Wall clock time and date at job start Mon Mar 30 2020 06:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 119.99847 * 2 1 4 4 C 1.52998 * 109.47408 * 269.99733 * 3 2 1 5 5 C 1.50702 * 109.47240 * 180.02562 * 4 3 2 6 6 H 1.07999 * 119.99568 * 359.97438 * 5 4 3 7 7 C 1.37870 * 119.99765 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00400 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99718 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47227 * 89.99976 * 9 7 5 11 11 H 1.48503 * 109.46948 * 209.99858 * 9 7 5 12 12 H 1.48500 * 109.47299 * 329.99936 * 9 7 5 13 13 C 1.34774 * 119.99618 * 180.02562 * 2 1 3 14 14 O 1.21698 * 119.99969 * 183.38917 * 13 2 1 15 15 C 1.46656 * 120.00414 * 3.37954 * 13 2 1 16 16 C 1.36553 * 125.97700 * 173.22042 * 15 13 2 17 17 C 1.40429 * 106.71117 * 179.97438 * 16 15 13 18 18 Cl 1.73594 * 126.45266 * 180.02562 * 17 16 15 19 19 C 1.35199 * 107.09207 * 0.26725 * 17 16 15 20 20 O 1.33982 * 108.75636 * 359.56425 * 19 17 16 21 21 H 1.09000 * 109.47229 * 264.00888 * 1 2 3 22 22 H 1.09005 * 109.47319 * 24.00941 * 1 2 3 23 23 H 1.09001 * 109.47314 * 144.00704 * 1 2 3 24 24 H 1.09001 * 109.47122 * 30.00159 * 3 2 1 25 25 H 1.09007 * 109.46648 * 150.00004 * 3 2 1 26 26 H 1.09001 * 109.47327 * 300.00301 * 4 3 2 27 27 H 1.09002 * 109.46534 * 59.99936 * 4 3 2 28 28 H 0.97000 * 120.00258 * 180.02562 * 8 7 5 29 29 H 1.08003 * 126.64617 * 359.94889 * 16 15 13 30 30 H 1.08007 * 125.62035 * 179.70608 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2066 3.0153 -1.4424 6 1 3.4764 3.4829 -0.5071 7 6 3.5509 3.6124 -2.6364 8 7 3.2209 3.0437 -3.7754 9 14 4.4849 5.2302 -2.6363 10 1 5.9450 4.9589 -2.6368 11 1 4.1259 6.0091 -3.8486 12 1 4.1265 6.0087 -1.4236 13 6 2.1388 -1.1672 -0.0005 14 8 3.3542 -1.1682 0.0618 15 6 1.4074 -2.4362 -0.0760 16 6 1.9635 -3.6755 -0.2153 17 6 0.9016 -4.5940 -0.2418 18 17 1.0323 -6.3176 -0.4015 19 6 -0.2421 -3.8825 -0.1249 20 8 0.0676 -2.5832 -0.0193 21 1 -0.3634 -0.1073 1.0220 22 1 -0.3634 0.9388 -0.4182 23 1 -0.3634 -0.8315 -0.6039 24 1 1.6084 2.0284 0.5139 25 1 3.1499 1.1383 0.5139 26 1 3.0416 0.9508 -1.9563 27 1 1.5001 1.8407 -1.9563 28 1 3.4635 3.4637 -4.6154 29 1 3.0162 -3.9049 -0.2910 30 1 -1.2407 -4.2939 -0.1156 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259971420.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:37 Heat of formation + Delta-G solvation = -24.715196 kcal Electronic energy + Delta-G solvation = -16506.785893 eV Core-core repulsion = 13523.135025 eV Total energy + Delta-G solvation = -2983.650868 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.94740 -39.24093 -36.90976 -35.61548 -33.21341 -32.91580 -30.76188 -29.38712 -26.61155 -25.25818 -22.93577 -22.00963 -21.08666 -19.68203 -17.67405 -16.75540 -16.61920 -16.36780 -15.39482 -14.81635 -14.43646 -14.31360 -13.69135 -13.45226 -13.23641 -12.87820 -12.66062 -12.58338 -12.30081 -11.80200 -11.37353 -11.17841 -10.93810 -10.70767 -10.03994 -9.94695 -9.85748 -9.81502 -9.20456 -8.85570 -8.37874 -8.12577 -6.02850 -4.06449 0.94783 1.78622 1.96320 2.58473 3.28010 3.32179 3.38129 3.40682 3.45903 4.40324 4.46062 4.61334 4.99597 5.30635 5.33562 5.41219 5.52717 5.63325 5.91114 5.94686 6.08318 6.45926 6.52517 6.76066 6.81981 7.49224 7.64736 7.82696 7.95821 8.27186 8.39474 8.99883 9.57767 11.08627 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.043422 B = 0.004018 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.679307 B = 6967.176266 C = 7164.715430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.597 5.597 3 C 0.116 3.884 4 C 0.012 3.988 5 C -0.522 4.522 6 H 0.058 0.942 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.895 3.105 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.273 1.273 13 C 0.591 3.409 14 O -0.513 6.513 15 C -0.043 4.043 16 C -0.122 4.122 17 C -0.140 4.140 18 Cl -0.033 7.033 19 C -0.003 4.003 20 O -0.143 6.143 21 H 0.054 0.946 22 H 0.081 0.919 23 H 0.076 0.924 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.022 0.978 27 H 0.017 0.983 28 H 0.261 0.739 29 H 0.169 0.831 30 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.881 -14.566 7.854 19.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.328 5.328 3 C -0.004 4.004 4 C -0.026 4.026 5 C -0.561 4.561 6 H 0.076 0.924 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.723 3.277 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.198 1.198 13 C 0.376 3.624 14 O -0.391 6.391 15 C -0.095 4.095 16 C -0.143 4.143 17 C -0.168 4.168 18 Cl -0.005 7.005 19 C -0.074 4.074 20 O -0.038 6.038 21 H 0.073 0.927 22 H 0.100 0.900 23 H 0.094 0.906 24 H 0.088 0.912 25 H 0.096 0.904 26 H 0.040 0.960 27 H 0.036 0.964 28 H 0.071 0.929 29 H 0.186 0.814 30 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -9.415 -14.376 7.726 18.841 hybrid contribution 0.418 0.417 -0.274 0.651 sum -8.998 -13.959 7.452 18.203 Atomic orbital electron populations 1.21975 0.79596 1.03723 1.01572 1.48028 1.07310 1.06762 1.70695 1.22026 0.95833 0.80637 1.01931 1.19412 0.97218 0.96533 0.89459 1.21072 1.36381 1.06055 0.92569 0.92393 1.24997 0.95919 0.97784 0.95550 1.69972 1.46595 1.39307 0.97311 0.86545 0.80247 0.83417 0.77494 1.20557 1.21220 1.19793 1.16597 0.86271 0.81121 0.78370 1.90901 1.11799 1.85651 1.50745 1.22363 0.80042 0.96552 1.10583 1.21730 1.00934 0.89555 1.02046 1.21053 0.94700 0.87157 1.13872 1.98349 1.98281 1.07115 1.96708 1.24239 0.99574 0.80648 1.02929 1.84462 1.23893 1.25734 1.69741 0.92700 0.90002 0.90592 0.91208 0.90444 0.95971 0.96420 0.92915 0.81374 0.76769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.01 9.63 59.85 0.58 1.59 16 2 N -0.60 -10.82 2.87 -183.13 -0.53 -11.35 16 3 C 0.12 2.42 5.34 -4.04 -0.02 2.40 16 4 C 0.01 0.30 5.30 -27.88 -0.15 0.16 16 5 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 6 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 9 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 13 C 0.59 11.12 7.64 -12.86 -0.10 11.03 16 14 O -0.51 -11.44 16.43 5.19 0.09 -11.36 16 15 C -0.04 -0.65 6.77 -36.79 -0.25 -0.90 16 16 C -0.12 -1.68 10.63 -39.37 -0.42 -2.10 16 17 C -0.14 -1.59 6.71 -39.84 -0.27 -1.85 16 18 Cl -0.03 -0.33 29.32 -51.86 -1.52 -1.85 16 19 C 0.00 -0.03 12.06 29.65 0.36 0.33 16 20 O -0.14 -1.74 7.29 4.89 0.04 -1.70 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 22 H 0.08 1.10 8.03 -51.93 -0.42 0.68 16 23 H 0.08 0.97 5.40 -51.93 -0.28 0.69 16 24 H 0.07 1.31 8.07 -51.93 -0.42 0.89 16 25 H 0.08 1.71 7.38 -51.92 -0.38 1.32 16 26 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.17 2.27 8.06 -52.48 -0.42 1.85 16 30 H 0.22 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 284.16 15.07 4.28 4.28 Total: -1.00 -32.53 284.16 -5.76 -38.29 By element: Atomic # 1 Polarization: -0.75 SS G_CDS: -3.15 Total: -3.90 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -0.68 Total: -2.78 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.21 Total: -37.59 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.12 Total: -13.06 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.52 Total: -1.85 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.53 -5.76 -38.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259971420.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.579 kcal (2) G-P(sol) polarization free energy of solvation -32.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds