Wall clock time and date at job start Mon Mar 30 2020 06:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31507 * 120.00093 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99676 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47028 * 90.00202 * 8 6 4 10 10 H 1.48493 * 109.46961 * 209.99772 * 8 6 4 11 11 H 1.48498 * 109.47538 * 330.00225 * 8 6 4 12 12 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 13 13 C 1.40919 * 126.28532 * 300.02361 * 12 2 1 14 14 C 1.34947 * 107.41847 * 179.97438 * 13 12 2 15 15 Br 1.89095 * 125.89468 * 180.02562 * 14 13 12 16 16 N 1.36347 * 108.20503 * 0.02562 * 14 13 12 17 17 C 1.46503 * 125.64009 * 179.97438 * 16 14 13 18 18 C 1.34830 * 126.28622 * 119.71223 * 12 2 1 19 19 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 20 20 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 21 21 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 22 22 H 0.96999 * 120.00118 * 179.97438 * 7 6 4 23 23 H 1.08000 * 126.28866 * 359.96190 * 13 12 2 24 24 H 1.09005 * 109.46987 * 89.97554 * 17 16 14 25 25 H 1.09000 * 109.47441 * 209.97472 * 17 16 14 26 26 H 1.08998 * 109.47090 * 329.97813 * 17 16 14 27 27 H 1.08007 * 125.88305 * 0.02562 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9437 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.6307 -0.5440 4.4118 10 1 1.3447 -0.9490 5.1122 11 1 2.4882 -2.5654 3.7122 12 6 2.0323 -0.7104 -1.2305 13 6 1.7744 -2.0500 -1.5837 14 6 2.4054 -2.2882 -2.7526 15 35 2.4047 -3.9251 -3.6994 16 7 3.0435 -1.1449 -3.1329 17 6 3.8463 -0.9788 -4.3471 18 6 2.8062 -0.1793 -2.1985 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 0.7091 1.1614 3.4844 23 1 1.1810 -2.7563 -1.0221 24 1 3.2064 -0.6408 -5.1623 25 1 4.6274 -0.2399 -4.1681 26 1 4.3022 -1.9320 -4.6145 27 1 3.1767 0.8348 -2.2277 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259988081.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:40 Heat of formation + Delta-G solvation = 28.219916 kcal Electronic energy + Delta-G solvation = -11913.244103 eV Core-core repulsion = 9717.460988 eV Total energy + Delta-G solvation = -2195.783115 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 257.011 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.01589 -36.45260 -33.89377 -32.71230 -31.61347 -28.64340 -27.15052 -26.82715 -23.26814 -20.81064 -20.22296 -18.23112 -17.58923 -16.41311 -16.20520 -14.92999 -14.82484 -14.57248 -13.70286 -13.60467 -13.32836 -13.19056 -13.00351 -12.78777 -12.69048 -12.21630 -11.98410 -11.72805 -11.50894 -11.25794 -10.90455 -10.38614 -9.25867 -8.83165 -8.01256 -6.13576 0.41108 1.15913 1.43951 1.44918 1.55405 2.14235 2.20370 2.51577 3.25401 3.99442 4.28990 4.42810 4.65711 4.66776 4.74097 4.96553 5.08851 5.29765 5.37476 5.40542 5.67329 5.89039 6.01289 6.17292 6.31483 6.41509 6.55238 6.95294 7.53407 9.02756 Molecular weight = 257.01amu Principal moments of inertia in cm(-1) A = 0.034347 B = 0.006423 C = 0.005942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.006396 B = 4358.345492 C = 4710.815709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.103 3.897 3 H 0.006 0.994 4 C -0.513 4.513 5 H 0.045 0.955 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.950 3.050 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.272 1.272 12 C -0.143 4.143 13 C -0.160 4.160 14 C -0.011 4.011 15 Br 0.009 6.991 16 N -0.439 5.439 17 C 0.064 3.936 18 C -0.010 4.010 19 H 0.057 0.943 20 H 0.022 0.978 21 H 0.023 0.977 22 H 0.260 0.740 23 H 0.124 0.876 24 H 0.088 0.912 25 H 0.106 0.894 26 H 0.090 0.910 27 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.051 -6.661 -15.808 17.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.084 3.916 3 H 0.024 0.976 4 C -0.551 4.551 5 H 0.063 0.937 6 C -0.185 4.185 7 N -0.559 5.559 8 Si 0.776 3.224 9 H -0.202 1.202 10 H -0.208 1.208 11 H -0.197 1.197 12 C -0.150 4.150 13 C -0.189 4.189 14 C -0.200 4.200 15 Br 0.092 6.908 16 N -0.117 5.117 17 C -0.076 4.076 18 C -0.141 4.141 19 H 0.075 0.925 20 H 0.041 0.959 21 H 0.042 0.958 22 H 0.069 0.931 23 H 0.142 0.858 24 H 0.107 0.893 25 H 0.124 0.876 26 H 0.109 0.891 27 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 5.206 -7.115 -16.376 18.598 hybrid contribution 0.092 0.046 1.315 1.319 sum 5.298 -7.069 -15.061 17.460 Atomic orbital electron populations 1.21557 0.98051 0.98588 0.99244 1.17097 0.92386 0.93328 0.88827 0.97609 1.21403 1.30386 1.11907 0.91421 0.93718 1.25677 0.95481 0.95799 1.01561 1.70006 1.37950 1.24201 1.23760 0.85674 0.78122 0.79087 0.79480 1.20193 1.20806 1.19718 1.20087 1.02456 0.94721 0.97730 1.20677 1.05028 0.97300 0.95882 1.21869 1.09623 0.88552 0.99979 1.96570 1.98463 1.21622 1.74164 1.43993 1.39795 1.07875 1.20018 1.22352 0.95894 1.05127 0.84203 1.21979 1.05625 0.95299 0.91173 0.92458 0.95886 0.95809 0.93079 0.85783 0.89318 0.87567 0.89101 0.79911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.94 8.87 71.98 0.64 -5.30 15 2 C 0.10 5.38 2.67 -12.29 -0.03 5.35 15 3 H 0.01 0.32 8.11 -2.39 -0.02 0.30 15 4 C -0.51 -29.23 8.43 25.60 0.22 -29.01 15 5 H 0.04 2.58 7.74 -2.91 -0.02 2.56 15 6 C 0.01 0.72 5.30 84.66 0.45 1.17 15 7 N -0.92 -53.83 11.32 21.45 0.24 -53.59 15 8 Si 0.95 44.75 29.54 68.60 2.03 46.78 15 9 H -0.28 -12.66 7.11 99.48 0.71 -11.95 15 10 H -0.28 -12.97 7.11 99.48 0.71 -12.27 15 11 H -0.27 -12.63 7.11 99.48 0.71 -11.92 15 12 C -0.14 -6.41 4.76 -19.99 -0.10 -6.51 15 13 C -0.16 -6.73 10.38 22.17 0.23 -6.50 15 14 C -0.01 -0.39 7.30 83.23 0.61 0.22 15 15 Br 0.01 0.23 33.33 -20.37 -0.68 -0.45 15 16 N -0.44 -13.60 3.15 -541.66 -1.71 -15.31 15 17 C 0.06 1.24 10.92 127.77 1.40 2.63 15 18 C -0.01 -0.36 11.33 83.19 0.94 0.58 15 19 H 0.06 3.18 6.07 -2.39 -0.01 3.16 15 20 H 0.02 1.04 8.14 -2.39 -0.02 1.02 15 21 H 0.02 1.16 8.04 -2.39 -0.02 1.14 15 22 H 0.26 14.47 8.31 -92.71 -0.77 13.70 15 23 H 0.12 5.38 8.06 -2.91 -0.02 5.36 15 24 H 0.09 1.41 8.14 -2.38 -0.02 1.40 15 25 H 0.11 1.60 8.14 -2.39 -0.02 1.58 15 26 H 0.09 1.56 7.63 -2.39 -0.02 1.54 15 27 H 0.18 5.68 8.06 -2.91 -0.02 5.65 15 Total: -1.00 -64.03 255.06 5.39 -58.65 By element: Atomic # 1 Polarization: 0.13 SS G_CDS: 1.15 Total: 1.28 kcal Atomic # 6 Polarization: -41.72 SS G_CDS: 4.35 Total: -37.37 kcal Atomic # 7 Polarization: -67.43 SS G_CDS: -1.46 Total: -68.89 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 35 Polarization: 0.23 SS G_CDS: -0.68 Total: -0.45 kcal Total: -64.03 5.39 -58.65 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259988081.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.868 kcal (2) G-P(sol) polarization free energy of solvation -64.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds