Wall clock time and date at job start Mon Mar 30 2020 07:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38260 * 119.97241 * 2 1 4 4 C 1.38276 * 120.01302 * 180.02562 * 3 2 1 5 5 Cl 1.73608 * 120.02206 * 180.02562 * 4 3 2 6 6 C 1.38584 * 119.95369 * 359.70941 * 4 3 2 7 7 F 1.35099 * 120.03776 * 180.29819 * 6 4 3 8 8 C 1.38407 * 119.93355 * 0.54534 * 6 4 3 9 9 C 1.50703 * 120.00312 * 179.75021 * 8 6 4 10 10 H 1.08996 * 109.47343 * 324.72261 * 9 8 6 11 11 N 1.46905 * 109.47075 * 204.72419 * 9 8 6 12 12 C 1.53001 * 109.47072 * 84.72596 * 9 8 6 13 13 C 1.50703 * 109.47072 * 185.00098 * 12 9 8 14 14 H 1.07998 * 120.00155 * 359.97438 * 13 12 9 15 15 C 1.37871 * 119.99920 * 180.02562 * 13 12 9 16 16 N 1.31514 * 120.00383 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 120.00062 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46978 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.46836 * 120.00019 * 17 15 13 20 20 H 1.48500 * 109.47131 * 239.99797 * 17 15 13 21 21 C 1.38215 * 119.96797 * 180.02562 * 2 1 3 22 22 H 1.08997 * 109.47052 * 269.98068 * 1 2 3 23 23 H 1.09007 * 109.47250 * 29.97471 * 1 2 3 24 24 H 1.08997 * 109.47550 * 149.96825 * 1 2 3 25 25 H 1.08003 * 119.99329 * 0.02562 * 3 2 1 26 26 H 1.00901 * 110.99869 * 176.04968 * 11 9 8 27 27 H 1.00896 * 110.99543 * 300.00090 * 11 9 8 28 28 H 1.08999 * 109.47045 * 304.99692 * 12 9 8 29 29 H 1.09002 * 109.47037 * 64.99916 * 12 9 8 30 30 H 0.96999 * 120.00227 * 180.02562 * 16 15 13 31 31 H 1.07999 * 119.97813 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1977 0.0000 4 6 3.5805 1.1987 -0.0005 5 17 4.4480 2.7025 0.0001 6 6 4.2733 -0.0015 0.0050 7 9 5.6242 -0.0025 0.0106 8 6 3.5798 -1.1993 -0.0003 9 6 4.3316 -2.5054 0.0000 10 1 5.2423 -2.4006 -0.5895 11 7 3.4879 -3.5562 -0.5849 12 6 4.6951 -2.8843 1.4371 13 6 5.5514 -4.1243 1.4284 14 1 5.8102 -4.5953 0.4917 15 6 6.0037 -4.6581 2.6165 16 7 5.6882 -4.0848 3.7573 17 14 7.0646 -6.1956 2.6058 18 1 7.2740 -6.6428 1.2052 19 1 8.3774 -5.8954 3.2317 20 1 6.3853 -7.2711 3.3720 21 6 2.1974 -1.1974 -0.0005 22 1 -0.3633 -0.0003 1.0276 23 1 -0.3634 0.8903 -0.5135 24 1 -0.3634 -0.8897 -0.5143 25 1 1.6571 2.1327 0.0004 26 1 3.9921 -4.4274 -0.6552 27 1 2.6367 -3.6727 -0.0559 28 1 5.2458 -2.0657 1.9004 29 1 3.7839 -3.0759 2.0039 30 1 6.0067 -4.4602 4.5931 31 1 1.6565 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259985788.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:35 Heat of formation + Delta-G solvation = -64.134811 kcal Electronic energy + Delta-G solvation = -16753.100904 eV Core-core repulsion = 13780.113463 eV Total energy + Delta-G solvation = -2972.987441 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.068 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.96335 -40.56933 -37.89215 -37.11167 -34.64251 -33.17429 -31.37494 -30.05187 -27.62577 -26.56152 -24.16170 -22.85885 -21.17426 -19.04692 -18.51244 -17.94889 -16.87407 -16.61945 -16.54882 -16.18686 -15.35266 -14.92999 -14.69943 -14.52786 -14.42360 -14.20383 -13.76127 -13.54368 -13.21002 -13.03646 -12.83704 -12.66916 -12.30107 -12.24164 -12.16130 -11.91381 -11.79074 -11.22065 -10.66079 -9.89648 -9.57121 -9.35784 -8.25414 -6.38054 -0.02785 0.09148 0.93471 1.37597 1.39206 1.51648 2.35390 2.43352 3.07740 3.12244 3.52272 3.78982 3.88862 4.06065 4.23024 4.30329 4.57711 4.72666 4.77841 4.87789 4.92415 4.96044 5.20614 5.27835 5.29964 5.46429 5.49604 5.69891 5.77437 6.09785 6.28558 6.65825 6.77442 7.32262 8.86224 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.024739 B = 0.005924 C = 0.005214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.547793 B = 4725.194440 C = 5368.603513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.076 4.076 3 C -0.092 4.092 4 C -0.074 4.074 5 Cl -0.055 7.055 6 C 0.069 3.931 7 F -0.144 7.144 8 C -0.095 4.095 9 C 0.141 3.859 10 H 0.064 0.936 11 N -0.822 5.822 12 C 0.014 3.986 13 C -0.537 4.537 14 H 0.066 0.934 15 C 0.003 3.997 16 N -0.931 5.931 17 Si 0.966 3.034 18 H -0.259 1.259 19 H -0.284 1.284 20 H -0.276 1.276 21 C -0.082 4.082 22 H 0.084 0.916 23 H 0.090 0.910 24 H 0.082 0.918 25 H 0.171 0.829 26 H 0.349 0.651 27 H 0.339 0.661 28 H -0.020 1.020 29 H 0.000 1.000 30 H 0.263 0.737 31 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.029 9.227 -8.216 16.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.076 4.076 3 C -0.110 4.110 4 C -0.102 4.102 5 Cl -0.026 7.026 6 C 0.049 3.951 7 F -0.123 7.123 8 C -0.096 4.096 9 C 0.029 3.971 10 H 0.082 0.918 11 N -0.351 5.351 12 C -0.024 4.024 13 C -0.575 4.575 14 H 0.085 0.915 15 C -0.195 4.195 16 N -0.571 5.571 17 Si 0.791 3.209 18 H -0.182 1.182 19 H -0.210 1.210 20 H -0.202 1.202 21 C -0.100 4.100 22 H 0.103 0.897 23 H 0.109 0.891 24 H 0.101 0.899 25 H 0.189 0.811 26 H 0.163 0.837 27 H 0.152 0.848 28 H -0.002 1.002 29 H 0.018 0.982 30 H 0.072 0.928 31 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -10.902 9.808 -8.704 17.053 hybrid contribution 1.694 -1.013 1.467 2.459 sum -9.208 8.795 -7.237 14.646 Atomic orbital electron populations 1.20874 0.86968 1.04775 1.03840 1.20308 0.98684 0.91018 0.97599 1.21133 0.89632 1.00531 0.99707 1.21046 0.94076 0.85513 1.09567 1.98354 1.77019 1.30146 1.97047 1.17584 0.77004 0.93699 1.06809 1.91464 1.29474 1.97317 1.94049 1.20136 0.95752 0.93176 1.00560 1.20058 0.94003 0.88189 0.94855 0.91781 1.59249 1.08919 1.11102 1.55851 1.19618 0.95402 0.95296 0.92112 1.21545 1.31992 1.10962 0.93032 0.91537 1.25961 0.97580 1.00817 0.95174 1.70115 1.46749 1.41949 0.98263 0.85378 0.78031 0.78730 0.78777 1.18232 1.21010 1.20205 1.21086 0.91427 0.99880 0.97657 0.89712 0.89129 0.89932 0.81113 0.83719 0.84755 1.00157 0.98217 0.92772 0.83111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 10.01 71.24 0.71 -0.83 16 2 C -0.08 -1.75 5.88 -19.87 -0.12 -1.87 16 3 C -0.09 -2.20 9.48 22.28 0.21 -1.98 16 4 C -0.07 -2.30 6.33 22.36 0.14 -2.16 16 5 Cl -0.05 -1.54 28.62 -2.72 -0.08 -1.62 16 6 C 0.07 2.63 7.22 22.39 0.16 2.79 16 7 F -0.14 -6.16 16.15 44.97 0.73 -5.43 16 8 C -0.09 -3.53 5.06 -19.82 -0.10 -3.63 16 9 C 0.14 5.96 2.76 44.17 0.12 6.08 16 10 H 0.06 2.93 7.80 -2.39 -0.02 2.91 16 11 N -0.82 -29.16 8.79 -171.79 -1.51 -30.67 16 12 C 0.01 0.75 4.60 29.85 0.14 0.89 16 13 C -0.54 -29.61 8.55 25.60 0.22 -29.39 16 14 H 0.07 3.47 7.14 -2.91 -0.02 3.45 16 15 C 0.00 0.17 5.46 84.65 0.46 0.63 16 16 N -0.93 -56.36 13.29 21.44 0.28 -56.07 16 17 Si 0.97 43.71 29.54 68.60 2.03 45.74 16 18 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 19 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 20 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 21 C -0.08 -2.42 8.92 22.26 0.20 -2.22 16 22 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.09 0.92 8.09 -2.38 -0.02 0.90 16 24 H 0.08 1.04 8.08 -2.39 -0.02 1.02 16 25 H 0.17 2.86 8.06 -2.91 -0.02 2.83 16 26 H 0.35 12.66 7.90 -89.69 -0.71 11.95 16 27 H 0.34 10.92 7.21 -89.70 -0.65 10.28 16 28 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 29 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 30 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 31 H 0.15 3.92 6.29 -2.91 -0.02 3.90 16 Total: -1.00 -65.75 285.28 3.41 -62.34 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -0.18 Total: 17.41 kcal Atomic # 6 Polarization: -33.84 SS G_CDS: 2.15 Total: -31.69 kcal Atomic # 7 Polarization: -85.52 SS G_CDS: -1.23 Total: -86.74 kcal Atomic # 9 Polarization: -6.16 SS G_CDS: 0.73 Total: -5.43 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.08 Total: -1.62 kcal Total: -65.75 3.41 -62.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259985788.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.799 kcal (2) G-P(sol) polarization free energy of solvation -65.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds