Wall clock time and date at job start Mon Mar 30 2020 06:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47273 * 89.99733 * 9 7 5 11 11 H 1.48496 * 109.47169 * 210.00187 * 9 7 5 12 12 H 1.48505 * 109.46665 * 329.99637 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21716 * 120.00304 * 0.02562 * 14 13 3 16 16 C 1.46498 * 119.99767 * 180.02562 * 14 13 3 17 17 O 1.34988 * 126.00981 * 359.69431 * 16 14 13 18 18 C 1.33946 * 109.40024 * 179.82544 * 17 16 14 19 19 C 1.35077 * 108.82455 * 0.44050 * 18 17 16 20 20 C 1.36715 * 126.00426 * 180.02562 * 16 14 13 21 21 Cl 1.73594 * 126.66930 * 0.03733 * 20 16 14 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 26 26 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 27 27 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 28 28 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 29 29 H 1.07999 * 125.58483 * 180.13453 * 18 17 16 30 30 H 1.07990 * 126.43740 * 179.73933 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.4429 2.1127 2.0836 11 1 6.4391 -0.3112 2.1545 12 1 6.6131 0.8392 0.0269 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3420 2.6325 -0.4307 16 6 0.0475 3.3189 -2.6188 17 8 0.8116 3.4299 -3.7261 18 6 0.1290 4.0855 -4.6739 19 6 -1.0863 4.4163 -4.1857 20 6 -1.1495 3.9304 -2.8689 21 17 -2.4871 4.0782 -1.7724 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 3.8293 -0.0605 2.9503 28 1 2.2720 2.1232 -1.9977 29 1 0.4926 4.3165 -5.6642 30 1 -1.8632 4.9536 -4.7091 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259951037.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:22 Heat of formation + Delta-G solvation = -51.873645 kcal Electronic energy + Delta-G solvation = -17027.972796 eV Core-core repulsion = 14043.144250 eV Total energy + Delta-G solvation = -2984.828547 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.76441 -40.53346 -37.72301 -36.97230 -34.42202 -33.83737 -32.95775 -30.87748 -28.88743 -25.39230 -24.12732 -22.87702 -21.87106 -21.19282 -19.90401 -18.25040 -17.56622 -17.30292 -17.12066 -16.17659 -15.98488 -15.21050 -14.87609 -14.66904 -14.48883 -13.93808 -13.86830 -13.52125 -13.35569 -13.18108 -12.90211 -12.69217 -12.20784 -12.08121 -12.01605 -11.59454 -11.08537 -10.98412 -10.70162 -10.54116 -9.89726 -9.57051 -8.16633 -6.34033 -0.08750 0.93945 1.25974 1.45867 1.45966 1.56758 1.79824 2.16627 2.35743 2.58476 3.13098 3.68420 3.82093 4.22566 4.46848 4.49585 4.56252 4.74840 4.77209 5.05184 5.17569 5.25715 5.41543 5.47892 5.57697 5.65742 5.78662 5.91151 6.14054 6.71145 6.83846 7.25465 7.41777 8.88936 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.030525 B = 0.005842 C = 0.005248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.058096 B = 4792.030319 C = 5334.468835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.121 4.121 3 C 0.278 3.722 4 H 0.006 0.994 5 C -0.550 4.550 6 H 0.070 0.930 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.971 3.029 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.261 1.261 13 N -0.692 5.692 14 C 0.577 3.423 15 O -0.545 6.545 16 C -0.084 4.084 17 O -0.157 6.157 18 C 0.030 3.970 19 C -0.222 4.222 20 C -0.066 4.066 21 Cl -0.023 7.023 22 H 0.039 0.961 23 H 0.030 0.970 24 H 0.047 0.953 25 H 0.076 0.924 26 H 0.041 0.959 27 H 0.266 0.734 28 H 0.404 0.596 29 H 0.272 0.728 30 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.714 6.676 -15.567 17.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.024 0.976 5 C -0.588 4.588 6 H 0.088 0.912 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.795 3.205 10 H -0.204 1.204 11 H -0.208 1.208 12 H -0.185 1.185 13 N -0.340 5.340 14 C 0.363 3.637 15 O -0.426 6.426 16 C -0.137 4.137 17 O -0.052 6.052 18 C -0.039 4.039 19 C -0.241 4.241 20 C -0.096 4.096 21 Cl 0.006 6.994 22 H 0.058 0.942 23 H 0.049 0.951 24 H 0.066 0.934 25 H 0.094 0.906 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.239 0.761 29 H 0.288 0.712 30 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -6.038 6.422 -14.609 17.062 hybrid contribution 0.671 0.013 0.397 0.780 sum -5.367 6.435 -14.212 16.499 Atomic orbital electron populations 1.21687 0.96909 0.99331 1.00264 1.21792 0.93783 0.98882 1.01504 1.18496 0.93955 0.89328 0.80679 0.97613 1.21539 0.91210 1.39225 1.06865 0.91150 1.25746 1.03347 0.94236 0.94923 1.70038 1.37108 1.38202 1.09801 0.85366 0.79035 0.77474 0.78598 1.20418 1.20834 1.18510 1.46226 1.14621 1.54996 1.18130 1.16860 0.82973 0.78994 0.84855 1.90878 1.52248 1.60911 1.38552 1.21804 0.92510 1.10201 0.89214 1.84206 1.40857 1.60021 1.20110 1.25473 0.90465 0.93214 0.94792 1.22021 1.01483 1.08313 0.92292 1.21663 0.90391 1.02899 0.94645 1.98368 1.42404 1.96372 1.62231 0.94175 0.95116 0.93409 0.90585 0.94058 0.92483 0.76111 0.71225 0.78794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.69 8.51 71.98 0.61 -5.07 16 2 C -0.12 -5.99 5.45 30.59 0.17 -5.82 16 3 C 0.28 14.39 2.24 44.24 0.10 14.49 16 4 H 0.01 0.36 7.58 -2.39 -0.02 0.34 16 5 C -0.55 -29.23 8.73 25.60 0.22 -29.00 16 6 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 7 C 0.02 0.96 5.29 84.65 0.45 1.41 16 8 N -0.91 -52.00 11.29 21.45 0.24 -51.76 16 9 Si 0.97 41.95 29.54 68.60 2.03 43.97 16 10 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 12 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 13 N -0.69 -29.92 5.02 -450.26 -2.26 -32.18 16 14 C 0.58 24.37 6.35 86.40 0.55 24.92 16 15 O -0.55 -26.28 12.67 -4.40 -0.06 -26.33 16 16 C -0.08 -2.80 7.13 24.07 0.17 -2.63 16 17 O -0.16 -4.03 10.40 -5.95 -0.06 -4.09 16 18 C 0.03 0.46 12.07 67.09 0.81 1.27 16 19 C -0.22 -4.19 10.88 22.09 0.24 -3.95 16 20 C -0.07 -1.94 6.76 22.47 0.15 -1.79 16 21 Cl -0.02 -0.71 27.84 -2.72 -0.08 -0.79 16 22 H 0.04 1.79 5.64 -2.39 -0.01 1.77 16 23 H 0.03 1.49 7.84 -2.39 -0.02 1.47 16 24 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 25 H 0.08 4.18 5.95 -2.39 -0.01 4.17 16 26 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 28 H 0.40 15.38 8.29 -92.71 -0.77 14.62 16 29 H 0.27 0.79 8.06 -2.91 -0.02 0.77 16 30 H 0.19 2.30 8.06 -2.92 -0.02 2.27 16 Total: -1.00 -67.30 275.24 3.70 -63.60 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 0.41 Total: 13.77 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 3.47 Total: -6.19 kcal Atomic # 7 Polarization: -81.92 SS G_CDS: -2.02 Total: -83.94 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -0.12 Total: -30.43 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -0.08 Total: -0.79 kcal Total: -67.30 3.70 -63.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259951037.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.727 kcal (2) G-P(sol) polarization free energy of solvation -67.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds