Wall clock time and date at job start Mon Mar 30 2020 06:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.47346 * 305.00026 * 10 9 7 12 12 N 1.46905 * 109.47150 * 64.99640 * 10 9 7 13 13 C 1.50699 * 109.47337 * 184.99952 * 10 9 7 14 14 C 1.38278 * 119.98674 * 264.72750 * 13 10 9 15 15 C 1.38212 * 120.14790 * 179.72722 * 14 13 10 16 16 C 1.38373 * 120.13525 * 0.54340 * 15 14 13 17 17 Cl 1.73604 * 120.01118 * 179.70527 * 16 15 14 18 18 C 1.38624 * 119.98153 * 359.73155 * 16 15 14 19 19 O 1.36022 * 120.08051 * 179.97438 * 18 16 15 20 20 C 1.38550 * 119.98971 * 84.99958 * 13 10 9 21 21 O 1.35995 * 120.06812 * 359.97438 * 20 13 10 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.00898 * 110.99705 * 60.00524 * 12 10 9 26 26 H 1.00897 * 110.99904 * 183.95433 * 12 10 9 27 27 H 1.07992 * 119.92703 * 359.97438 * 14 13 10 28 28 H 1.08002 * 119.93174 * 180.27925 * 15 14 13 29 29 H 0.96694 * 113.99738 * 270.02185 * 19 18 16 30 30 H 0.96695 * 114.00193 * 89.99671 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9293 -3.5553 -0.8413 12 7 3.0083 -3.6539 1.2558 13 6 1.4957 -4.9637 -0.1233 14 6 1.1682 -5.6832 1.0112 15 6 0.4760 -6.8745 0.9019 16 6 0.1176 -7.3579 -0.3442 17 17 -0.7451 -8.8584 -0.4782 18 6 0.4480 -6.6439 -1.4855 19 8 0.0971 -7.1174 -2.7114 20 6 1.1400 -5.4417 -1.3741 21 8 1.4660 -4.7373 -2.4908 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 2.3960 -3.7518 2.0518 26 1 3.7159 -4.3732 1.2534 27 1 1.4504 -5.3116 1.9851 28 1 0.2181 -7.4315 1.7906 29 1 0.7621 -7.6907 -3.1166 30 1 2.3268 -4.9696 -2.8650 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260003103.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:09 Heat of formation + Delta-G solvation = -69.540245 kcal Electronic energy + Delta-G solvation = -16841.195475 eV Core-core repulsion = 13855.600847 eV Total energy + Delta-G solvation = -2985.594628 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.33394 -37.42795 -36.94267 -36.16728 -34.85424 -32.41019 -29.57419 -29.16398 -28.23202 -24.57933 -22.59227 -22.30610 -20.03426 -18.65208 -17.65937 -16.68567 -16.24318 -16.18441 -15.13639 -14.84841 -14.45106 -14.33681 -14.04891 -13.30985 -12.92120 -12.57683 -12.22531 -12.05878 -11.47498 -11.41146 -11.11431 -10.95763 -10.78239 -10.53646 -10.27683 -10.25359 -9.61129 -9.08168 -8.61917 -8.32240 -8.26223 -8.08580 -5.89129 -3.88429 1.06053 1.12196 2.05836 3.39436 3.43315 3.45521 3.50307 3.96460 4.25986 4.55502 4.89989 5.02806 5.15601 5.32088 5.48706 5.53783 5.70654 5.99262 6.08821 6.16309 6.43447 6.55936 6.80958 7.38735 7.54410 7.68055 7.84823 7.93774 8.04652 8.11483 8.52074 9.17069 9.73199 11.22690 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.036174 B = 0.005094 C = 0.004901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.846159 B = 5495.583343 C = 5712.212667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.051 3.949 3 Si 0.893 3.107 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.494 4.494 8 H 0.062 0.938 9 C 0.040 3.960 10 C 0.138 3.862 11 H 0.083 0.917 12 N -0.821 5.821 13 C -0.102 4.102 14 C -0.110 4.110 15 C -0.102 4.102 16 C -0.063 4.063 17 Cl -0.066 7.066 18 C 0.088 3.912 19 O -0.476 6.476 20 C 0.101 3.899 21 O -0.468 6.468 22 H 0.258 0.742 23 H 0.014 0.986 24 H 0.026 0.974 25 H 0.335 0.665 26 H 0.322 0.678 27 H 0.136 0.864 28 H 0.136 0.864 29 H 0.384 0.616 30 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.867 -17.463 -0.642 17.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.149 4.149 3 Si 0.721 3.279 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.533 4.533 8 H 0.080 0.920 9 C 0.003 3.997 10 C 0.026 3.974 11 H 0.101 0.899 12 N -0.349 5.349 13 C -0.105 4.105 14 C -0.129 4.129 15 C -0.121 4.121 16 C -0.091 4.091 17 Cl -0.037 7.037 18 C 0.042 3.958 19 O -0.285 6.285 20 C 0.054 3.946 21 O -0.277 6.277 22 H 0.068 0.932 23 H 0.033 0.967 24 H 0.045 0.955 25 H 0.150 0.850 26 H 0.133 0.867 27 H 0.153 0.847 28 H 0.153 0.847 29 H 0.239 0.761 30 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 2.809 -16.116 -0.680 16.373 hybrid contribution 0.635 -0.714 -0.095 0.960 sum 3.444 -16.830 -0.774 17.196 Atomic orbital electron populations 1.69977 1.06039 1.26380 1.51738 1.25020 0.94791 0.99178 0.95897 0.86583 0.79845 0.83587 0.77878 1.20926 1.21523 1.19869 1.21106 0.93260 0.89956 1.48932 0.91991 1.19121 0.92736 0.90291 0.97566 1.20763 0.94890 0.89511 0.92205 0.89862 1.58826 1.17803 1.54234 1.04040 1.21902 0.98083 0.98735 0.91806 1.20894 0.99055 0.94123 0.98820 1.20924 0.98803 0.96792 0.95553 1.21114 1.02962 0.90466 0.94516 1.98348 1.75565 1.31374 1.98444 1.18523 0.99909 0.92766 0.84652 1.84964 1.45960 1.68418 1.29148 1.18412 0.98590 0.90480 0.87130 1.85051 1.40516 1.61888 1.40237 0.93216 0.96726 0.95537 0.85032 0.86653 0.84669 0.84656 0.76102 0.76162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.61 13.29 55.43 0.74 -26.88 16 2 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 3 Si 0.89 22.11 29.54 -169.99 -5.02 17.08 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.49 -13.88 8.84 -34.44 -0.30 -14.18 16 8 H 0.06 1.72 7.74 -52.49 -0.41 1.31 16 9 C 0.04 1.02 4.60 -27.88 -0.13 0.90 16 10 C 0.14 2.65 2.65 -68.86 -0.18 2.47 16 11 H 0.08 1.61 7.69 -51.93 -0.40 1.21 16 12 N -0.82 -13.96 8.54 -5.65 -0.05 -14.01 16 13 C -0.10 -1.69 5.06 -104.49 -0.53 -2.22 16 14 C -0.11 -1.56 9.26 -39.58 -0.37 -1.93 16 15 C -0.10 -1.32 9.82 -39.54 -0.39 -1.71 16 16 C -0.06 -0.87 6.33 -39.39 -0.25 -1.12 16 17 Cl -0.07 -0.81 28.50 -51.86 -1.48 -2.29 16 18 C 0.09 1.30 6.71 -39.10 -0.26 1.04 16 19 O -0.48 -6.34 12.75 -34.31 -0.44 -6.78 16 20 C 0.10 1.62 6.69 -39.13 -0.26 1.36 16 21 O -0.47 -7.52 12.42 -34.23 -0.43 -7.94 16 22 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 23 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.34 5.40 7.21 -39.29 -0.28 5.12 16 26 H 0.32 4.40 9.06 -39.29 -0.36 4.04 16 27 H 0.14 1.68 6.28 -52.49 -0.33 1.35 16 28 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 29 H 0.38 3.07 9.06 45.56 0.41 3.48 16 30 H 0.38 3.95 9.06 45.56 0.41 4.36 16 LS Contribution 280.53 15.07 4.23 4.23 Total: -1.00 -34.16 280.53 -6.57 -40.73 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -1.35 Total: 9.87 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -2.77 Total: -14.01 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.69 Total: -40.88 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.86 Total: -14.72 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.48 Total: -2.29 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -34.16 -6.57 -40.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260003103.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.815 kcal (2) G-P(sol) polarization free energy of solvation -34.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds