Wall clock time and date at job start Mon Mar 30 2020 07:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38234 * 119.97454 * 2 1 4 4 C 1.38412 * 119.98623 * 179.97438 * 3 2 1 5 5 F 1.35094 * 120.03211 * 179.97438 * 4 3 2 6 6 C 1.38586 * 119.93571 * 359.72419 * 4 3 2 7 7 Cl 1.73604 * 120.02552 * 180.29752 * 6 4 3 8 8 C 1.38278 * 119.95258 * 0.50344 * 6 4 3 9 9 C 1.50701 * 119.99783 * 179.79054 * 8 6 4 10 10 H 1.09011 * 109.46706 * 11.30395 * 9 8 6 11 11 N 1.46899 * 109.47223 * 131.29527 * 9 8 6 12 12 C 1.50696 * 109.47485 * 251.30255 * 9 8 6 13 13 H 1.08002 * 119.99799 * 359.97438 * 12 9 8 14 14 C 1.37880 * 119.99956 * 179.97438 * 12 9 8 15 15 N 1.31508 * 120.00125 * 359.97438 * 14 12 9 16 16 Si 1.86802 * 119.99802 * 179.72407 * 14 12 9 17 17 H 1.48500 * 109.47056 * 180.27445 * 16 14 12 18 18 H 1.48502 * 109.47206 * 300.27401 * 16 14 12 19 19 H 1.48506 * 109.47290 * 60.27526 * 16 14 12 20 20 C 1.38218 * 119.97294 * 179.97438 * 2 1 3 21 21 C 1.50702 * 119.97176 * 0.02562 * 20 2 1 22 22 H 1.08997 * 109.47388 * 270.02674 * 1 2 3 23 23 H 1.09007 * 109.46989 * 30.02979 * 1 2 3 24 24 H 1.08998 * 109.47364 * 150.02249 * 1 2 3 25 25 H 1.07995 * 120.01213 * 0.02562 * 3 2 1 26 26 H 1.00894 * 111.00164 * 310.36101 * 11 9 8 27 27 H 1.00904 * 110.99683 * 74.31471 * 11 9 8 28 28 H 0.96998 * 120.00269 * 359.72539 * 15 14 12 29 29 H 1.08998 * 109.47030 * 264.57436 * 21 20 2 30 30 H 1.08998 * 109.47122 * 24.57817 * 21 20 2 31 31 H 1.08997 * 109.47006 * 144.57353 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1975 0.0000 4 6 3.5817 1.1977 0.0005 5 9 4.2576 2.3674 0.0000 6 6 4.2736 -0.0031 0.0069 7 17 6.0096 -0.0054 0.0153 8 6 3.5801 -1.1994 0.0021 9 6 4.3314 -2.5058 0.0042 10 1 5.3852 -2.3185 0.2110 11 7 3.7782 -3.3872 1.0410 12 6 4.1936 -3.1668 -1.3431 13 1 3.6190 -2.6889 -2.1227 14 6 4.8010 -4.3816 -1.5803 15 7 5.5011 -4.9633 -0.6310 16 14 4.6238 -5.2046 -3.2478 17 1 5.3602 -6.4942 -3.2442 18 1 3.1868 -5.4560 -3.5255 19 1 5.1834 -4.3180 -4.2995 20 6 2.1975 -1.1973 0.0005 21 6 1.4427 -2.5017 0.0005 22 1 -0.3634 0.0005 1.0276 23 1 -0.3633 0.8898 -0.5143 24 1 -0.3634 -0.8902 -0.5135 25 1 1.6574 2.1326 0.0004 26 1 3.7034 -2.9044 1.9238 27 1 2.8857 -3.7630 0.7576 28 1 5.5935 -4.5358 0.2347 29 1 1.3445 -2.8646 1.0236 30 1 0.4521 -2.3482 -0.4273 31 1 1.9858 -3.2357 -0.5948 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259989447.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:36 Heat of formation + Delta-G solvation = -50.081539 kcal Electronic energy + Delta-G solvation = -17361.933181 eV Core-core repulsion = 14389.555136 eV Total energy + Delta-G solvation = -2972.378046 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.02755 -40.99451 -37.63509 -37.03315 -33.94543 -33.78411 -31.40502 -29.08272 -27.62893 -27.05520 -24.36167 -22.16569 -21.87103 -19.13568 -18.21737 -17.84774 -16.87400 -16.79531 -16.30309 -15.71415 -15.41072 -15.13094 -14.81211 -14.59212 -14.27267 -13.86505 -13.61015 -13.51127 -13.19071 -12.78517 -12.75030 -12.54270 -12.40951 -12.03660 -11.93541 -11.91673 -11.65145 -10.72802 -10.44370 -9.70956 -9.41817 -9.17440 -8.36240 -6.20908 -0.04802 0.12281 1.07555 1.57468 1.64025 1.82782 2.38096 2.65608 3.04073 3.34211 3.63402 3.79697 4.02374 4.07875 4.31605 4.46856 4.58922 4.70316 4.74081 4.83266 4.87329 4.91129 5.01762 5.18164 5.36739 5.42267 5.67384 5.81444 5.95619 6.23405 6.69079 6.79171 7.08728 7.67051 9.00600 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.020182 B = 0.008895 C = 0.007194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.063495 B = 3147.179149 C = 3891.378793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.053 4.053 3 C -0.150 4.150 4 C 0.087 3.913 5 F -0.137 7.137 6 C -0.101 4.101 7 Cl -0.068 7.068 8 C -0.061 4.061 9 C 0.239 3.761 10 H 0.024 0.976 11 N -0.843 5.843 12 C -0.606 4.606 13 H 0.038 0.962 14 C -0.008 4.008 15 N -0.918 5.918 16 Si 1.103 2.897 17 H -0.289 1.289 18 H -0.267 1.267 19 H -0.283 1.283 20 C -0.088 4.088 21 C -0.128 4.128 22 H 0.092 0.908 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.172 0.828 26 H 0.314 0.686 27 H 0.344 0.656 28 H 0.280 0.720 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.474 10.269 1.866 15.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.053 4.053 3 C -0.169 4.169 4 C 0.067 3.933 5 F -0.116 7.116 6 C -0.129 4.129 7 Cl -0.039 7.039 8 C -0.064 4.064 9 C 0.129 3.871 10 H 0.042 0.958 11 N -0.376 5.376 12 C -0.644 4.644 13 H 0.057 0.943 14 C -0.212 4.212 15 N -0.553 5.553 16 Si 0.927 3.073 17 H -0.215 1.215 18 H -0.192 1.192 19 H -0.209 1.209 20 C -0.088 4.088 21 C -0.184 4.184 22 H 0.111 0.889 23 H 0.107 0.893 24 H 0.101 0.899 25 H 0.189 0.811 26 H 0.126 0.874 27 H 0.162 0.838 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.216 8.495 0.906 13.317 hybrid contribution -0.042 2.327 0.999 2.533 sum -10.257 10.822 1.905 15.032 Atomic orbital electron populations 1.20970 0.87111 1.04588 1.04134 1.20092 0.98561 0.90452 0.96198 1.21163 0.89940 1.00874 1.04923 1.17579 0.90952 0.79309 1.05453 1.91467 1.80618 1.45406 1.94117 1.21082 0.85223 0.94424 1.12133 1.98326 1.09864 1.98638 1.97118 1.21016 0.95004 0.95664 0.94747 1.18156 0.92915 0.84112 0.91892 0.95781 1.59370 1.34148 1.39534 1.04540 1.21790 1.37662 1.08059 0.96918 0.94328 1.26831 0.92515 0.95623 1.06251 1.70656 1.37202 1.41289 1.06181 0.83114 0.77297 0.75263 0.71608 1.21455 1.19196 1.20887 1.19843 0.91484 0.97056 1.00460 1.21222 1.00509 0.93823 1.02858 0.88935 0.89315 0.89910 0.81060 0.87433 0.83776 0.90832 0.90395 0.88802 0.90564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.91 9.59 71.24 0.68 -1.22 16 2 C -0.05 -1.42 5.88 -19.87 -0.12 -1.53 16 3 C -0.15 -4.11 9.68 22.31 0.22 -3.89 16 4 C 0.09 3.00 7.28 22.39 0.16 3.16 16 5 F -0.14 -4.65 16.84 44.97 0.76 -3.90 16 6 C -0.10 -4.05 6.32 22.36 0.14 -3.91 16 7 Cl -0.07 -2.83 26.71 -2.72 -0.07 -2.91 16 8 C -0.06 -2.53 4.75 -19.85 -0.09 -2.63 16 9 C 0.24 11.55 2.23 43.42 0.10 11.65 16 10 H 0.02 1.33 6.14 -2.38 -0.01 1.31 16 11 N -0.84 -37.40 7.49 -174.95 -1.31 -38.71 16 12 C -0.61 -32.34 6.69 25.60 0.17 -32.17 16 13 H 0.04 2.09 7.74 -2.91 -0.02 2.06 16 14 C -0.01 -0.44 5.39 84.66 0.46 0.02 16 15 N -0.92 -54.86 13.50 21.45 0.29 -54.57 16 16 Si 1.10 49.44 29.90 68.60 2.05 51.49 16 17 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 18 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 19 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 20 C -0.09 -2.97 5.76 -19.86 -0.11 -3.09 16 21 C -0.13 -3.90 7.66 71.24 0.55 -3.36 16 22 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.09 1.16 8.09 -2.38 -0.02 1.14 16 24 H 0.08 1.34 5.89 -2.39 -0.01 1.33 16 25 H 0.17 3.37 8.06 -2.91 -0.02 3.34 16 26 H 0.31 12.45 8.90 -89.70 -0.80 11.65 16 27 H 0.34 14.34 4.86 -89.69 -0.44 13.91 16 28 H 0.28 17.04 6.40 -92.71 -0.59 16.45 16 29 H 0.08 2.14 7.27 -2.39 -0.02 2.13 16 30 H 0.09 2.21 5.74 -2.39 -0.01 2.19 16 31 H 0.08 2.93 4.80 -2.39 -0.01 2.92 16 Total: -1.00 -64.03 269.02 4.00 -60.03 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: 0.14 Total: 25.53 kcal Atomic # 6 Polarization: -39.11 SS G_CDS: 2.15 Total: -36.96 kcal Atomic # 7 Polarization: -92.26 SS G_CDS: -1.02 Total: -93.28 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 0.76 Total: -3.90 kcal Atomic # 14 Polarization: 49.44 SS G_CDS: 2.05 Total: 51.49 kcal Atomic # 17 Polarization: -2.83 SS G_CDS: -0.07 Total: -2.91 kcal Total: -64.03 4.00 -60.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259989447.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.945 kcal (2) G-P(sol) polarization free energy of solvation -64.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds