869 26 H 0.179 0.821 27 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.637 -18.768 -0.282 19.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.187 4.187 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.200 1.200 6 H -0.197 1.197 7 C -0.578 4.578 8 H 0.077 0.923 9 C -0.028 4.028 10 C 0.314 3.686 11 O -0.427 6.427 12 N -0.318 5.318 13 C 0.019 3.981 14 C -0.135 4.135 15 C -0.060 4.060 16 Cl -0.030 7.030 17 C -0.110 4.110 18 C -0.124 4.124 19 C 0.043 3.957 20 F -0.113 7.113 21 H 0.077 0.923 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.263 0.737 25 H 0.149 0.851 26 H 0.197 0.803 27 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 6.373 -18.391 -0.243 19.466 hybrid contribution -0.417 1.181 0.104 1.257 sum 5.956 -17.210 -0.139 18.212 Atomic orbital electron populations 1.70013 1.07146 1.28304 1.50789 1.25767 0.95825 1.02725 0.94340 0.85509 0.78355 0.78299 0.78940 1.19774 1.19956 1.19677 1.21313 0.93802 0.90936 1.51746 0.92289 1.19103 0.94073 0.90125 0.99493 1.21804 0.90469 0.83714 0.72629 1.90533 1.18661 1.84778 1.48747 1.43662 1.10709 1.04030 1.73438 1.17920 0.92470 0.88660 0.99022 1.21018 0.92764 0.99358 1.00332 1.20891 0.88154 0.96119 1.00791 1.98372 1.25555 1.98292 1.80813 1.21232 0.97001 0.96871 0.95854 1.21312 0.91950 0.98586 1.00597 1.17729 0.83483 0.96083 0.98408 1.91498 1.41488 1.96462 1.81868 0.92276 0.93433 0.93183 0.73708 0.85075 0.80318 0.79582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.31 13.29 21.45 0.28 -53.03 15 2 C 0.01 0.71 5.46 84.66 0.46 1.17 15 3 Si 0.96 44.78 29.54 68.60 2.03 46.81 15 4 H -0.27 -12.47 7.11 99.48 0.71 -11.76 15 5 H -0.27 -12.11 7.11 99.48 0.71 -11.40 15 6 H -0.27 -12.39 7.11 99.48 0.71 -11.68 15 7 C -0.54 -31.15 8.92 25.60 0.23 -30.92 15 8 H 0.06 3.55 6.75 -2.91 -0.02 3.53 15 9 C 0.01 0.57 5.46 29.10 0.16 0.73 15 10 C 0.52 23.49 7.67 87.66 0.67 24.16 15 11 O -0.55 -27.88 12.88 -3.05 -0.04 -27.92 15 12 N -0.67 -23.49 5.23 -303.32 -1.59 -25.08 15 13 C 0.12 3.66 6.31 38.16 0.24 3.90 15 14 C -0.11 -3.67 8.48 22.41 0.19 -3.48 15 15 C -0.03 -0.81 6.32 22.31 0.14 -0.67 15 16 Cl -0.06 -1.41 28.95 -2.72 -0.08 -1.49 15 17 C -0.09 -1.61 9.82 22.31 0.22 -1.39 15 18 C -0.11 -1.86 10.02 22.29 0.22 -1.64 15 19 C 0.06 1.63 7.31 22.48 0.16 1.80 15 20 F -0.13 -3.42 16.96 44.97 0.76 -2.65 15 21 H 0.27 14.58 8.31 -92.70 -0.77 13.81 15 22 H 0.05 2.42 8.14 -2.39 -0.02 2.40 15 23 H 0.05 2.52 8.14 -2.39 -0.02 2.50 15 24 H 0.42 12.48 8.67 -92.71 -0.80 11.67 15 25 H 0.13 5.08 6.20 -2.91 -0.02 5.06 15 26 H 0.18 1.87 8.06 -2.91 -0.02 1.85 15 27 H 0.19 1.82 8.06 -2.91 -0.02 1.79 15 Total: -1.00 -66.44 266.26 4.49 -61.94 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 0.42 Total: 7.77 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: 2.70 Total: -6.35 kcal Atomic # 7 Polarization: -76.80 SS G_CDS: -1.30 Total: -78.10 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.04 Total: -27.92 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.76 Total: -2.65 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -0.08 Total: -1.49 kcal Total: -66.44 4.49 -61.94 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258708373.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.654 kcal (2) G-P(sol) polarization free energy of solvation -66.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds