Wall clock time and date at job start Mon Mar 30 2020 07:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38213 * 119.99284 * 2 1 4 4 C 1.38441 * 119.98522 * 179.76805 * 3 2 1 5 5 F 1.35101 * 120.01317 * 180.22875 * 4 3 2 6 6 C 1.38478 * 119.97351 * 0.43595 * 4 3 2 7 7 C 1.50699 * 120.00244 * 179.81346 * 6 4 3 8 8 H 1.08997 * 109.47516 * 324.72258 * 7 6 4 9 9 N 1.46904 * 109.47277 * 204.72294 * 7 6 4 10 10 C 1.53006 * 109.47053 * 84.72791 * 7 6 4 11 11 C 1.50698 * 109.47184 * 185.00135 * 10 7 6 12 12 H 1.08005 * 119.99819 * 359.97438 * 11 10 7 13 13 C 1.37875 * 120.00046 * 180.02562 * 11 10 7 14 14 N 1.31520 * 119.99809 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 119.99912 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47123 * 90.00333 * 15 13 11 17 17 H 1.48506 * 109.46940 * 210.00455 * 15 13 11 18 18 H 1.48493 * 109.47121 * 329.99876 * 15 13 11 19 19 C 1.38163 * 119.99163 * 359.54107 * 6 4 3 20 20 C 1.38333 * 119.99516 * 179.97438 * 2 1 3 21 21 Cl 1.73598 * 119.98800 * 0.02562 * 20 2 1 22 22 H 1.08995 * 109.47179 * 270.02469 * 1 2 3 23 23 H 1.09007 * 109.47333 * 30.02751 * 1 2 3 24 24 H 1.09000 * 109.47331 * 150.02580 * 1 2 3 25 25 H 1.07995 * 120.00657 * 359.97438 * 3 2 1 26 26 H 1.00896 * 111.00022 * 176.04745 * 9 7 6 27 27 H 1.00898 * 110.99974 * 300.00369 * 9 7 6 28 28 H 1.09001 * 109.47002 * 304.99539 * 10 7 6 29 29 H 1.08993 * 109.46955 * 64.99976 * 10 7 6 30 30 H 0.97004 * 119.99097 * 179.97438 * 14 13 11 31 31 H 1.07992 * 119.99709 * 180.23288 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1979 1.1970 0.0000 4 6 3.5823 1.1969 0.0049 5 9 4.2582 2.3666 0.0095 6 6 4.2740 -0.0028 0.0006 7 6 5.7810 -0.0037 0.0016 8 1 6.1453 0.8373 -0.5883 9 7 6.2703 -1.2598 -0.5823 10 6 6.2901 0.1228 1.4389 11 6 7.7920 0.2454 1.4309 12 1 8.3298 0.2338 0.4943 13 6 8.4798 0.3714 2.6192 14 7 9.7906 0.4779 2.6122 15 14 7.5497 0.3908 4.2391 16 1 7.4170 -0.9971 4.7503 17 1 8.2934 1.2132 5.2270 18 1 6.1996 0.9718 4.0278 19 6 3.5823 -1.1988 0.0011 20 6 2.1985 -1.1981 0.0005 21 17 1.3301 -2.7012 0.0005 22 1 -0.3633 0.0004 1.0276 23 1 -0.3634 0.8898 -0.5143 24 1 -0.3634 -0.8902 -0.5134 25 1 1.6579 2.1323 -0.0004 26 1 7.2768 -1.2581 -0.6521 27 1 5.9459 -2.0551 -0.0529 28 1 5.8557 1.0091 1.9015 29 1 6.0007 -0.7619 2.0060 30 1 10.2744 0.5669 3.4483 31 1 4.1216 -2.1344 0.0015 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259891646.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:06 Heat of formation + Delta-G solvation = -61.091082 kcal Electronic energy + Delta-G solvation = -16768.612817 eV Core-core repulsion = 13795.757362 eV Total energy + Delta-G solvation = -2972.855455 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.068 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.95361 -40.62063 -37.87331 -37.08580 -34.72205 -33.02684 -31.48098 -30.50298 -28.52279 -25.55706 -23.93777 -23.02670 -21.36978 -19.32877 -18.15504 -18.01148 -17.29192 -16.79049 -16.39550 -15.80390 -15.32510 -15.05949 -15.04384 -14.87123 -14.68896 -14.20034 -13.79676 -13.56208 -13.31055 -12.99046 -12.88425 -12.66737 -12.32459 -12.25453 -11.97889 -11.91048 -11.70765 -11.34407 -10.83801 -9.94168 -9.68332 -9.33475 -8.35121 -6.39411 -0.08090 0.09699 1.07931 1.28180 1.31558 1.42066 2.29175 2.35634 2.99353 3.18719 3.48914 3.62666 3.74188 4.05191 4.16836 4.39166 4.56088 4.57488 4.61279 4.78517 4.81440 4.89745 5.06951 5.10176 5.22049 5.27061 5.37638 5.53141 5.70769 6.15463 6.25290 6.59914 6.67093 7.25640 8.80461 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.024973 B = 0.006077 C = 0.005784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.946144 B = 4606.489719 C = 4840.040611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.054 4.054 3 C -0.138 4.138 4 C 0.087 3.913 5 F -0.145 7.145 6 C -0.108 4.108 7 C 0.147 3.853 8 H 0.067 0.933 9 N -0.828 5.828 10 C -0.028 4.028 11 C -0.526 4.526 12 H 0.045 0.955 13 C 0.014 3.986 14 N -0.942 5.942 15 Si 0.940 3.060 16 H -0.264 1.264 17 H -0.283 1.283 18 H -0.258 1.258 19 C -0.071 4.071 20 C -0.053 4.053 21 Cl -0.052 7.052 22 H 0.089 0.911 23 H 0.092 0.908 24 H 0.079 0.921 25 H 0.169 0.831 26 H 0.348 0.652 27 H 0.339 0.661 28 H 0.010 0.990 29 H 0.020 0.980 30 H 0.267 0.733 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.257 -3.060 -4.270 21.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.055 4.055 3 C -0.157 4.157 4 C 0.067 3.933 5 F -0.123 7.123 6 C -0.110 4.110 7 C 0.035 3.965 8 H 0.085 0.915 9 N -0.357 5.357 10 C -0.067 4.067 11 C -0.564 4.564 12 H 0.063 0.937 13 C -0.184 4.184 14 N -0.582 5.582 15 Si 0.764 3.236 16 H -0.189 1.189 17 H -0.208 1.208 18 H -0.182 1.182 19 C -0.090 4.090 20 C -0.080 4.080 21 Cl -0.023 7.023 22 H 0.108 0.892 23 H 0.111 0.889 24 H 0.098 0.902 25 H 0.187 0.813 26 H 0.162 0.838 27 H 0.152 0.848 28 H 0.029 0.971 29 H 0.039 0.961 30 H 0.076 0.924 31 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -21.568 -2.929 -4.824 22.294 hybrid contribution 1.221 0.160 1.695 2.095 sum -20.347 -2.768 -3.129 20.772 Atomic orbital electron populations 1.20956 0.87138 1.04831 1.04207 1.19873 0.98529 0.89663 0.97418 1.21157 0.90613 1.00343 1.03561 1.17912 0.91062 0.80651 1.03645 1.91484 1.80834 1.46171 1.93839 1.19991 0.96243 0.92390 1.02363 1.19923 0.88429 0.93839 0.94277 0.91468 1.59228 1.17307 1.03079 1.56087 1.20190 0.95123 0.96550 0.94848 1.21264 0.91286 1.50188 0.93672 0.93671 1.25843 0.95449 0.94134 1.02955 1.70042 1.08230 1.51555 1.28375 0.85807 0.79421 0.79044 0.79302 1.18914 1.20835 1.18177 1.20765 0.92099 0.98201 0.97935 1.20870 0.91889 0.87917 1.07296 1.98348 1.76067 1.31017 1.96874 0.89211 0.88932 0.90170 0.81306 0.83800 0.84783 0.97137 0.96149 0.92414 0.83430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 9.61 71.23 0.68 -0.92 16 2 C -0.05 -1.17 5.88 -19.85 -0.12 -1.28 16 3 C -0.14 -3.32 9.68 22.31 0.22 -3.10 16 4 C 0.09 2.80 7.24 22.38 0.16 2.96 16 5 F -0.14 -5.21 16.57 44.97 0.75 -4.46 16 6 C -0.11 -3.69 5.06 -19.83 -0.10 -3.79 16 7 C 0.15 5.91 2.76 44.17 0.12 6.03 16 8 H 0.07 2.96 7.80 -2.39 -0.02 2.94 16 9 N -0.83 -29.88 8.79 -171.79 -1.51 -31.39 16 10 C -0.03 -1.32 3.67 29.85 0.11 -1.21 16 11 C -0.53 -29.40 9.10 25.60 0.23 -29.16 16 12 H 0.05 2.73 7.39 -2.91 -0.02 2.71 16 13 C 0.01 0.82 5.47 84.65 0.46 1.28 16 14 N -0.94 -58.02 13.96 21.45 0.30 -57.72 16 15 Si 0.94 44.41 27.47 68.60 1.88 46.29 16 16 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 17 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 18 H -0.26 -11.73 6.54 99.48 0.65 -11.08 16 19 C -0.07 -2.07 9.05 22.29 0.20 -1.86 16 20 C -0.05 -1.30 6.31 22.33 0.14 -1.16 16 21 Cl -0.05 -1.08 27.29 -2.72 -0.07 -1.16 16 22 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.09 0.95 8.09 -2.38 -0.02 0.93 16 24 H 0.08 1.07 6.90 -2.39 -0.02 1.06 16 25 H 0.17 3.01 8.06 -2.91 -0.02 2.98 16 26 H 0.35 13.58 7.90 -89.70 -0.71 12.87 16 27 H 0.34 11.00 7.21 -89.70 -0.65 10.35 16 28 H 0.01 0.51 7.20 -2.39 -0.02 0.49 16 29 H 0.02 0.92 7.57 -2.39 -0.02 0.90 16 30 H 0.27 15.41 8.31 -92.71 -0.77 14.63 16 31 H 0.15 4.04 6.29 -2.91 -0.02 4.02 16 Total: -1.00 -63.62 279.54 3.23 -60.40 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -0.23 Total: 20.26 kcal Atomic # 6 Polarization: -34.34 SS G_CDS: 2.12 Total: -32.22 kcal Atomic # 7 Polarization: -87.90 SS G_CDS: -1.21 Total: -89.11 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 0.75 Total: -4.46 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.88 Total: 46.29 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -0.07 Total: -1.16 kcal Total: -63.62 3.23 -60.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259891646.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.695 kcal (2) G-P(sol) polarization free energy of solvation -63.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds