Wall clock time and date at job start Mon Mar 30 2020 06:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30649 * 1 3 3 Si 1.86800 * 119.99621 * 2 1 4 4 H 1.48506 * 109.47268 * 95.57507 * 3 2 1 5 5 H 1.48499 * 109.47011 * 215.57060 * 3 2 1 6 6 H 1.48496 * 109.47317 * 335.57580 * 3 2 1 7 7 C 1.40248 * 120.00323 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99590 * 355.76296 * 7 2 1 9 9 C 1.40236 * 120.00004 * 175.75840 * 7 2 1 10 10 N 1.33767 * 120.58408 * 35.46584 * 9 7 2 11 11 C 1.31566 * 122.35986 * 179.75329 * 10 9 7 12 12 C 1.38199 * 122.72595 * 0.53146 * 11 10 9 13 13 C 1.40537 * 119.46969 * 359.70302 * 12 11 10 14 14 C 1.40532 * 121.81939 * 180.09801 * 13 12 11 15 15 C 1.35948 * 119.01342 * 180.20926 * 14 13 12 16 16 C 1.40018 * 121.24584 * 359.88112 * 15 14 13 17 17 C 1.38755 * 121.64767 * 359.75322 * 16 15 14 18 18 C 1.40457 * 117.46032 * 0.47870 * 17 16 15 19 19 C 1.50877 * 115.43960 * 180.77491 * 17 16 15 20 20 C 1.54127 * 110.48794 * 339.19047 * 19 17 16 21 21 S 1.77544 * 130.15528 * 179.62090 * 16 15 14 22 22 H 0.97003 * 119.99950 * 359.97438 * 1 2 3 23 23 H 1.07991 * 118.63557 * 180.28043 * 11 10 9 24 24 H 1.08003 * 120.26106 * 179.72795 * 12 11 10 25 25 H 1.07999 * 120.49439 * 0.18478 * 14 13 12 26 26 H 1.08005 * 119.37533 * 179.86302 * 15 14 13 27 27 H 1.09001 * 109.28809 * 218.91301 * 19 17 16 28 28 H 1.09003 * 109.26873 * 99.46285 * 19 17 16 29 29 H 1.08997 * 111.11181 * 270.48127 * 20 19 17 30 30 H 1.09001 * 111.14670 * 146.36430 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.6057 1.9785 1.3935 5 1 3.4741 1.4771 -0.8144 6 1 1.3839 2.6838 -0.5789 7 6 2.0078 -1.2145 -0.0005 8 1 1.4700 -2.1485 0.0681 9 6 3.4073 -1.2161 -0.0904 10 7 4.1281 -0.2551 0.4981 11 6 5.4422 -0.2252 0.4403 12 6 6.1819 -1.1742 -0.2395 13 6 5.5206 -2.2255 -0.8971 14 6 6.2238 -3.2180 -1.6009 15 6 5.5260 -4.2070 -2.2200 16 6 4.1276 -4.2529 -2.1653 17 6 3.3942 -3.2981 -1.4756 18 6 4.1074 -2.2700 -0.8376 19 6 1.8982 -3.4928 -1.4931 20 6 1.4847 -4.3902 -2.6760 21 16 2.9913 -5.4131 -2.8829 22 1 -0.4850 0.8401 0.0004 23 1 5.9641 0.5765 0.9414 24 1 7.2597 -1.1085 -0.2648 25 1 7.3024 -3.1952 -1.6497 26 1 6.0604 -4.9715 -2.7645 27 1 1.4100 -2.5230 -1.5893 28 1 1.5854 -3.9608 -0.5597 29 1 1.2875 -3.7968 -3.5688 30 1 0.6236 -5.0072 -2.4193 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259820880.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:56 Heat of formation + Delta-G solvation = 39.218865 kcal Electronic energy + Delta-G solvation = -16448.970228 eV Core-core repulsion = 13913.277470 eV Total energy + Delta-G solvation = -2535.692758 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.55262 -36.51846 -34.87560 -33.40673 -30.89360 -30.17235 -28.48542 -26.07587 -23.89550 -22.66556 -21.90315 -20.02935 -18.32025 -17.23929 -16.19240 -15.50114 -15.15327 -14.85382 -14.46809 -13.74303 -13.65275 -13.22606 -12.98864 -12.73042 -12.04862 -12.03432 -11.74131 -11.65002 -11.39424 -11.34438 -10.82213 -10.59500 -10.29445 -10.15719 -9.70646 -9.44678 -9.09742 -8.37332 -7.98680 -7.67698 -7.26431 -6.71386 -4.92414 1.33664 1.86717 2.14309 2.70718 2.80059 3.20570 3.28885 3.34796 3.83751 4.08978 4.42457 5.01348 5.16747 5.21618 5.41526 5.43062 5.68300 5.73773 5.85548 5.96901 6.04703 6.21850 6.26299 6.44793 6.56563 6.63629 6.78795 6.85523 6.92271 7.01834 7.29620 7.45840 7.64549 7.76265 8.18126 8.23917 9.41035 9.63762 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.020854 B = 0.010000 C = 0.006984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.351238 B = 2799.237636 C = 4008.000293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.083 3.917 3 Si 0.974 3.026 4 H -0.266 1.266 5 H -0.257 1.257 6 H -0.316 1.316 7 C -0.389 4.389 8 H 0.119 0.881 9 C 0.265 3.735 10 N -0.593 5.593 11 C 0.159 3.841 12 C -0.326 4.326 13 C 0.035 3.965 14 C -0.152 4.152 15 C -0.057 4.057 16 C -0.150 4.150 17 C -0.024 4.024 18 C -0.128 4.128 19 C -0.099 4.099 20 C -0.077 4.077 21 S -0.194 6.194 22 H 0.296 0.704 23 H 0.123 0.877 24 H 0.108 0.892 25 H 0.121 0.879 26 H 0.112 0.888 27 H 0.125 0.875 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.813 -3.493 -3.224 5.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.142 4.142 3 Si 0.804 3.196 4 H -0.191 1.191 5 H -0.182 1.182 6 H -0.247 1.247 7 C -0.419 4.419 8 H 0.137 0.863 9 C 0.136 3.864 10 N -0.313 5.313 11 C 0.005 3.995 12 C -0.350 4.350 13 C 0.030 3.970 14 C -0.172 4.172 15 C -0.080 4.080 16 C -0.262 4.262 17 C -0.031 4.031 18 C -0.133 4.133 19 C -0.136 4.136 20 C -0.225 4.225 21 S 0.045 5.955 22 H 0.107 0.893 23 H 0.140 0.860 24 H 0.126 0.874 25 H 0.139 0.861 26 H 0.130 0.870 27 H 0.143 0.857 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.179 -4.014 -3.302 5.635 hybrid contribution 0.789 1.165 0.129 1.413 sum 2.969 -2.849 -3.172 5.195 Atomic orbital electron populations 1.69499 1.08409 1.31859 1.30380 1.26403 0.95050 1.03236 0.89537 0.85056 0.77957 0.75792 0.80803 1.19095 1.18150 1.24668 1.19796 0.88997 0.96442 1.36651 0.86324 1.19883 0.93414 0.86169 0.86917 1.67440 1.07148 1.29362 1.27315 1.21970 0.90293 0.94852 0.92409 1.21108 0.98705 1.01451 1.13746 1.17753 0.91667 0.93801 0.93789 1.20594 0.98715 0.96208 1.01689 1.19871 0.90932 0.98166 0.99023 1.21699 0.95916 1.00047 1.08524 1.20604 0.94012 0.93390 0.95073 1.19644 0.92609 0.98391 1.02686 1.21461 0.92397 1.02468 0.97278 1.24324 0.96863 0.99294 1.02026 1.85495 1.03946 1.26429 1.79655 0.89306 0.85964 0.87406 0.86112 0.87039 0.85729 0.89172 0.89039 0.87506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.41 13.92 55.56 0.77 -17.63 16 2 C 0.08 1.99 5.52 -17.30 -0.10 1.90 16 3 Si 0.97 21.91 25.86 -169.99 -4.40 17.51 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.26 -6.12 6.49 56.52 0.37 -5.75 16 6 H -0.32 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.39 -9.42 7.42 -38.08 -0.28 -9.71 16 8 H 0.12 2.81 5.04 -52.49 -0.26 2.54 16 9 C 0.27 6.49 6.06 -82.75 -0.50 5.99 16 10 N -0.59 -14.44 5.79 -9.80 -0.06 -14.50 16 11 C 0.16 3.46 11.07 -17.68 -0.20 3.26 16 12 C -0.33 -6.76 9.89 -38.73 -0.38 -7.15 16 13 C 0.03 0.76 5.74 -106.92 -0.61 0.14 16 14 C -0.15 -2.86 9.83 -39.54 -0.39 -3.25 16 15 C -0.06 -1.06 9.95 -39.74 -0.40 -1.45 16 16 C -0.15 -2.97 6.51 -38.72 -0.25 -3.22 16 17 C -0.02 -0.51 5.94 -103.51 -0.62 -1.12 16 18 C -0.13 -2.98 5.92 -104.29 -0.62 -3.59 16 19 C -0.10 -1.85 4.30 -27.21 -0.12 -1.96 16 20 C -0.08 -1.20 7.60 37.75 0.29 -0.91 16 21 S -0.19 -3.36 23.08 -107.50 -2.48 -5.84 16 22 H 0.30 6.39 8.29 -40.82 -0.34 6.05 16 23 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 24 H 0.11 1.93 8.06 -52.48 -0.42 1.51 16 25 H 0.12 1.92 8.06 -52.49 -0.42 1.49 16 26 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 27 H 0.12 2.51 5.66 -51.93 -0.29 2.22 16 28 H 0.09 1.64 7.61 -51.93 -0.39 1.25 16 29 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 260.22 15.07 3.92 3.92 Total: -1.00 -26.28 260.22 -9.07 -35.35 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -2.66 Total: 2.26 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -4.17 Total: -21.07 kcal Atomic # 7 Polarization: -32.85 SS G_CDS: 0.72 Total: -32.13 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.40 Total: 17.51 kcal Atomic # 16 Polarization: -3.36 SS G_CDS: -2.48 Total: -5.84 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -26.28 -9.07 -35.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259820880.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.566 kcal (2) G-P(sol) polarization free energy of solvation -26.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds