Wall clock time and date at job start Mon Mar 30 2020 06:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46996 * 2 1 4 4 C 1.50705 * 109.46705 * 240.00216 * 2 1 3 5 5 H 1.08003 * 119.99949 * 239.99608 * 4 2 1 6 6 C 1.37871 * 119.99823 * 60.00035 * 4 2 1 7 7 N 1.31515 * 120.00647 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99739 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47048 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47193 * 119.99819 * 8 6 4 11 11 H 1.48507 * 109.47335 * 240.00199 * 8 6 4 12 12 N 1.46498 * 109.47093 * 120.00503 * 2 1 3 13 13 C 1.34781 * 119.99849 * 299.99450 * 12 2 1 14 14 O 1.21718 * 119.99651 * 0.02562 * 13 12 2 15 15 C 1.46492 * 120.00168 * 180.02562 * 13 12 2 16 16 O 1.34994 * 126.00633 * 0.02562 * 15 13 12 17 17 C 1.33940 * 109.40184 * 179.73695 * 16 15 13 18 18 C 1.35071 * 108.82028 * 359.97438 * 17 16 15 19 19 C 1.36708 * 126.01072 * 179.71505 * 15 13 12 20 20 Cl 1.73598 * 126.66467 * 0.26529 * 19 15 13 21 21 H 1.08997 * 109.46901 * 299.99625 * 1 2 3 22 22 H 1.08999 * 109.47428 * 59.99572 * 1 2 3 23 23 H 1.09002 * 109.47323 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.46779 * 179.97438 * 3 2 1 25 25 H 1.08994 * 109.47165 * 300.00064 * 3 2 1 26 26 H 1.08997 * 109.46990 * 60.00429 * 3 2 1 27 27 H 0.96996 * 120.00179 * 179.97438 * 7 6 4 28 28 H 0.96995 * 120.00349 * 120.00357 * 12 2 1 29 29 H 1.07999 * 125.58376 * 180.02562 * 17 16 15 30 30 H 1.08002 * 126.43440 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9426 0.8297 -2.6034 8 14 2.3223 -1.1194 -4.0080 9 1 3.1482 -2.2856 -3.6039 10 1 1.1675 -1.5865 -4.8165 11 1 3.1471 -0.1857 -4.8162 12 7 2.0183 -0.6907 1.1961 13 6 1.6928 -0.2302 2.4203 14 8 0.9927 0.7592 2.5319 15 6 2.1815 -0.9205 3.6163 16 8 2.9616 -2.0221 3.6338 17 6 3.2139 -2.3686 4.9028 18 6 2.5980 -1.4913 5.7247 19 6 1.9327 -0.5590 4.9111 20 17 0.9803 0.7903 5.4458 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 3.1299 1.4425 0.0005 25 1 1.6766 1.9563 -0.8899 26 1 1.6767 1.9563 0.8900 27 1 0.7086 1.1614 -3.4844 28 1 2.5760 -1.4793 1.1071 29 1 3.8125 -3.2108 5.2172 30 1 2.6132 -1.5047 6.8045 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259793131.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:00 Heat of formation + Delta-G solvation = -43.088270 kcal Electronic energy + Delta-G solvation = -17160.536415 eV Core-core repulsion = 14176.088831 eV Total energy + Delta-G solvation = -2984.447584 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.75768 -40.62508 -37.73834 -37.18866 -34.43071 -33.81882 -32.16992 -30.28831 -27.64389 -27.34267 -24.72157 -22.92120 -22.07937 -20.61447 -19.83077 -18.16386 -17.49184 -17.22407 -17.02933 -15.92480 -15.45107 -15.33668 -14.81463 -14.54226 -14.38134 -13.95990 -13.92514 -13.38704 -13.35054 -12.98798 -12.94604 -12.41702 -12.35976 -12.07706 -11.99483 -11.80613 -11.14332 -10.69878 -10.54626 -10.53443 -9.91430 -9.58052 -8.08892 -6.28197 -0.07762 0.94521 1.26375 1.46041 1.48170 1.58678 1.81257 2.18324 2.36857 2.60677 3.17386 3.68951 3.81754 4.23021 4.47048 4.69222 4.77330 4.87797 4.98754 5.18052 5.23043 5.25095 5.54037 5.56124 5.62151 5.68951 5.93027 5.93663 6.23271 6.71207 6.93751 7.29471 7.46802 8.92635 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.035809 B = 0.005830 C = 0.005187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.740344 B = 4801.335185 C = 5397.314577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.289 3.711 3 C -0.135 4.135 4 C -0.540 4.540 5 H 0.067 0.933 6 C 0.025 3.975 7 N -0.904 5.904 8 Si 0.967 3.033 9 H -0.264 1.264 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.692 5.692 13 C 0.578 3.422 14 O -0.543 6.543 15 C -0.084 4.084 16 O -0.157 6.157 17 C 0.028 3.972 18 C -0.222 4.222 19 C -0.066 4.066 20 Cl -0.023 7.023 21 H 0.030 0.970 22 H 0.070 0.930 23 H 0.023 0.977 24 H 0.023 0.977 25 H 0.070 0.930 26 H 0.030 0.970 27 H 0.264 0.736 28 H 0.402 0.598 29 H 0.272 0.728 30 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.404 -7.597 14.610 17.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.205 3.795 3 C -0.193 4.193 4 C -0.579 4.579 5 H 0.086 0.914 6 C -0.176 4.176 7 N -0.542 5.542 8 Si 0.792 3.208 9 H -0.188 1.188 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.340 5.340 13 C 0.364 3.636 14 O -0.424 6.424 15 C -0.138 4.138 16 O -0.053 6.053 17 C -0.041 4.041 18 C -0.241 4.241 19 C -0.097 4.097 20 Cl 0.006 6.994 21 H 0.049 0.951 22 H 0.088 0.912 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.088 0.912 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.237 0.763 29 H 0.287 0.713 30 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 4.835 -6.794 14.261 16.520 hybrid contribution 0.143 -0.201 -0.732 0.773 sum 4.977 -6.995 13.529 16.023 Atomic orbital electron populations 1.21939 0.97902 0.98748 1.00761 1.18049 0.90913 0.89613 0.80913 1.21936 0.97912 0.98739 1.00760 1.21412 1.32859 1.13021 0.90567 0.91441 1.25591 0.94796 0.95529 1.01665 1.69970 1.36585 1.23471 1.24183 0.85380 0.77983 0.78561 0.78874 1.18837 1.20817 1.20825 1.46405 1.51219 1.31089 1.05330 1.16922 0.80850 0.83744 0.82067 1.90817 1.39284 1.26350 1.85949 1.21891 1.03993 0.92817 0.95077 1.84209 1.53121 1.36235 1.31691 1.25464 0.99554 1.00872 0.78172 1.22017 1.03190 0.95959 1.02947 1.21654 1.00507 0.94812 0.92683 1.98366 1.69516 1.42195 1.89281 0.95096 0.91173 0.95830 0.95828 0.91176 0.95096 0.92625 0.76299 0.71275 0.78805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.01 8.18 71.98 0.59 -6.42 16 2 C 0.29 14.54 0.78 2.86 0.00 14.54 16 3 C -0.13 -7.01 8.18 71.98 0.59 -6.42 16 4 C -0.54 -28.02 8.18 25.60 0.21 -27.81 16 5 H 0.07 3.34 7.60 -2.91 -0.02 3.31 16 6 C 0.02 1.29 5.15 84.65 0.44 1.73 16 7 N -0.90 -49.53 9.35 21.45 0.20 -49.33 16 8 Si 0.97 41.37 29.54 68.60 2.03 43.39 16 9 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 10 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 11 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 12 N -0.69 -29.99 5.09 -430.41 -2.19 -32.19 16 13 C 0.58 24.42 7.20 86.39 0.62 25.04 16 14 O -0.54 -25.97 11.74 -4.40 -0.05 -26.02 16 15 C -0.08 -2.83 7.13 24.06 0.17 -2.66 16 16 O -0.16 -4.10 10.40 -5.96 -0.06 -4.16 16 17 C 0.03 0.45 12.07 67.09 0.81 1.26 16 18 C -0.22 -4.24 10.88 22.09 0.24 -4.00 16 19 C -0.07 -1.96 6.76 22.46 0.15 -1.81 16 20 Cl -0.02 -0.71 27.84 -2.72 -0.08 -0.78 16 21 H 0.03 1.59 6.16 -2.39 -0.01 1.58 16 22 H 0.07 3.90 6.07 -2.39 -0.01 3.89 16 23 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.02 1.15 8.14 -2.39 -0.02 1.14 16 25 H 0.07 3.90 6.07 -2.39 -0.01 3.89 16 26 H 0.03 1.59 6.16 -2.39 -0.01 1.58 16 27 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 28 H 0.40 15.53 8.07 -92.71 -0.75 14.78 16 29 H 0.27 0.88 8.06 -2.91 -0.02 0.85 16 30 H 0.19 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -64.99 270.62 4.10 -60.88 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.44 Total: 14.76 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: 3.82 Total: -6.56 kcal Atomic # 7 Polarization: -79.52 SS G_CDS: -1.99 Total: -81.52 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -0.11 Total: -30.19 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.39 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -0.08 Total: -0.78 kcal Total: -64.99 4.10 -60.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259793131.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.797 kcal (2) G-P(sol) polarization free energy of solvation -64.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds