Wall clock time and date at job start Mon Mar 30 2020 06:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30649 * 1 3 3 Si 1.86800 * 119.99621 * 2 1 4 4 H 1.48506 * 109.47268 * 95.57507 * 3 2 1 5 5 H 1.48499 * 109.47011 * 215.57060 * 3 2 1 6 6 H 1.48496 * 109.47317 * 335.57580 * 3 2 1 7 7 C 1.40248 * 120.00323 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99590 * 355.76296 * 7 2 1 9 9 C 1.40236 * 120.00004 * 175.75840 * 7 2 1 10 10 N 1.33767 * 120.58408 * 35.46584 * 9 7 2 11 11 C 1.31566 * 122.35986 * 179.75329 * 10 9 7 12 12 C 1.38199 * 122.72595 * 0.53146 * 11 10 9 13 13 C 1.40537 * 119.46969 * 359.70302 * 12 11 10 14 14 C 1.40532 * 121.81939 * 180.09801 * 13 12 11 15 15 C 1.35948 * 119.01342 * 180.20926 * 14 13 12 16 16 C 1.40018 * 121.24584 * 359.88112 * 15 14 13 17 17 C 1.38755 * 121.64767 * 359.75322 * 16 15 14 18 18 C 1.40457 * 117.46032 * 0.47870 * 17 16 15 19 19 C 1.50877 * 115.43960 * 180.77491 * 17 16 15 20 20 C 1.54127 * 110.48794 * 339.19047 * 19 17 16 21 21 S 1.77544 * 130.15528 * 179.62090 * 16 15 14 22 22 H 0.97003 * 119.99950 * 359.97438 * 1 2 3 23 23 H 1.07991 * 118.63557 * 180.28043 * 11 10 9 24 24 H 1.08003 * 120.26106 * 179.72795 * 12 11 10 25 25 H 1.07999 * 120.49439 * 0.18478 * 14 13 12 26 26 H 1.08005 * 119.37533 * 179.86302 * 15 14 13 27 27 H 1.09001 * 109.28809 * 218.91301 * 19 17 16 28 28 H 1.09003 * 109.26873 * 99.46285 * 19 17 16 29 29 H 1.08997 * 111.11181 * 270.48127 * 20 19 17 30 30 H 1.09001 * 111.14670 * 146.36430 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.6057 1.9785 1.3935 5 1 3.4741 1.4771 -0.8144 6 1 1.3839 2.6838 -0.5789 7 6 2.0078 -1.2145 -0.0005 8 1 1.4700 -2.1485 0.0681 9 6 3.4073 -1.2161 -0.0904 10 7 4.1281 -0.2551 0.4981 11 6 5.4422 -0.2252 0.4403 12 6 6.1819 -1.1742 -0.2395 13 6 5.5206 -2.2255 -0.8971 14 6 6.2238 -3.2180 -1.6009 15 6 5.5260 -4.2070 -2.2200 16 6 4.1276 -4.2529 -2.1653 17 6 3.3942 -3.2981 -1.4756 18 6 4.1074 -2.2700 -0.8376 19 6 1.8982 -3.4928 -1.4931 20 6 1.4847 -4.3902 -2.6760 21 16 2.9913 -5.4131 -2.8829 22 1 -0.4850 0.8401 0.0004 23 1 5.9641 0.5765 0.9414 24 1 7.2597 -1.1085 -0.2648 25 1 7.3024 -3.1952 -1.6497 26 1 6.0604 -4.9715 -2.7645 27 1 1.4100 -2.5230 -1.5893 28 1 1.5854 -3.9608 -0.5597 29 1 1.2875 -3.7968 -3.5688 30 1 0.6236 -5.0072 -2.4193 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259820880.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:56 Heat of formation + Delta-G solvation = 26.633760 kcal Electronic energy + Delta-G solvation = -16449.515959 eV Core-core repulsion = 13913.277470 eV Total energy + Delta-G solvation = -2536.238490 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.16471 -38.13553 -36.47926 -35.04294 -32.50732 -31.79292 -30.01955 -27.75921 -25.35624 -24.27187 -23.53047 -21.60045 -20.01474 -18.77764 -17.83351 -17.17582 -16.74157 -16.27847 -16.00742 -15.33924 -15.15046 -14.88245 -14.70446 -14.29682 -13.68311 -13.54268 -13.32189 -13.14414 -13.02367 -12.86276 -12.44758 -12.17455 -11.91868 -11.82126 -11.39562 -11.04970 -10.66636 -10.01688 -9.72021 -9.23289 -9.01722 -8.21544 -6.67133 -0.28244 0.26027 0.75461 1.03907 1.36549 1.39456 1.49321 1.54353 2.18405 2.31256 2.69664 3.47935 3.58600 3.83812 3.92318 4.09036 4.15065 4.20604 4.41170 4.45824 4.60898 4.71939 4.81968 4.91591 5.01285 5.02931 5.20056 5.30457 5.34219 5.44700 5.67079 5.82387 5.92952 6.13139 6.43659 6.51772 7.68787 7.91985 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.020854 B = 0.010000 C = 0.006984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.351238 B = 2799.237636 C = 4008.000293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.064 3.936 3 Si 1.012 2.988 4 H -0.275 1.275 5 H -0.279 1.279 6 H -0.304 1.304 7 C -0.416 4.416 8 H 0.113 0.887 9 C 0.252 3.748 10 N -0.617 5.617 11 C 0.129 3.871 12 C -0.308 4.308 13 C 0.003 3.997 14 C -0.138 4.138 15 C -0.062 4.062 16 C -0.154 4.154 17 C -0.049 4.049 18 C -0.155 4.155 19 C -0.095 4.095 20 C -0.070 4.070 21 S -0.174 6.174 22 H 0.303 0.697 23 H 0.150 0.850 24 H 0.142 0.858 25 H 0.157 0.843 26 H 0.145 0.855 27 H 0.105 0.895 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.386 -4.802 -4.382 7.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.159 4.159 3 Si 0.843 3.157 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.234 1.234 7 C -0.447 4.447 8 H 0.131 0.869 9 C 0.121 3.879 10 N -0.337 5.337 11 C -0.023 4.023 12 C -0.331 4.331 13 C -0.002 4.002 14 C -0.158 4.158 15 C -0.085 4.085 16 C -0.266 4.266 17 C -0.056 4.056 18 C -0.160 4.160 19 C -0.132 4.132 20 C -0.218 4.218 21 S 0.065 5.935 22 H 0.114 0.886 23 H 0.167 0.833 24 H 0.159 0.841 25 H 0.175 0.825 26 H 0.162 0.838 27 H 0.123 0.877 28 H 0.104 0.896 29 H 0.121 0.879 30 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.773 -5.318 -4.461 7.900 hybrid contribution 0.516 1.399 0.413 1.547 sum 4.289 -3.919 -4.048 7.080 Atomic orbital electron populations 1.69485 1.08515 1.32504 1.32137 1.26675 0.95424 1.04108 0.89665 0.84512 0.76578 0.75030 0.79597 1.20087 1.20503 1.23436 1.19762 0.89273 0.96430 1.39251 0.86920 1.20104 0.93699 0.86992 0.87073 1.67388 1.08558 1.29898 1.27883 1.22476 0.89815 0.96414 0.93594 1.21545 1.00305 0.99978 1.11279 1.18190 0.91511 0.95318 0.95201 1.20997 1.00434 0.94703 0.99682 1.20312 0.90599 0.98781 0.98761 1.22195 0.97141 0.99962 1.07316 1.20884 0.95282 0.93736 0.95740 1.19929 0.93789 0.98981 1.03326 1.21340 0.91178 1.02156 0.98499 1.24435 0.97159 0.98985 1.01180 1.85403 1.03687 1.25577 1.78808 0.88575 0.83305 0.84066 0.82510 0.83754 0.87704 0.89550 0.87904 0.84561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.93 13.92 21.88 0.30 -38.63 16 2 C 0.06 3.17 5.52 85.36 0.47 3.64 16 3 Si 1.01 46.17 25.86 68.60 1.77 47.95 16 4 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.28 -13.59 6.49 99.48 0.65 -12.94 16 6 H -0.30 -13.00 7.11 99.48 0.71 -12.29 16 7 C -0.42 -20.98 7.42 23.24 0.17 -20.80 16 8 H 0.11 5.62 5.04 -2.91 -0.01 5.60 16 9 C 0.25 12.65 6.06 41.61 0.25 12.90 16 10 N -0.62 -30.49 5.79 -184.92 -1.07 -31.56 16 11 C 0.13 5.50 11.07 84.72 0.94 6.44 16 12 C -0.31 -12.13 9.89 22.82 0.23 -11.90 16 13 C 0.00 0.12 5.74 -21.35 -0.12 -0.01 16 14 C -0.14 -4.74 9.83 22.30 0.22 -4.52 16 15 C -0.06 -2.08 9.95 22.17 0.22 -1.86 16 16 C -0.15 -5.77 6.51 22.83 0.15 -5.63 16 17 C -0.05 -2.07 5.94 -19.14 -0.11 -2.19 16 18 C -0.16 -7.22 5.92 -19.65 -0.12 -7.34 16 19 C -0.09 -3.52 4.30 30.29 0.13 -3.39 16 20 C -0.07 -2.04 7.60 72.36 0.55 -1.49 16 21 S -0.17 -5.55 23.08 -56.49 -1.30 -6.85 16 22 H 0.30 13.36 8.29 -92.71 -0.77 12.59 16 23 H 0.15 5.32 8.06 -2.92 -0.02 5.30 16 24 H 0.14 4.50 8.06 -2.91 -0.02 4.48 16 25 H 0.16 4.17 8.06 -2.91 -0.02 4.14 16 26 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 27 H 0.11 4.37 5.66 -2.39 -0.01 4.36 16 28 H 0.09 3.21 7.61 -2.39 -0.02 3.19 16 29 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 30 H 0.14 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -56.84 260.22 3.79 -53.05 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 1.11 Total: 12.18 kcal Atomic # 6 Polarization: -39.12 SS G_CDS: 2.98 Total: -36.15 kcal Atomic # 7 Polarization: -69.42 SS G_CDS: -0.77 Total: -70.18 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.77 Total: 47.95 kcal Atomic # 16 Polarization: -5.55 SS G_CDS: -1.30 Total: -6.85 kcal Total: -56.84 3.79 -53.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259820880.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.684 kcal (2) G-P(sol) polarization free energy of solvation -56.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds