Wall clock time and date at job start Mon Mar 30 2020 07:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00146 * 2 1 4 4 H 1.48495 * 109.47011 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46822 * 299.99821 * 3 2 1 6 6 H 1.48502 * 109.46876 * 59.99756 * 3 2 1 7 7 C 1.37876 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00336 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99938 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47010 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99793 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46769 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46912 * 180.02562 * 12 11 10 14 14 C 1.38206 * 120.00246 * 264.72440 * 13 12 11 15 15 C 1.38335 * 120.01119 * 179.76766 * 14 13 12 16 16 Cl 1.73605 * 119.99237 * 180.25256 * 15 14 13 17 17 C 1.38376 * 120.02118 * 0.51075 * 15 14 13 18 18 C 1.38170 * 120.01523 * 359.74501 * 17 15 14 19 19 C 1.38436 * 120.00734 * 85.00323 * 13 12 11 20 20 F 1.35097 * 120.01251 * 359.97438 * 19 13 12 21 21 H 0.97003 * 120.00204 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.47061 * 60.00581 * 9 7 2 23 23 H 1.08995 * 109.47155 * 299.99819 * 9 7 2 24 24 H 1.00899 * 110.99995 * 303.95651 * 10 9 7 25 25 H 1.09001 * 109.46874 * 60.00179 * 11 10 9 26 26 H 1.08992 * 109.47407 * 300.00197 * 11 10 9 27 27 H 1.09002 * 109.47398 * 300.00295 * 12 11 10 28 28 H 1.09001 * 109.47194 * 60.00475 * 12 11 10 29 29 H 1.08004 * 120.00102 * 0.02666 * 14 13 12 30 30 H 1.08005 * 119.99488 * 179.71750 * 17 15 14 31 31 H 1.07994 * 120.00647 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2056 -3.6158 0.0015 11 6 1.5053 -4.9071 0.0020 12 6 2.5302 -6.0430 0.0011 13 6 1.8118 -7.3678 0.0009 14 6 1.5796 -8.0282 1.1926 15 6 0.9159 -9.2419 1.1932 16 17 0.6188 -10.0679 2.6910 17 6 0.4935 -9.8005 -0.0003 18 6 0.7297 -9.1437 -1.1927 19 6 1.3893 -7.9262 -1.1933 20 9 1.6205 -7.2835 -2.3589 21 1 -0.4850 0.8400 -0.0004 22 1 0.6240 -2.5575 -0.8881 23 1 0.6247 -2.5563 0.8919 24 1 2.8399 -3.5490 -0.7804 25 1 0.8800 -4.9816 -0.8878 26 1 0.8807 -4.9814 0.8921 27 1 3.1544 -5.9685 -0.8894 28 1 3.1558 -5.9687 0.8906 29 1 1.9127 -7.5946 2.1241 30 1 -0.0206 -10.7504 0.0003 31 1 0.4003 -9.5800 -2.1240 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258851339.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:26 Heat of formation + Delta-G solvation = -60.383650 kcal Electronic energy + Delta-G solvation = -15926.220557 eV Core-core repulsion = 12953.395778 eV Total energy + Delta-G solvation = -2972.824779 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.00040 -40.33509 -37.74395 -37.24991 -35.04780 -33.58765 -31.43658 -30.05901 -27.71963 -24.58717 -23.89896 -23.24668 -22.17241 -18.71578 -18.53653 -17.84886 -17.33105 -16.85853 -16.65715 -16.31228 -15.53540 -15.17234 -14.97503 -14.56774 -14.31334 -14.20656 -14.00018 -13.74453 -13.31699 -12.98585 -12.68037 -12.61528 -12.38576 -12.16492 -12.08384 -11.95840 -11.77412 -11.30487 -10.68490 -10.08610 -9.57551 -9.20740 -8.24045 -6.35859 -0.12180 0.05455 1.05691 1.41642 1.42369 1.56638 2.33497 2.40171 3.09437 3.16929 3.32781 3.64699 3.81784 3.98197 4.11995 4.16667 4.31832 4.52545 4.57088 4.79944 4.85094 4.96934 5.01914 5.07409 5.10599 5.23051 5.23762 5.59760 5.65528 5.98528 6.38081 6.67121 6.85805 7.35408 8.88099 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.032247 B = 0.003685 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.093005 B = 7597.436688 C = 8090.092323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.976 3.024 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.537 4.537 8 H 0.067 0.933 9 C 0.206 3.794 10 N -0.686 5.686 11 C 0.069 3.931 12 C -0.067 4.067 13 C -0.107 4.107 14 C -0.083 4.083 15 C -0.050 4.050 16 Cl -0.059 7.059 17 C -0.081 4.081 18 C -0.135 4.135 19 C 0.085 3.915 20 F -0.144 7.144 21 H 0.266 0.734 22 H -0.041 1.041 23 H 0.001 0.999 24 H 0.336 0.664 25 H 0.009 0.991 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.151 0.849 30 H 0.170 0.830 31 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.333 -22.437 0.341 22.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.575 4.575 8 H 0.085 0.915 9 C 0.078 3.922 10 N -0.316 5.316 11 C -0.060 4.060 12 C -0.105 4.105 13 C -0.109 4.109 14 C -0.101 4.101 15 C -0.077 4.077 16 Cl -0.030 7.030 17 C -0.099 4.099 18 C -0.153 4.153 19 C 0.066 3.934 20 F -0.123 7.123 21 H 0.074 0.926 22 H -0.024 1.024 23 H 0.019 0.981 24 H 0.154 0.846 25 H 0.027 0.973 26 H 0.078 0.922 27 H 0.096 0.904 28 H 0.115 0.885 29 H 0.169 0.831 30 H 0.188 0.812 31 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 2.252 -22.365 1.122 22.506 hybrid contribution -0.358 1.062 -1.010 1.509 sum 1.894 -21.303 0.112 21.388 Atomic orbital electron populations 1.70104 1.07919 1.28038 1.51499 1.26001 0.95812 1.03565 0.94459 0.85229 0.78954 0.77999 0.77774 1.18472 1.20296 1.20291 1.21581 0.93935 0.91272 1.50685 0.91459 1.19235 0.90702 0.89046 0.93193 1.60567 1.20473 1.01358 1.49201 1.21838 0.95651 0.89292 0.99245 1.20427 0.96918 0.88443 1.04669 1.19882 1.01388 0.97614 0.92016 1.20997 0.97577 0.93279 0.98277 1.21050 1.03052 0.95132 0.88423 1.98384 1.94698 1.77845 1.32107 1.21196 0.98549 1.01151 0.89009 1.21361 0.99775 0.93329 1.00882 1.17972 1.01187 0.93266 0.81019 1.91492 1.92664 1.81565 1.46551 0.92560 1.02355 0.98106 0.84649 0.97321 0.92156 0.90401 0.88477 0.83102 0.81207 0.81376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.36 13.29 21.45 0.28 -57.07 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 3 Si 0.98 44.59 29.54 68.60 2.03 46.61 16 4 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 7 C -0.54 -31.14 9.32 25.60 0.24 -30.91 16 8 H 0.07 3.77 7.81 -2.91 -0.02 3.75 16 9 C 0.21 11.39 5.44 85.56 0.47 11.86 16 10 N -0.69 -30.21 6.49 -517.92 -3.36 -33.57 16 11 C 0.07 2.54 5.67 86.30 0.49 3.03 16 12 C -0.07 -1.86 5.38 29.85 0.16 -1.70 16 13 C -0.11 -2.63 5.14 -19.82 -0.10 -2.73 16 14 C -0.08 -1.76 9.46 22.29 0.21 -1.55 16 15 C -0.05 -0.93 6.32 22.33 0.14 -0.79 16 16 Cl -0.06 -1.03 28.96 -2.72 -0.08 -1.10 16 17 C -0.08 -1.25 9.83 22.29 0.22 -1.03 16 18 C -0.13 -2.35 10.03 22.31 0.22 -2.13 16 19 C 0.08 2.02 7.24 22.37 0.16 2.19 16 20 F -0.14 -3.96 16.57 44.97 0.74 -3.21 16 21 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 22 H -0.04 -2.46 8.14 -2.38 -0.02 -2.48 16 23 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 24 H 0.34 13.98 8.72 -89.69 -0.78 13.20 16 25 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 26 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.08 2.13 7.79 -2.39 -0.02 2.11 16 28 H 0.10 2.51 8.05 -2.39 -0.02 2.49 16 29 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 30 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 31 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -65.58 292.86 2.65 -62.94 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 0.36 Total: 8.74 kcal Atomic # 6 Polarization: -25.99 SS G_CDS: 2.67 Total: -23.32 kcal Atomic # 7 Polarization: -87.57 SS G_CDS: -3.08 Total: -90.65 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.74 Total: -3.21 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.10 kcal Total: -65.58 2.65 -62.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258851339.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.551 kcal (2) G-P(sol) polarization free energy of solvation -65.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds