Wall clock time and date at job start Mon Mar 30 2020 06:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99530 * 2 1 4 4 H 1.48501 * 109.47475 * 270.00224 * 3 2 1 5 5 H 1.48505 * 109.47389 * 29.99985 * 3 2 1 6 6 H 1.48499 * 109.47368 * 150.00148 * 3 2 1 7 7 C 1.37865 * 120.00612 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00511 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00112 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46915 * 304.67695 * 9 7 2 11 11 N 1.46508 * 109.46853 * 64.67421 * 9 7 2 12 12 C 1.34777 * 119.99963 * 64.11913 * 11 9 7 13 13 O 1.21279 * 119.99648 * 354.48684 * 12 11 9 14 14 C 1.50697 * 109.47251 * 184.67476 * 9 7 2 15 15 C 1.38211 * 119.99408 * 341.36888 * 14 9 7 16 16 C 1.38436 * 119.98520 * 180.32191 * 15 14 9 17 17 F 1.35093 * 120.01436 * 179.68385 * 16 15 14 18 18 C 1.38483 * 119.97280 * 359.70116 * 16 15 14 19 19 C 1.38160 * 119.98920 * 0.02562 * 18 16 15 20 20 C 1.38325 * 119.99025 * 161.11818 * 14 9 7 21 21 Cl 1.73598 * 119.99197 * 359.97438 * 20 14 9 22 22 H 0.96996 * 120.00371 * 359.97438 * 1 2 3 23 23 H 0.96999 * 119.99489 * 244.11847 * 11 9 7 24 24 H 1.07992 * 119.99943 * 174.48662 * 12 11 9 25 25 H 1.07992 * 120.00735 * 0.02562 * 15 14 9 26 26 H 1.08005 * 120.00189 * 179.97438 * 18 16 15 27 27 H 1.08007 * 119.99494 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.5635 -2.5217 0.8449 11 7 0.4949 -2.6264 -1.2488 12 6 1.1461 -2.7069 -2.4261 13 8 2.3510 -2.5739 -2.4628 14 6 2.2266 -3.6421 0.1146 15 6 3.5616 -3.4438 -0.1831 16 6 4.4562 -4.4956 -0.0837 17 9 5.7601 -4.3040 -0.3807 18 6 4.0140 -5.7443 0.3200 19 6 2.6802 -5.9398 0.6228 20 6 1.7864 -4.8882 0.5233 21 17 0.1107 -5.1347 0.9040 22 1 -0.4850 0.8400 0.0004 23 1 -0.4745 -2.6526 -1.2279 24 1 0.5950 -2.8899 -3.3366 25 1 3.9059 -2.4699 -0.4978 26 1 4.7115 -6.5653 0.3974 27 1 2.3351 -6.9138 0.9373 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259918339.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:35 Heat of formation + Delta-G solvation = -76.538104 kcal Electronic energy + Delta-G solvation = -17065.414485 eV Core-core repulsion = 13956.056102 eV Total energy + Delta-G solvation = -3109.358383 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 257.036 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.86409 -40.67228 -39.11363 -37.24140 -36.05201 -33.84514 -32.40126 -31.07333 -28.57430 -25.71255 -23.57783 -23.21339 -21.35000 -18.92932 -18.50914 -18.29146 -17.43751 -17.01696 -16.57244 -16.54360 -15.87628 -15.19244 -14.88107 -14.59300 -14.34750 -14.19684 -13.95712 -13.64710 -13.22016 -12.87019 -12.75730 -12.31217 -12.12988 -11.91379 -11.51238 -11.37884 -10.80026 -10.46914 -9.68149 -9.44655 -9.35764 -8.16644 -6.23895 0.07442 0.31544 1.24749 1.36478 1.40209 1.47843 2.30307 2.41499 2.52320 3.02895 3.30356 3.44704 3.85961 3.93049 4.26988 4.38994 4.60715 4.84530 4.93393 5.09736 5.15638 5.25567 5.52383 5.77142 5.88419 6.18895 6.19671 6.76359 7.20181 7.44844 7.90119 8.89378 Molecular weight = 257.04amu Principal moments of inertia in cm(-1) A = 0.019314 B = 0.009706 C = 0.007763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.360775 B = 2884.082379 C = 3606.007750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.035 3.965 3 Si 0.940 3.060 4 H -0.287 1.287 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.051 0.949 9 C 0.302 3.698 10 H 0.053 0.947 11 N -0.692 5.692 12 C 0.475 3.525 13 O -0.597 6.597 14 C -0.047 4.047 15 C -0.108 4.108 16 C 0.070 3.930 17 F -0.148 7.148 18 C -0.140 4.140 19 C -0.086 4.086 20 C -0.053 4.053 21 Cl -0.059 7.059 22 H 0.263 0.737 23 H 0.395 0.605 24 H 0.144 0.856 25 H 0.123 0.877 26 H 0.173 0.827 27 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.013 -11.625 0.683 11.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.167 4.167 3 Si 0.767 3.233 4 H -0.214 1.214 5 H -0.203 1.203 6 H -0.200 1.200 7 C -0.566 4.566 8 H 0.069 0.931 9 C 0.199 3.801 10 H 0.071 0.929 11 N -0.341 5.341 12 C 0.244 3.756 13 O -0.477 6.477 14 C -0.049 4.049 15 C -0.127 4.127 16 C 0.050 3.950 17 F -0.127 7.127 18 C -0.158 4.158 19 C -0.104 4.104 20 C -0.080 4.080 21 Cl -0.031 7.031 22 H 0.072 0.928 23 H 0.229 0.771 24 H 0.159 0.841 25 H 0.141 0.859 26 H 0.191 0.809 27 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 0.589 -11.442 0.696 11.478 hybrid contribution 0.016 1.506 -0.208 1.521 sum 0.605 -9.936 0.488 9.966 Atomic orbital electron populations 1.69949 1.06279 1.27336 1.50266 1.25441 0.95615 1.01298 0.94317 0.85847 0.79086 0.80748 0.77621 1.21378 1.20295 1.20011 1.21639 0.93052 0.91491 1.50415 0.93130 1.17275 0.88835 0.88973 0.84969 0.92897 1.46697 1.09767 1.70731 1.06880 1.22847 0.88835 0.76195 0.87759 1.90589 1.17939 1.51346 1.87777 1.20212 0.94634 0.94629 0.95470 1.21196 0.93051 0.99128 0.99372 1.18075 0.78087 0.95730 1.03069 1.91436 1.33900 1.96074 1.91305 1.21266 0.97016 0.95637 1.01927 1.21113 0.91131 0.98980 0.99196 1.21058 0.86667 0.94924 1.05358 1.98329 1.15441 1.96584 1.92698 0.92818 0.77106 0.84091 0.85908 0.80948 0.80908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.72 12.98 21.44 0.28 -47.45 15 2 C 0.03 1.86 5.41 84.65 0.46 2.32 15 3 Si 0.94 43.92 29.54 68.60 2.03 45.95 15 4 H -0.29 -13.67 7.11 99.48 0.71 -12.96 15 5 H -0.28 -12.46 7.11 99.48 0.71 -11.76 15 6 H -0.28 -12.85 7.11 99.48 0.71 -12.14 15 7 C -0.53 -28.09 7.05 25.60 0.18 -27.91 15 8 H 0.05 2.83 5.30 -2.91 -0.02 2.82 15 9 C 0.30 13.96 2.04 43.50 0.09 14.04 15 10 H 0.05 2.58 7.40 -2.39 -0.02 2.57 15 11 N -0.69 -28.46 4.84 -463.43 -2.24 -30.70 15 12 C 0.48 19.35 12.04 129.79 1.56 20.91 15 13 O -0.60 -29.44 13.83 -3.03 -0.04 -29.48 15 14 C -0.05 -1.98 4.50 -19.85 -0.09 -2.07 15 15 C -0.11 -4.68 7.34 22.31 0.16 -4.51 15 16 C 0.07 2.54 7.30 22.38 0.16 2.70 15 17 F -0.15 -5.43 17.27 44.97 0.78 -4.65 15 18 C -0.14 -3.90 10.03 22.31 0.22 -3.68 15 19 C -0.09 -2.33 9.83 22.28 0.22 -2.11 15 20 C -0.05 -1.79 6.31 22.32 0.14 -1.65 15 21 Cl -0.06 -1.81 27.54 -2.72 -0.07 -1.88 15 22 H 0.26 13.44 8.31 -92.71 -0.77 12.67 15 23 H 0.40 14.66 8.94 -92.71 -0.83 13.83 15 24 H 0.14 4.28 8.06 -2.91 -0.02 4.26 15 25 H 0.12 6.14 5.39 -2.91 -0.02 6.13 15 26 H 0.17 3.43 8.06 -2.91 -0.02 3.40 15 27 H 0.17 3.29 8.06 -2.91 -0.02 3.27 15 Total: -1.00 -62.31 258.67 4.23 -58.08 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 0.40 Total: 12.08 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: 3.11 Total: -1.95 kcal Atomic # 7 Polarization: -76.18 SS G_CDS: -1.97 Total: -78.15 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -0.04 Total: -29.48 kcal Atomic # 9 Polarization: -5.43 SS G_CDS: 0.78 Total: -4.65 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 17 Polarization: -1.81 SS G_CDS: -0.07 Total: -1.88 kcal Total: -62.31 4.23 -58.08 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259918339.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.461 kcal (2) G-P(sol) polarization free energy of solvation -62.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds