Wall clock time and date at job start Mon Mar 30 2020 07:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00146 * 2 1 4 4 H 1.48495 * 109.47011 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46822 * 299.99821 * 3 2 1 6 6 H 1.48502 * 109.46876 * 59.99756 * 3 2 1 7 7 C 1.37876 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00336 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99938 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47010 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99793 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46769 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46912 * 180.02562 * 12 11 10 14 14 C 1.38206 * 120.00246 * 264.72440 * 13 12 11 15 15 C 1.38335 * 120.01119 * 179.76766 * 14 13 12 16 16 Cl 1.73605 * 119.99237 * 180.25256 * 15 14 13 17 17 C 1.38376 * 120.02118 * 0.51075 * 15 14 13 18 18 C 1.38170 * 120.01523 * 359.74501 * 17 15 14 19 19 C 1.38436 * 120.00734 * 85.00323 * 13 12 11 20 20 F 1.35097 * 120.01251 * 359.97438 * 19 13 12 21 21 H 0.97003 * 120.00204 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.47061 * 60.00581 * 9 7 2 23 23 H 1.08995 * 109.47155 * 299.99819 * 9 7 2 24 24 H 1.00899 * 110.99995 * 303.95651 * 10 9 7 25 25 H 1.09001 * 109.46874 * 60.00179 * 11 10 9 26 26 H 1.08992 * 109.47407 * 300.00197 * 11 10 9 27 27 H 1.09002 * 109.47398 * 300.00295 * 12 11 10 28 28 H 1.09001 * 109.47194 * 60.00475 * 12 11 10 29 29 H 1.08004 * 120.00102 * 0.02666 * 14 13 12 30 30 H 1.08005 * 119.99488 * 179.71750 * 17 15 14 31 31 H 1.07994 * 120.00647 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2056 -3.6158 0.0015 11 6 1.5053 -4.9071 0.0020 12 6 2.5302 -6.0430 0.0011 13 6 1.8118 -7.3678 0.0009 14 6 1.5796 -8.0282 1.1926 15 6 0.9159 -9.2419 1.1932 16 17 0.6188 -10.0679 2.6910 17 6 0.4935 -9.8005 -0.0003 18 6 0.7297 -9.1437 -1.1927 19 6 1.3893 -7.9262 -1.1933 20 9 1.6205 -7.2835 -2.3589 21 1 -0.4850 0.8400 -0.0004 22 1 0.6240 -2.5575 -0.8881 23 1 0.6247 -2.5563 0.8919 24 1 2.8399 -3.5490 -0.7804 25 1 0.8800 -4.9816 -0.8878 26 1 0.8807 -4.9814 0.8921 27 1 3.1544 -5.9685 -0.8894 28 1 3.1558 -5.9687 0.8906 29 1 1.9127 -7.5946 2.1241 30 1 -0.0206 -10.7504 0.0003 31 1 0.4003 -9.5800 -2.1240 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258851339.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:27 Heat of formation + Delta-G solvation = -42.174421 kcal Electronic energy + Delta-G solvation = -15925.430945 eV Core-core repulsion = 12953.395778 eV Total energy + Delta-G solvation = -2972.035167 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.068 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.01477 -39.46568 -36.76469 -35.79284 -33.31532 -31.98630 -30.55698 -28.59282 -25.95448 -23.26694 -22.87830 -21.37177 -21.02848 -17.77966 -16.91841 -16.48690 -16.37073 -15.72882 -14.87104 -14.69016 -14.42463 -13.91748 -13.62562 -13.59429 -13.26381 -12.94452 -12.42843 -12.10066 -11.98126 -11.54704 -11.40344 -11.09844 -11.03806 -10.83691 -10.61301 -10.57615 -9.94231 -9.30056 -9.11382 -8.68570 -8.48852 -7.33874 -6.03366 -4.05518 0.74305 0.88203 1.85540 3.18885 3.31347 3.38410 3.43663 4.03396 4.35898 4.43355 4.49491 4.79974 4.94794 5.17862 5.32661 5.37189 5.52071 5.53637 5.70075 5.82237 5.88399 5.93179 5.97287 6.36532 6.40692 6.53731 7.23388 7.41022 7.77600 8.11361 8.36339 8.58943 9.03892 9.59508 11.07876 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.032247 B = 0.003685 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.093005 B = 7597.436688 C = 8090.092323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.690 5.690 11 C 0.066 3.934 12 C -0.081 4.081 13 C -0.091 4.091 14 C -0.078 4.078 15 C -0.045 4.045 16 Cl -0.067 7.067 17 C -0.091 4.091 18 C -0.142 4.142 19 C 0.106 3.894 20 F -0.130 7.130 21 H 0.261 0.739 22 H -0.013 1.013 23 H 0.028 0.972 24 H 0.329 0.671 25 H 0.020 0.980 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.145 0.855 30 H 0.141 0.859 31 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.648 -21.496 0.234 21.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.553 4.553 8 H 0.082 0.918 9 C 0.066 3.934 10 N -0.320 5.320 11 C -0.064 4.064 12 C -0.118 4.118 13 C -0.093 4.093 14 C -0.097 4.097 15 C -0.072 4.072 16 Cl -0.038 7.038 17 C -0.110 4.110 18 C -0.161 4.161 19 C 0.086 3.914 20 F -0.109 7.109 21 H 0.071 0.929 22 H 0.005 0.995 23 H 0.046 0.954 24 H 0.145 0.855 25 H 0.038 0.962 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.107 0.893 29 H 0.163 0.837 30 H 0.158 0.842 31 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.553 -21.395 1.016 21.476 hybrid contribution -0.085 0.890 -1.006 1.346 sum 1.468 -20.505 0.010 20.557 Atomic orbital electron populations 1.69975 1.06112 1.26707 1.50953 1.25001 0.94884 0.99424 0.95322 0.86416 0.80062 0.83276 0.77509 1.19619 1.21089 1.20969 1.21225 0.93580 0.90190 1.50281 0.91839 1.19572 0.90610 0.87328 0.95859 1.60692 1.21313 1.01117 1.48864 1.21818 0.94769 0.89701 1.00141 1.20643 0.97964 0.89062 1.04173 1.20033 1.00093 0.97988 0.91182 1.20915 0.97452 0.92803 0.98532 1.20917 1.03327 0.95349 0.87595 1.98378 1.94799 1.78158 1.32462 1.20837 0.99784 1.00477 0.89915 1.21072 1.01043 0.94492 0.99448 1.17660 1.00009 0.92133 0.81568 1.91530 1.92376 1.81089 1.45856 0.92947 0.99535 0.95369 0.85469 0.96213 0.91531 0.90547 0.89329 0.83688 0.84153 0.83886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.51 -14.74 9.32 -34.44 -0.32 -15.06 16 8 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 9 C 0.19 5.15 5.44 -4.97 -0.03 5.12 16 10 N -0.69 -14.90 6.49 -115.05 -0.75 -15.65 16 11 C 0.07 1.18 5.67 -3.82 -0.02 1.16 16 12 C -0.08 -1.13 5.38 -27.88 -0.15 -1.28 16 13 C -0.09 -1.15 5.14 -104.56 -0.54 -1.68 16 14 C -0.08 -0.88 9.46 -39.56 -0.37 -1.25 16 15 C -0.05 -0.47 6.32 -39.49 -0.25 -0.71 16 16 Cl -0.07 -0.64 28.96 -51.86 -1.50 -2.15 16 17 C -0.09 -0.84 9.83 -39.56 -0.39 -1.22 16 18 C -0.14 -1.39 10.03 -39.52 -0.40 -1.79 16 19 C 0.11 1.31 7.24 -39.42 -0.29 1.02 16 20 F -0.13 -1.80 16.57 2.25 0.04 -1.76 16 21 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 22 H -0.01 -0.37 8.14 -51.93 -0.42 -0.80 16 23 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.33 6.76 8.72 -39.29 -0.34 6.42 16 25 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.08 1.05 7.79 -51.93 -0.40 0.65 16 28 H 0.09 1.17 8.05 -51.93 -0.42 0.76 16 29 H 0.15 1.48 8.06 -52.48 -0.42 1.06 16 30 H 0.14 0.95 8.06 -52.48 -0.42 0.52 16 31 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 LS Contribution 292.86 15.07 4.41 4.41 Total: -1.00 -30.40 292.86 -8.60 -39.00 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -3.67 Total: -0.04 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: -2.85 Total: -14.22 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: -0.01 Total: -42.03 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.40 -8.60 -39.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258851339.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.179 kcal (2) G-P(sol) polarization free energy of solvation -30.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds