Wall clock time and date at job start Mon Mar 30 2020 06:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47273 * 89.99733 * 9 7 5 11 11 H 1.48496 * 109.47169 * 210.00187 * 9 7 5 12 12 H 1.48505 * 109.46665 * 329.99637 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21716 * 120.00304 * 0.02562 * 14 13 3 16 16 C 1.46498 * 119.99767 * 180.02562 * 14 13 3 17 17 O 1.34988 * 126.00981 * 359.69431 * 16 14 13 18 18 C 1.33946 * 109.40024 * 179.82544 * 17 16 14 19 19 C 1.35077 * 108.82455 * 0.44050 * 18 17 16 20 20 C 1.36715 * 126.00426 * 180.02562 * 16 14 13 21 21 Cl 1.73594 * 126.66930 * 0.03733 * 20 16 14 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 26 26 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 27 27 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 28 28 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 29 29 H 1.07999 * 125.58483 * 180.13453 * 18 17 16 30 30 H 1.07990 * 126.43740 * 179.73933 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.4429 2.1127 2.0836 11 1 6.4391 -0.3112 2.1545 12 1 6.6131 0.8392 0.0269 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3420 2.6325 -0.4307 16 6 0.0475 3.3189 -2.6188 17 8 0.8116 3.4299 -3.7261 18 6 0.1290 4.0855 -4.6739 19 6 -1.0863 4.4163 -4.1857 20 6 -1.1495 3.9304 -2.8689 21 17 -2.4871 4.0782 -1.7724 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 3.8293 -0.0605 2.9503 28 1 2.2720 2.1232 -1.9977 29 1 0.4926 4.3165 -5.6642 30 1 -1.8632 4.9536 -4.7091 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259951037.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:22 Heat of formation + Delta-G solvation = -32.157197 kcal Electronic energy + Delta-G solvation = -17027.117827 eV Core-core repulsion = 14043.144250 eV Total energy + Delta-G solvation = -2983.973577 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.69917 -38.87777 -36.49642 -35.13972 -32.94311 -32.36764 -31.14320 -29.61618 -26.99614 -23.67444 -22.57334 -21.82702 -20.34886 -19.44353 -18.47047 -16.67848 -16.39848 -15.79435 -15.34821 -14.39150 -14.33633 -13.89282 -13.66819 -13.21719 -13.02014 -12.68286 -12.24503 -12.02229 -11.54547 -11.27471 -11.00498 -10.86607 -10.79695 -10.34379 -10.21839 -9.68922 -9.66486 -9.34728 -9.08867 -8.62623 -8.52668 -7.90371 -6.14517 -4.24101 1.11046 2.11561 2.19047 2.89820 3.24190 3.30954 3.32766 3.69327 3.91032 4.34328 4.66978 4.98096 5.16841 5.20788 5.55462 5.76059 6.02061 6.38298 6.44725 6.63546 6.69520 7.02548 7.17311 7.27869 7.35886 7.58859 7.69114 7.85700 8.13612 8.53961 8.70185 8.95689 9.42652 10.90928 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.030525 B = 0.005842 C = 0.005248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.058096 B = 4792.030319 C = 5334.468835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.054 0.946 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.691 5.691 14 C 0.578 3.422 15 O -0.509 6.509 16 C -0.039 4.039 17 O -0.151 6.151 18 C -0.009 4.009 19 C -0.214 4.214 20 C -0.069 4.069 21 Cl -0.011 7.011 22 H 0.037 0.963 23 H 0.051 0.949 24 H 0.024 0.976 25 H 0.101 0.899 26 H 0.032 0.968 27 H 0.265 0.735 28 H 0.393 0.607 29 H 0.214 0.786 30 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.357 5.896 -12.628 15.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.071 0.929 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.730 3.270 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.338 5.338 14 C 0.361 3.639 15 O -0.387 6.387 16 C -0.093 4.093 17 O -0.045 6.045 18 C -0.079 4.079 19 C -0.234 4.234 20 C -0.099 4.099 21 Cl 0.018 6.982 22 H 0.056 0.944 23 H 0.070 0.930 24 H 0.043 0.957 25 H 0.120 0.880 26 H 0.051 0.949 27 H 0.075 0.925 28 H 0.226 0.774 29 H 0.230 0.770 30 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -6.680 5.631 -11.638 14.552 hybrid contribution 0.941 0.163 -0.382 1.029 sum -5.739 5.794 -12.020 14.525 Atomic orbital electron populations 1.21855 0.98235 0.98282 1.01261 1.21947 0.92690 0.99534 1.02504 1.18915 0.94526 0.89323 0.80410 0.92857 1.21207 0.90489 1.39243 1.06453 0.91969 1.24876 0.98695 0.94695 0.95321 1.69890 1.35199 1.37501 1.09292 0.86434 0.84715 0.77668 0.78220 1.20534 1.21041 1.19823 1.46499 1.13733 1.54506 1.19047 1.16524 0.83905 0.79751 0.83730 1.90912 1.51481 1.59654 1.36644 1.22697 0.91047 1.06618 0.88920 1.84217 1.40704 1.59318 1.20293 1.24239 0.91678 0.97591 0.94386 1.21602 0.99831 1.07772 0.94157 1.21218 0.91485 1.03919 0.93309 1.98371 1.42011 1.96447 1.61337 0.94384 0.92960 0.95654 0.88047 0.94878 0.92486 0.77366 0.76955 0.82114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.51 37.16 0.32 -2.78 16 2 C -0.13 -3.09 5.45 -26.74 -0.15 -3.23 16 3 C 0.27 6.72 2.24 -69.09 -0.15 6.56 16 4 H 0.05 1.52 7.58 -51.93 -0.39 1.13 16 5 C -0.54 -14.01 8.73 -34.44 -0.30 -14.31 16 6 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.41 11.29 55.43 0.63 -23.78 16 9 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 13 N -0.69 -14.62 5.02 -56.30 -0.28 -14.90 16 14 C 0.58 11.92 6.35 -12.93 -0.08 11.84 16 15 O -0.51 -11.75 12.67 5.17 0.07 -11.68 16 16 C -0.04 -0.66 7.13 -36.81 -0.26 -0.92 16 17 O -0.15 -2.14 10.40 4.74 0.05 -2.09 16 18 C -0.01 -0.09 12.07 29.61 0.36 0.26 16 19 C -0.21 -2.44 10.88 -39.85 -0.43 -2.88 16 20 C -0.07 -1.07 6.76 -39.28 -0.27 -1.34 16 21 Cl -0.01 -0.17 27.84 -51.86 -1.44 -1.61 16 22 H 0.04 0.83 5.64 -51.93 -0.29 0.54 16 23 H 0.05 1.23 7.84 -51.93 -0.41 0.82 16 24 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.39 7.47 8.29 -40.82 -0.34 7.13 16 29 H 0.21 1.10 8.06 -52.49 -0.42 0.67 16 30 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 275.24 15.07 4.15 4.15 Total: -1.00 -29.52 275.24 -5.90 -35.41 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -2.97 Total: 4.19 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -1.06 Total: -5.10 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.34 Total: -38.69 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.11 Total: -13.77 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -1.44 Total: -1.61 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.52 -5.90 -35.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259951037.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.256 kcal (2) G-P(sol) polarization free energy of solvation -29.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds