Wall clock time and date at job start Mon Mar 30 2020 07:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38205 * 120.00808 * 2 1 4 4 C 1.38326 * 120.01646 * 179.97438 * 3 2 1 5 5 Cl 1.73595 * 119.99280 * 179.97438 * 4 3 2 6 6 C 1.38382 * 120.02127 * 359.97438 * 4 3 2 7 7 C 1.50698 * 119.99229 * 179.97438 * 6 4 3 8 8 H 1.09008 * 109.46977 * 40.00565 * 7 6 4 9 9 N 1.46904 * 109.46837 * 159.99823 * 7 6 4 10 10 C 1.52997 * 109.47721 * 280.00416 * 7 6 4 11 11 C 1.50701 * 109.47212 * 174.99887 * 10 7 6 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 7 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 7 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47094 * 90.00289 * 15 13 11 17 17 H 1.48505 * 109.47195 * 210.00171 * 15 13 11 18 18 H 1.48493 * 109.47449 * 330.00136 * 15 13 11 19 19 C 1.38168 * 120.01167 * 0.27762 * 6 4 3 20 20 C 1.38434 * 120.00432 * 179.97438 * 2 1 3 21 21 F 1.35102 * 120.01646 * 0.02869 * 20 2 1 22 22 H 1.09000 * 109.47269 * 90.00387 * 1 2 3 23 23 H 1.08999 * 109.47513 * 210.00028 * 1 2 3 24 24 H 1.08999 * 109.47277 * 330.00407 * 1 2 3 25 25 H 1.08001 * 119.99134 * 0.02562 * 3 2 1 26 26 H 1.00898 * 111.00551 * 296.05373 * 9 7 6 27 27 H 1.00898 * 110.99372 * 60.01160 * 9 7 6 28 28 H 1.09002 * 109.47153 * 54.99889 * 10 7 6 29 29 H 1.09001 * 109.46832 * 295.00079 * 10 7 6 30 30 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 31 31 H 1.08003 * 120.00343 * 179.74141 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1968 0.0000 4 6 3.5814 1.1970 0.0005 5 17 4.4490 2.7006 -0.0001 6 6 4.2740 -0.0011 0.0016 7 6 5.7810 -0.0001 0.0016 8 1 6.1438 0.7880 0.6616 9 7 6.2714 -1.3009 0.4765 10 6 6.2909 0.2495 -1.4191 11 6 7.7928 0.3728 -1.3993 12 1 8.3298 0.2818 -0.4668 13 6 8.4812 0.6008 -2.5720 14 7 7.8273 0.7112 -3.7076 15 14 10.3428 0.7529 -2.5476 16 1 10.9516 -0.5876 -2.7418 17 1 10.7800 1.6581 -3.6406 18 1 10.7770 1.3090 -1.2410 19 6 3.5840 -1.1981 -0.0037 20 6 2.1993 -1.1988 0.0005 21 9 1.5242 -2.3691 0.0005 22 1 -0.3634 -0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 1.6582 2.1321 0.0004 26 1 6.0020 -1.4607 1.4356 27 1 5.9485 -2.0484 -0.1192 28 1 5.8557 1.1716 -1.8046 29 1 6.0031 -0.5838 -2.0601 30 1 8.3116 0.8719 -4.5325 31 1 4.1247 -2.1331 -0.0070 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259458027.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:27 Heat of formation + Delta-G solvation = -59.223777 kcal Electronic energy + Delta-G solvation = -16716.202351 eV Core-core repulsion = 13743.427868 eV Total energy + Delta-G solvation = -2972.774483 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.02390 -40.73665 -37.41452 -37.26222 -34.68687 -32.86240 -31.54763 -30.20082 -28.26950 -25.73712 -24.00179 -23.08391 -21.41674 -18.74944 -18.00626 -17.85262 -17.30126 -16.91931 -16.70052 -16.27022 -15.28202 -15.17176 -14.80952 -14.58541 -14.20155 -14.13734 -13.75147 -13.58972 -13.20156 -12.98549 -12.77642 -12.56194 -12.35527 -12.17457 -12.08894 -11.76647 -11.44777 -11.16456 -10.48535 -9.96066 -9.55054 -9.43308 -8.09792 -6.15003 -0.11948 0.02664 1.15503 1.43521 1.44270 1.55217 2.29930 2.48707 3.07173 3.24051 3.52446 3.60666 3.78983 3.96171 4.10729 4.35173 4.50066 4.60646 4.73387 4.76283 4.82473 4.91892 5.10681 5.15572 5.18353 5.51902 5.66603 5.69808 5.88436 6.28514 6.45445 6.75101 6.98218 7.50862 9.02173 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.027760 B = 0.006014 C = 0.005448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.391712 B = 4654.487371 C = 5138.202217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.114 4.114 3 C -0.079 4.079 4 C -0.050 4.050 5 Cl -0.062 7.062 6 C -0.088 4.088 7 C 0.145 3.855 8 H 0.082 0.918 9 N -0.828 5.828 10 C 0.047 3.953 11 C -0.502 4.502 12 H 0.060 0.940 13 C -0.003 4.003 14 N -0.938 5.938 15 Si 0.957 3.043 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.266 1.266 19 C -0.150 4.150 20 C 0.094 3.906 21 F -0.135 7.135 22 H 0.085 0.915 23 H 0.075 0.925 24 H 0.095 0.905 25 H 0.168 0.832 26 H 0.343 0.657 27 H 0.340 0.660 28 H 0.008 0.992 29 H -0.015 1.015 30 H 0.259 0.741 31 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.838 -0.697 9.510 17.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.115 4.115 3 C -0.098 4.098 4 C -0.078 4.078 5 Cl -0.033 7.033 6 C -0.092 4.092 7 C 0.033 3.967 8 H 0.099 0.901 9 N -0.358 5.358 10 C 0.010 3.990 11 C -0.540 4.540 12 H 0.078 0.922 13 C -0.200 4.200 14 N -0.580 5.580 15 Si 0.783 3.217 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.190 1.190 19 C -0.170 4.170 20 C 0.075 3.925 21 F -0.114 7.114 22 H 0.103 0.897 23 H 0.094 0.906 24 H 0.114 0.886 25 H 0.185 0.815 26 H 0.157 0.843 27 H 0.154 0.846 28 H 0.027 0.973 29 H 0.004 0.996 30 H 0.068 0.932 31 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.004 -0.298 9.213 16.765 hybrid contribution 0.149 -0.295 -0.367 0.494 sum -13.854 -0.594 8.846 16.449 Atomic orbital electron populations 1.20805 0.87044 1.04705 1.03970 1.20138 0.98876 0.90352 1.02142 1.21067 0.90769 0.99382 0.98563 1.21010 0.93120 0.87289 1.06331 1.98383 1.77060 1.31128 1.96692 1.20924 0.99114 0.91645 0.97472 1.20441 0.84856 0.92723 0.98698 0.90055 1.58665 1.67397 1.03080 1.06701 1.18922 0.95334 0.95055 0.89709 1.21443 0.92881 1.46193 0.93484 0.92216 1.25838 1.02917 0.95801 0.95396 1.70097 1.37104 1.51913 0.98886 0.85559 0.80533 0.77866 0.77716 1.20281 1.21249 1.19029 1.20970 0.92719 0.98990 1.04284 1.17595 0.89585 0.81591 1.03770 1.91475 1.80079 1.45941 1.93902 0.89682 0.90637 0.88594 0.81495 0.84304 0.84568 0.97348 0.99638 0.93244 0.83569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.71 9.83 71.24 0.70 -1.01 16 2 C -0.11 -2.66 5.88 -19.83 -0.12 -2.78 16 3 C -0.08 -1.97 9.48 22.28 0.21 -1.76 16 4 C -0.05 -1.59 6.31 22.33 0.14 -1.45 16 5 Cl -0.06 -2.07 26.65 -2.72 -0.07 -2.14 16 6 C -0.09 -3.02 5.08 -19.85 -0.10 -3.13 16 7 C 0.15 5.82 2.38 44.17 0.10 5.92 16 8 H 0.08 3.39 7.35 -2.38 -0.02 3.37 16 9 N -0.83 -29.55 8.43 -171.79 -1.45 -31.00 16 10 C 0.05 2.44 4.54 29.85 0.14 2.57 16 11 C -0.50 -28.44 8.84 25.60 0.23 -28.21 16 12 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 13 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 14 N -0.94 -57.64 13.29 21.45 0.28 -57.35 16 15 Si 0.96 45.56 29.54 68.60 2.03 47.59 16 16 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 17 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 19 C -0.15 -4.53 9.23 22.31 0.21 -4.33 16 20 C 0.09 2.55 7.24 22.37 0.16 2.71 16 21 F -0.14 -3.53 16.48 44.97 0.74 -2.79 16 22 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.07 1.13 7.64 -2.39 -0.02 1.12 16 24 H 0.10 1.08 8.09 -2.39 -0.02 1.07 16 25 H 0.17 3.14 8.06 -2.91 -0.02 3.11 16 26 H 0.34 9.93 9.06 -89.70 -0.81 9.12 16 27 H 0.34 11.57 7.28 -89.70 -0.65 10.92 16 28 H 0.01 0.46 7.30 -2.39 -0.02 0.44 16 29 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 30 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 31 H 0.15 4.06 6.25 -2.91 -0.02 4.04 16 Total: -1.00 -65.39 283.33 3.37 -62.02 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -0.29 Total: 14.86 kcal Atomic # 6 Polarization: -33.32 SS G_CDS: 2.13 Total: -31.19 kcal Atomic # 7 Polarization: -87.19 SS G_CDS: -1.16 Total: -88.35 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.74 Total: -2.79 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Atomic # 17 Polarization: -2.07 SS G_CDS: -0.07 Total: -2.14 kcal Total: -65.39 3.37 -62.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259458027.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.797 kcal (2) G-P(sol) polarization free energy of solvation -65.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds