Wall clock time and date at job start Mon Mar 30 2020 07:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38215 * 120.00354 * 2 1 4 4 C 1.38330 * 120.00810 * 180.02562 * 3 2 1 5 5 Cl 1.73599 * 119.98559 * 179.97438 * 4 3 2 6 6 C 1.38373 * 120.02651 * 0.02562 * 4 3 2 7 7 C 1.50709 * 119.99403 * 179.97438 * 6 4 3 8 8 C 1.52998 * 109.46796 * 279.99269 * 7 6 4 9 9 N 1.46498 * 109.47353 * 179.97438 * 8 7 6 10 10 C 1.36936 * 120.00412 * 179.97438 * 9 8 7 11 11 H 1.07998 * 119.99855 * 0.02562 * 10 9 8 12 12 C 1.38812 * 120.00097 * 179.97438 * 10 9 8 13 13 N 1.31621 * 119.99952 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00032 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46914 * 60.00258 * 14 12 10 16 16 H 1.48497 * 109.47011 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47425 * 300.00626 * 14 12 10 18 18 C 1.38167 * 120.01543 * 359.97438 * 6 4 3 19 19 C 1.38430 * 120.00619 * 180.02562 * 2 1 3 20 20 F 1.35095 * 120.01233 * 359.95859 * 19 2 1 21 21 H 1.08997 * 109.47009 * 89.99842 * 1 2 3 22 22 H 1.09002 * 109.47478 * 210.00199 * 1 2 3 23 23 H 1.09002 * 109.47427 * 329.99948 * 1 2 3 24 24 H 1.07999 * 119.99442 * 359.74706 * 3 2 1 25 25 H 1.08994 * 109.47108 * 39.99305 * 7 6 4 26 26 H 1.08997 * 109.47179 * 159.99849 * 7 6 4 27 27 H 1.09000 * 109.47632 * 300.00557 * 8 7 6 28 28 H 1.09007 * 109.46997 * 59.99865 * 8 7 6 29 29 H 0.97004 * 119.99832 * 0.02562 * 9 8 7 30 30 H 0.97001 * 120.00085 * 179.97438 * 13 12 10 31 31 H 1.08000 * 120.00919 * 180.02562 * 18 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1969 0.0000 4 6 3.5814 1.1970 -0.0005 5 17 4.4489 2.7007 -0.0012 6 6 4.2739 -0.0009 -0.0016 7 6 5.7810 0.0000 -0.0028 8 6 6.2897 0.2513 -1.4237 9 7 7.7547 0.2529 -1.4248 10 6 8.4383 0.4592 -2.5933 11 1 7.8974 0.6212 -3.5139 12 6 9.8264 0.4612 -2.5942 13 7 10.4855 0.2643 -1.4721 14 14 10.7589 0.7420 -4.1883 15 1 10.3978 2.0703 -4.7455 16 1 12.2191 0.6966 -3.9220 17 1 10.4010 -0.3182 -5.1645 18 6 3.5841 -1.1980 -0.0016 19 6 2.1992 -1.1988 -0.0005 20 9 1.5241 -2.3689 -0.0002 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3634 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5138 24 1 1.6581 2.1322 -0.0041 25 1 6.1443 0.7873 0.6577 26 1 6.1452 -0.9655 0.3480 27 1 5.9263 -0.5358 -2.0843 28 1 5.9254 1.2169 -1.7746 29 1 8.2405 0.1070 -0.5980 30 1 11.4555 0.2654 -1.4728 31 1 4.1247 -2.1330 -0.0020 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258813942.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:04 Heat of formation + Delta-G solvation = -48.618152 kcal Electronic energy + Delta-G solvation = -16200.939515 eV Core-core repulsion = 13228.624926 eV Total energy + Delta-G solvation = -2972.314588 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.068 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.99236 -40.57930 -37.45386 -37.09327 -35.01552 -33.11665 -31.41345 -30.60856 -27.41949 -25.33247 -24.04475 -23.29190 -21.95522 -19.27902 -18.04021 -17.94352 -17.18167 -16.83823 -16.65331 -15.56112 -15.46897 -15.37573 -15.02174 -14.52092 -14.36970 -13.90556 -13.77133 -13.68561 -13.03497 -12.89452 -12.83145 -12.72066 -12.37001 -12.24514 -12.16001 -11.94337 -11.82638 -11.61768 -10.92596 -9.94953 -9.47304 -9.01186 -7.95116 -5.24615 -0.12104 0.03802 1.12872 1.47501 1.50787 1.56980 2.30220 2.56564 3.08408 3.38398 3.47228 3.61836 3.83340 4.06923 4.18336 4.29367 4.36469 4.44569 4.63222 4.75883 4.76937 4.80098 4.91901 5.02001 5.12731 5.18988 5.23360 5.37828 5.48347 5.69522 6.26695 7.33248 8.06988 8.32027 9.28233 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.030439 B = 0.004640 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.639785 B = 6032.481999 C = 6517.228198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.110 4.110 3 C -0.078 4.078 4 C -0.049 4.049 5 Cl -0.063 7.063 6 C -0.050 4.050 7 C -0.082 4.082 8 C 0.163 3.837 9 N -0.744 5.744 10 C -0.249 4.249 11 H 0.073 0.927 12 C -0.072 4.072 13 N -0.969 5.969 14 Si 0.974 3.026 15 H -0.278 1.278 16 H -0.293 1.293 17 H -0.277 1.277 18 C -0.139 4.139 19 C 0.092 3.908 20 F -0.137 7.137 21 H 0.086 0.914 22 H 0.073 0.927 23 H 0.094 0.906 24 H 0.168 0.832 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.016 0.984 28 H 0.025 0.975 29 H 0.375 0.625 30 H 0.252 0.748 31 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.749 0.591 5.012 22.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.111 4.111 3 C -0.097 4.097 4 C -0.076 4.076 5 Cl -0.034 7.034 6 C -0.052 4.052 7 C -0.120 4.120 8 C 0.036 3.964 9 N -0.387 5.387 10 C -0.380 4.380 11 H 0.091 0.909 12 C -0.265 4.265 13 N -0.619 5.619 14 Si 0.802 3.198 15 H -0.204 1.204 16 H -0.219 1.219 17 H -0.203 1.203 18 C -0.158 4.158 19 C 0.072 3.928 20 F -0.115 7.115 21 H 0.105 0.895 22 H 0.092 0.908 23 H 0.113 0.887 24 H 0.185 0.815 25 H 0.097 0.903 26 H 0.100 0.900 27 H 0.034 0.966 28 H 0.043 0.957 29 H 0.207 0.793 30 H 0.061 0.939 31 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -21.693 0.713 4.828 22.236 hybrid contribution 1.177 -0.110 -0.439 1.261 sum -20.516 0.603 4.389 20.989 Atomic orbital electron populations 1.20819 0.87278 1.04635 1.04035 1.20142 0.98782 0.90441 1.01738 1.21033 0.90761 0.99302 0.98576 1.21023 0.93129 0.87060 1.06412 1.98397 1.76933 1.31297 1.96729 1.19459 0.95721 0.91364 0.98615 1.20673 0.89838 1.03666 0.97783 1.20658 0.83541 0.97834 0.94336 1.42511 1.01260 1.86988 1.07963 1.19571 0.89674 1.40036 0.88744 0.90880 1.25562 0.97274 1.03349 1.00288 1.69808 1.06734 1.58282 1.27091 0.85211 0.77154 0.78253 0.79148 1.20388 1.21916 1.20330 1.21103 0.92556 0.99093 1.03006 1.17641 0.89714 0.81539 1.03859 1.91481 1.80116 1.46037 1.93888 0.89515 0.90808 0.88691 0.81481 0.90329 0.90027 0.96593 0.95721 0.79285 0.93896 0.83194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 9.83 71.23 0.70 -0.68 16 2 C -0.11 -2.10 5.89 -19.83 -0.12 -2.21 16 3 C -0.08 -1.55 9.48 22.29 0.21 -1.34 16 4 C -0.05 -1.27 6.31 22.32 0.14 -1.13 16 5 Cl -0.06 -1.74 26.62 -2.72 -0.07 -1.81 16 6 C -0.05 -1.40 5.14 -19.85 -0.10 -1.51 16 7 C -0.08 -2.73 4.91 29.85 0.15 -2.58 16 8 C 0.16 6.76 6.19 86.38 0.53 7.30 16 9 N -0.74 -38.95 5.60 -343.45 -1.92 -40.87 16 10 C -0.25 -14.25 9.99 84.03 0.84 -13.41 16 11 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 12 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 13 N -0.97 -59.89 13.06 21.65 0.28 -59.61 16 14 Si 0.97 46.63 29.55 68.60 2.03 48.66 16 15 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 16 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 18 C -0.14 -3.49 9.65 22.31 0.22 -3.28 16 19 C 0.09 2.10 7.24 22.37 0.16 2.26 16 20 F -0.14 -3.12 16.48 44.97 0.74 -2.38 16 21 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.07 0.91 7.64 -2.39 -0.02 0.90 16 23 H 0.09 0.80 8.09 -2.39 -0.02 0.78 16 24 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 25 H 0.08 2.68 7.35 -2.39 -0.02 2.67 16 26 H 0.08 2.62 8.00 -2.39 -0.02 2.60 16 27 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.02 1.05 7.26 -2.38 -0.02 1.03 16 29 H 0.38 20.61 7.67 -92.71 -0.71 19.90 16 30 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 31 H 0.15 3.50 8.04 -2.91 -0.02 3.48 16 Total: -1.00 -64.93 287.29 4.69 -60.24 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.44 Total: 16.11 kcal Atomic # 6 Polarization: -23.53 SS G_CDS: 3.20 Total: -20.33 kcal Atomic # 7 Polarization: -98.84 SS G_CDS: -1.64 Total: -100.48 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.74 Total: -2.38 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -0.07 Total: -1.81 kcal Total: -64.93 4.69 -60.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258813942.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.617 kcal (2) G-P(sol) polarization free energy of solvation -64.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds