Wall clock time and date at job start Mon Mar 30 2020 06:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46507 * 119.99916 * 2 1 4 4 C 1.52996 * 109.46869 * 270.00292 * 3 2 1 5 5 C 1.50707 * 109.46931 * 180.02562 * 4 3 2 6 6 H 1.08003 * 119.99374 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00185 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00167 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 119.99882 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47328 * 89.99856 * 9 7 5 11 11 H 1.48499 * 109.47040 * 209.99936 * 9 7 5 12 12 H 1.48503 * 109.47126 * 329.99876 * 9 7 5 13 13 C 1.34777 * 120.00202 * 180.02562 * 2 1 3 14 14 O 1.21707 * 120.00115 * 183.37735 * 13 2 1 15 15 C 1.46526 * 119.99769 * 3.37383 * 13 2 1 16 16 C 1.36609 * 125.97700 * 173.22336 * 15 13 2 17 17 C 1.40247 * 106.73938 * 179.97438 * 16 15 13 18 18 C 1.35366 * 107.11489 * 0.02562 * 17 16 15 19 19 Cl 1.73603 * 125.63184 * 179.97438 * 18 17 16 20 20 O 1.33951 * 108.73930 * 359.97438 * 18 17 16 21 21 H 1.09002 * 109.47077 * 264.01212 * 1 2 3 22 22 H 1.08997 * 109.47225 * 24.00613 * 1 2 3 23 23 H 1.08997 * 109.47091 * 144.01075 * 1 2 3 24 24 H 1.08998 * 109.46850 * 30.00294 * 3 2 1 25 25 H 1.08998 * 109.46900 * 150.00193 * 3 2 1 26 26 H 1.08998 * 109.47386 * 299.99673 * 4 3 2 27 27 H 1.08998 * 109.47441 * 60.00232 * 4 3 2 28 28 H 0.96995 * 120.00475 * 180.02562 * 8 7 5 29 29 H 1.08003 * 126.63061 * 0.22719 * 16 15 13 30 30 H 1.07996 * 126.44300 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7104 -1.4425 5 6 3.2064 3.0153 -1.4425 6 1 3.4764 3.4829 -0.5071 7 6 3.5516 3.6120 -2.6365 8 7 4.2092 4.7509 -2.6365 9 14 3.0840 2.8036 -4.2542 10 1 1.7482 3.2902 -4.6830 11 1 4.0919 3.1478 -5.2891 12 1 3.0404 1.3298 -4.0767 13 6 2.1389 -1.1672 -0.0005 14 8 3.3544 -1.1681 0.0616 15 6 1.4082 -2.4350 -0.0758 16 6 1.9645 -3.6749 -0.2151 17 6 0.9043 -4.5926 -0.2415 18 6 -0.2411 -3.8818 -0.1191 19 17 -1.8453 -4.5449 -0.0953 20 8 0.0676 -2.5821 -0.0193 21 1 -0.3633 -0.1072 1.0221 22 1 -0.3633 0.9387 -0.4181 23 1 -0.3633 -0.8315 -0.6039 24 1 1.6084 2.0284 0.5139 25 1 3.1499 1.1384 0.5138 26 1 3.0415 0.9509 -1.9564 27 1 1.5000 1.8408 -1.9563 28 1 4.4518 5.1710 -3.4765 29 1 3.0174 -3.9044 -0.2867 30 1 0.9864 -5.6649 -0.3408 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259413334.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:32 Heat of formation + Delta-G solvation = -36.333757 kcal Electronic energy + Delta-G solvation = -16640.155926 eV Core-core repulsion = 13656.001240 eV Total energy + Delta-G solvation = -2984.154687 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.93571 -40.75649 -38.11898 -37.23819 -35.19506 -34.33760 -32.75205 -30.71760 -28.12935 -27.00148 -24.16382 -23.10684 -22.49390 -20.98832 -19.18452 -18.88096 -18.04370 -17.81345 -17.06976 -16.56605 -15.93319 -15.39798 -14.81465 -14.66236 -14.58021 -14.39871 -14.26811 -14.07896 -13.52797 -13.25401 -13.12493 -12.87100 -12.49086 -12.33904 -11.98452 -11.78948 -11.60534 -11.33041 -11.23275 -10.80163 -9.91810 -9.58018 -8.32968 -6.37683 -0.24383 -0.04163 1.09176 1.30690 1.34724 1.46045 1.69127 1.97296 2.26270 2.32538 3.02102 3.47446 3.67956 4.14524 4.26331 4.27701 4.35903 4.42635 4.65288 4.72369 4.77540 4.89558 5.04135 5.10389 5.27334 5.41838 5.49360 5.64470 6.20357 6.22945 6.68310 6.86357 7.27120 8.83399 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.033291 B = 0.004690 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.861471 B = 5968.662485 C = 6098.208700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.604 5.604 3 C 0.136 3.864 4 C -0.015 4.015 5 C -0.532 4.532 6 H 0.042 0.958 7 C 0.012 3.988 8 N -0.945 5.945 9 Si 0.946 3.054 10 H -0.257 1.257 11 H -0.281 1.281 12 H -0.262 1.262 13 C 0.587 3.413 14 O -0.558 6.558 15 C -0.075 4.075 16 C -0.111 4.111 17 C -0.172 4.172 18 C 0.036 3.964 19 Cl 0.052 6.948 20 O -0.153 6.153 21 H 0.078 0.922 22 H 0.091 0.909 23 H 0.084 0.916 24 H 0.095 0.905 25 H 0.061 0.939 26 H 0.003 0.997 27 H 0.027 0.973 28 H 0.268 0.732 29 H 0.176 0.824 30 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.588 -21.395 4.629 26.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.334 5.334 3 C 0.014 3.986 4 C -0.054 4.054 5 C -0.570 4.570 6 H 0.060 0.940 7 C -0.186 4.186 8 N -0.585 5.585 9 Si 0.770 3.230 10 H -0.182 1.182 11 H -0.207 1.207 12 H -0.186 1.186 13 C 0.375 3.625 14 O -0.439 6.439 15 C -0.127 4.127 16 C -0.132 4.132 17 C -0.192 4.192 18 C -0.042 4.042 19 Cl 0.080 6.920 20 O -0.051 6.051 21 H 0.097 0.903 22 H 0.109 0.891 23 H 0.102 0.898 24 H 0.113 0.887 25 H 0.080 0.920 26 H 0.021 0.979 27 H 0.046 0.954 28 H 0.077 0.923 29 H 0.194 0.806 30 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -14.268 -21.021 4.605 25.820 hybrid contribution 0.089 0.166 -0.706 0.730 sum -14.179 -20.855 3.899 25.518 Atomic orbital electron populations 1.22228 0.76794 1.04475 1.03595 1.48081 1.08958 1.05684 1.70698 1.21420 0.96522 0.82730 0.97912 1.19749 0.96221 0.94712 0.94670 1.21264 1.36189 1.05891 0.93675 0.93988 1.25884 0.94403 0.95112 1.03159 1.70035 1.41154 1.19064 1.28266 0.85716 0.78940 0.79564 0.78772 1.18201 1.20700 1.18611 1.17002 0.86048 0.82194 0.77219 1.90875 1.13638 1.86509 1.52834 1.21853 0.79711 0.96208 1.14909 1.22220 1.02319 0.89640 0.98988 1.21863 0.87935 1.02741 1.06658 1.23347 0.90671 0.82692 1.07456 1.98459 1.17059 1.79690 1.96752 1.84244 1.23653 1.26158 1.71025 0.90323 0.89074 0.89758 0.88708 0.92008 0.97867 0.95434 0.92286 0.80640 0.78294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.73 9.63 127.77 1.23 2.96 16 2 N -0.60 -20.74 2.87 -851.69 -2.45 -23.19 16 3 C 0.14 5.53 5.34 86.38 0.46 6.00 16 4 C -0.02 -0.74 4.37 29.85 0.13 -0.61 16 5 C -0.53 -31.06 9.66 25.60 0.25 -30.81 16 6 H 0.04 2.65 7.99 -2.91 -0.02 2.62 16 7 C 0.01 0.72 5.47 84.66 0.46 1.18 16 8 N -0.94 -59.53 13.96 21.45 0.30 -59.24 16 9 Si 0.95 45.36 27.47 68.60 1.88 47.24 16 10 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 11 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.26 -12.28 6.54 99.48 0.65 -11.63 16 13 C 0.59 21.19 7.64 86.40 0.66 21.85 16 14 O -0.56 -24.38 16.43 -4.37 -0.07 -24.45 16 15 C -0.07 -2.10 6.76 24.05 0.16 -1.94 16 16 C -0.11 -2.54 10.62 22.38 0.24 -2.30 16 17 C -0.17 -2.90 10.84 22.09 0.24 -2.66 16 18 C 0.04 0.68 7.93 67.16 0.53 1.21 16 19 Cl 0.05 0.72 29.30 -2.72 -0.08 0.64 16 20 O -0.15 -3.59 7.29 -5.95 -0.04 -3.63 16 21 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.09 2.09 8.03 -2.39 -0.02 2.07 16 23 H 0.08 1.95 5.40 -2.39 -0.01 1.94 16 24 H 0.09 3.46 8.07 -2.39 -0.02 3.44 16 25 H 0.06 2.77 7.38 -2.39 -0.02 2.76 16 26 H 0.00 0.16 7.20 -2.39 -0.02 0.14 16 27 H 0.03 1.25 7.57 -2.39 -0.02 1.23 16 28 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 29 H 0.18 3.72 8.06 -2.91 -0.02 3.69 16 30 H 0.20 1.89 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -71.33 280.53 5.01 -66.33 By element: Atomic # 1 Polarization: 0.31 SS G_CDS: 1.10 Total: 1.41 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: 4.36 Total: -5.11 kcal Atomic # 7 Polarization: -80.27 SS G_CDS: -2.15 Total: -82.42 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.12 Total: -28.08 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.88 Total: 47.24 kcal Atomic # 17 Polarization: 0.72 SS G_CDS: -0.08 Total: 0.64 kcal Total: -71.33 5.01 -66.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259413334.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.992 kcal (2) G-P(sol) polarization free energy of solvation -71.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds