Wall clock time and date at job start Mon Mar 30 2020 06:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30643 * 1 3 3 Si 1.86802 * 120.00059 * 2 1 4 4 H 1.48505 * 109.46980 * 239.99965 * 3 2 1 5 5 H 1.48503 * 109.47061 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47389 * 119.99658 * 3 2 1 7 7 C 1.40248 * 120.00093 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99994 * 180.02562 * 7 2 1 9 9 C 1.40236 * 119.99926 * 0.02562 * 7 2 1 10 10 N 1.33774 * 120.54692 * 359.97438 * 9 7 2 11 11 C 1.31557 * 122.28399 * 179.71648 * 10 9 7 12 12 C 1.38153 * 122.78511 * 359.97438 * 11 10 9 13 13 C 1.40528 * 119.61576 * 359.97438 * 12 11 10 14 14 C 1.39985 * 122.16716 * 180.09824 * 13 12 11 15 15 C 1.37644 * 120.87357 * 179.97438 * 14 13 12 16 16 C 1.40072 * 118.67401 * 0.26778 * 15 14 13 17 17 C 1.38740 * 121.79289 * 359.60475 * 16 15 14 18 18 C 1.38804 * 119.68250 * 0.25653 * 17 16 15 19 19 S 1.77529 * 108.15427 * 179.34058 * 16 15 14 20 20 C 1.83250 * 96.66487 * 344.73584 * 19 16 15 21 21 C 1.50974 * 126.24447 * 180.41790 * 15 14 13 22 22 H 0.96999 * 120.00598 * 0.02562 * 1 2 3 23 23 H 1.07999 * 118.60609 * 179.97438 * 11 10 9 24 24 H 1.07993 * 120.18918 * 180.02562 * 12 11 10 25 25 H 1.07998 * 119.56557 * 359.96183 * 14 13 12 26 26 H 1.07998 * 120.15797 * 180.23074 * 17 16 15 27 27 H 1.09003 * 111.07540 * 267.11284 * 20 19 16 28 28 H 1.08995 * 111.11185 * 143.09617 * 20 19 16 29 29 H 1.09003 * 109.26695 * 320.97814 * 21 15 14 30 30 H 1.08995 * 109.26522 * 80.38461 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.0942 1.6964 -1.2125 5 1 1.2754 2.7465 -0.0006 6 1 3.0942 1.6965 1.2125 7 6 2.0077 -1.2146 0.0005 8 1 3.0877 -1.2145 0.0010 9 6 1.3065 -2.4290 0.0005 10 7 -0.0312 -2.4418 0.0005 11 6 -0.7232 -3.5607 -0.0050 12 6 -0.1289 -4.8078 -0.0117 13 6 1.2727 -4.9092 -0.0134 14 6 1.9305 -6.1448 -0.0221 15 6 3.3053 -6.2131 -0.0241 16 6 4.0375 -5.0191 -0.0114 17 6 3.4144 -3.7796 -0.0051 18 6 2.0283 -3.7070 -0.0061 19 16 5.7647 -5.4296 0.0020 20 6 5.5614 -7.1895 0.4703 21 6 4.1364 -7.4734 -0.0420 22 1 -0.4851 0.8400 -0.0004 23 1 -1.8016 -3.5017 -0.0042 24 1 -0.7380 -5.6996 -0.0165 25 1 1.3518 -7.0566 -0.0272 26 1 4.0051 -2.8754 0.0009 27 1 5.6218 -7.3170 1.5512 28 1 6.2929 -7.8179 -0.0376 29 1 3.6674 -8.2226 0.5959 30 1 4.1901 -7.8542 -1.0619 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259828461.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:16 Heat of formation + Delta-G solvation = 23.635302 kcal Electronic energy + Delta-G solvation = -15908.682816 eV Core-core repulsion = 13372.314304 eV Total energy + Delta-G solvation = -2536.368512 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.057 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.84864 -38.27211 -35.83854 -34.72410 -33.16063 -30.74877 -29.98530 -27.79410 -25.12911 -24.53892 -22.60834 -22.51005 -19.64668 -18.44019 -17.88956 -17.20935 -16.51743 -16.23213 -15.99826 -15.26792 -14.76436 -14.55058 -14.34330 -14.21772 -13.79705 -13.40836 -13.18398 -12.97670 -12.96765 -12.78219 -12.43745 -12.32388 -12.07429 -11.54268 -11.41030 -10.98793 -10.65649 -10.00897 -9.56552 -9.01035 -8.51465 -8.29437 -6.60312 -0.08067 0.32473 0.79086 1.21380 1.36914 1.45764 1.51189 1.59869 2.12378 2.38097 2.81051 3.61686 3.79866 3.84962 3.98291 4.16125 4.25011 4.31270 4.51893 4.55842 4.65011 4.71874 4.84947 4.90380 5.00490 5.06262 5.26044 5.32350 5.40437 5.56200 5.72011 5.94868 6.06002 6.21454 6.43448 6.76793 8.08902 8.22465 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.024085 B = 0.006902 C = 0.005396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.289141 B = 4055.746632 C = 5188.046287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.717 5.717 2 C 0.016 3.984 3 Si 0.994 3.006 4 H -0.254 1.254 5 H -0.260 1.260 6 H -0.254 1.254 7 C -0.400 4.400 8 H 0.103 0.897 9 C 0.233 3.767 10 N -0.562 5.562 11 C 0.137 3.863 12 C -0.358 4.358 13 C 0.012 3.988 14 C -0.145 4.145 15 C -0.082 4.082 16 C -0.162 4.162 17 C -0.038 4.038 18 C -0.180 4.180 19 S -0.201 6.201 20 C -0.065 4.065 21 C -0.081 4.081 22 H 0.291 0.709 23 H 0.134 0.866 24 H 0.122 0.878 25 H 0.137 0.863 26 H 0.118 0.882 27 H 0.107 0.893 28 H 0.144 0.856 29 H 0.111 0.889 30 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.567 -8.257 0.549 11.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.336 5.336 2 C -0.210 4.210 3 Si 0.812 3.188 4 H -0.178 1.178 5 H -0.184 1.184 6 H -0.178 1.178 7 C -0.430 4.430 8 H 0.121 0.879 9 C 0.105 3.895 10 N -0.278 5.278 11 C -0.022 4.022 12 C -0.383 4.383 13 C 0.007 3.993 14 C -0.165 4.165 15 C -0.087 4.087 16 C -0.274 4.274 17 C -0.062 4.062 18 C -0.186 4.186 19 S 0.037 5.963 20 C -0.213 4.213 21 C -0.119 4.119 22 H 0.103 0.897 23 H 0.151 0.849 24 H 0.140 0.860 25 H 0.155 0.845 26 H 0.136 0.864 27 H 0.125 0.875 28 H 0.162 0.838 29 H 0.129 0.871 30 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 8.031 -6.743 0.332 10.491 hybrid contribution -0.980 -0.540 0.189 1.135 sum 7.051 -7.283 0.520 10.150 Atomic orbital electron populations 1.70154 1.09311 1.30652 1.23451 1.27260 0.95883 1.05001 0.92877 0.85068 0.78763 0.74338 0.80613 1.17835 1.18390 1.17769 1.20145 0.95768 0.90210 1.36830 0.87934 1.20209 0.89075 0.91063 0.89110 1.68667 1.06783 1.27567 1.24824 1.22629 0.99621 0.88887 0.91028 1.21289 0.93238 0.98165 1.25560 1.18042 0.94241 0.92565 0.94464 1.20576 0.93025 0.96415 1.06499 1.20972 0.94181 0.94354 0.99180 1.21915 0.95833 0.95816 1.13854 1.20283 0.92958 0.95732 0.97257 1.19981 0.93718 0.94991 1.09881 1.85706 1.05253 1.16285 1.89078 1.24387 0.99537 0.91557 1.05771 1.20931 0.92256 0.94216 1.04447 0.89732 0.84907 0.86044 0.84537 0.86406 0.87483 0.83822 0.87097 0.87841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -36.73 11.49 21.88 0.25 -36.48 16 2 C 0.02 0.79 5.50 85.36 0.47 1.25 16 3 Si 0.99 35.34 29.56 68.60 2.03 37.37 16 4 H -0.25 -8.77 7.11 99.48 0.71 -8.06 16 5 H -0.26 -8.64 7.11 99.48 0.71 -7.94 16 6 H -0.25 -8.72 7.11 99.48 0.71 -8.02 16 7 C -0.40 -20.92 8.86 23.24 0.21 -20.71 16 8 H 0.10 4.93 6.25 -2.91 -0.02 4.91 16 9 C 0.23 13.02 6.72 41.57 0.28 13.30 16 10 N -0.56 -31.83 7.88 -185.10 -1.46 -33.29 16 11 C 0.14 6.89 11.06 84.71 0.94 7.82 16 12 C -0.36 -16.75 9.89 22.81 0.23 -16.52 16 13 C 0.01 0.56 5.74 -21.37 -0.12 0.44 16 14 C -0.15 -5.69 9.71 22.55 0.22 -5.47 16 15 C -0.08 -2.92 5.93 -19.47 -0.12 -3.03 16 16 C -0.16 -6.50 6.49 22.84 0.15 -6.35 16 17 C -0.04 -1.75 9.52 22.53 0.21 -1.53 16 18 C -0.18 -9.28 5.90 -19.98 -0.12 -9.40 16 19 S -0.20 -6.39 23.08 -56.49 -1.30 -7.70 16 20 C -0.07 -1.33 7.58 72.35 0.55 -0.78 16 21 C -0.08 -1.88 6.24 30.30 0.19 -1.69 16 22 H 0.29 13.21 8.29 -92.71 -0.77 12.44 16 23 H 0.13 5.90 8.06 -2.91 -0.02 5.87 16 24 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 25 H 0.14 4.46 8.06 -2.91 -0.02 4.43 16 26 H 0.12 5.32 6.48 -2.91 -0.02 5.30 16 27 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -64.78 270.23 3.76 -61.02 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 1.17 Total: 21.76 kcal Atomic # 6 Polarization: -45.76 SS G_CDS: 3.08 Total: -42.68 kcal Atomic # 7 Polarization: -68.56 SS G_CDS: -1.21 Total: -69.77 kcal Atomic # 14 Polarization: 35.34 SS G_CDS: 2.03 Total: 37.37 kcal Atomic # 16 Polarization: -6.39 SS G_CDS: -1.30 Total: -7.70 kcal Total: -64.78 3.76 -61.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259828461.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.655 kcal (2) G-P(sol) polarization free energy of solvation -64.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds