Wall clock time and date at job start Mon Mar 30 2020 06:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.47346 * 305.00026 * 10 9 7 12 12 N 1.46905 * 109.47150 * 64.99640 * 10 9 7 13 13 C 1.50699 * 109.47337 * 184.99952 * 10 9 7 14 14 C 1.38278 * 119.98674 * 264.72750 * 13 10 9 15 15 C 1.38212 * 120.14790 * 179.72722 * 14 13 10 16 16 C 1.38373 * 120.13525 * 0.54340 * 15 14 13 17 17 Cl 1.73604 * 120.01118 * 179.70527 * 16 15 14 18 18 C 1.38624 * 119.98153 * 359.73155 * 16 15 14 19 19 O 1.36022 * 120.08051 * 179.97438 * 18 16 15 20 20 C 1.38550 * 119.98971 * 84.99958 * 13 10 9 21 21 O 1.35995 * 120.06812 * 359.97438 * 20 13 10 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.00898 * 110.99705 * 60.00524 * 12 10 9 26 26 H 1.00897 * 110.99904 * 183.95433 * 12 10 9 27 27 H 1.07992 * 119.92703 * 359.97438 * 14 13 10 28 28 H 1.08002 * 119.93174 * 180.27925 * 15 14 13 29 29 H 0.96694 * 113.99738 * 270.02185 * 19 18 16 30 30 H 0.96695 * 114.00193 * 89.99671 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 1 2.9293 -3.5553 -0.8413 12 7 3.0083 -3.6539 1.2558 13 6 1.4957 -4.9637 -0.1233 14 6 1.1682 -5.6832 1.0112 15 6 0.4760 -6.8745 0.9019 16 6 0.1176 -7.3579 -0.3442 17 17 -0.7451 -8.8584 -0.4782 18 6 0.4480 -6.6439 -1.4855 19 8 0.0971 -7.1174 -2.7114 20 6 1.1400 -5.4417 -1.3741 21 8 1.4660 -4.7373 -2.4908 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 2.3960 -3.7518 2.0518 26 1 3.7159 -4.3732 1.2534 27 1 1.4504 -5.3116 1.9851 28 1 0.2181 -7.4315 1.7906 29 1 0.7621 -7.6907 -3.1166 30 1 2.3268 -4.9696 -2.8650 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260003103.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:09 Heat of formation + Delta-G solvation = -97.312698 kcal Electronic energy + Delta-G solvation = -16842.399779 eV Core-core repulsion = 13855.600847 eV Total energy + Delta-G solvation = -2986.798932 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.48381 -38.60345 -38.06221 -37.28102 -36.28710 -34.46082 -30.79622 -30.41469 -30.01041 -26.32231 -23.92988 -23.70484 -21.50031 -19.83956 -18.79472 -18.43878 -17.73007 -17.33232 -16.73635 -16.22883 -16.01451 -15.65537 -15.26618 -14.73292 -14.31159 -13.91859 -13.63583 -13.54310 -13.16559 -12.77969 -12.63960 -12.50984 -12.31522 -12.08860 -11.98201 -11.47388 -11.38104 -11.17943 -10.51000 -9.70825 -9.58173 -9.41950 -8.10634 -6.17502 -0.07082 0.02498 1.00454 1.43556 1.44763 1.56445 2.32542 2.48623 2.93012 3.19935 3.23009 3.78117 3.83113 3.94650 4.16220 4.39755 4.58591 4.67152 4.92901 4.93729 5.02823 5.28077 5.49046 5.52566 5.69579 5.87531 6.29249 6.47276 6.54890 6.83592 6.87565 6.97353 7.49319 9.01593 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.036174 B = 0.005094 C = 0.004901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.846159 B = 5495.583343 C = 5712.212667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.008 4.008 3 Si 0.963 3.037 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.503 4.503 8 H 0.064 0.936 9 C 0.049 3.951 10 C 0.156 3.844 11 H 0.078 0.922 12 N -0.828 5.828 13 C -0.124 4.124 14 C -0.107 4.107 15 C -0.095 4.095 16 C -0.065 4.065 17 Cl -0.050 7.050 18 C 0.085 3.915 19 O -0.487 6.487 20 C 0.087 3.913 21 O -0.492 6.492 22 H 0.259 0.741 23 H -0.013 1.013 24 H -0.015 1.015 25 H 0.341 0.659 26 H 0.345 0.655 27 H 0.152 0.848 28 H 0.166 0.834 29 H 0.406 0.594 30 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.858 -18.527 -0.059 19.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.204 4.204 3 Si 0.788 3.212 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.542 4.542 8 H 0.082 0.918 9 C 0.011 3.989 10 C 0.044 3.956 11 H 0.096 0.904 12 N -0.358 5.358 13 C -0.127 4.127 14 C -0.126 4.126 15 C -0.114 4.114 16 C -0.093 4.093 17 Cl -0.021 7.021 18 C 0.039 3.961 19 O -0.299 6.299 20 C 0.041 3.959 21 O -0.304 6.304 22 H 0.067 0.933 23 H 0.006 0.994 24 H 0.004 0.996 25 H 0.156 0.844 26 H 0.159 0.841 27 H 0.170 0.830 28 H 0.183 0.817 29 H 0.265 0.735 30 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 3.847 -17.220 -0.108 17.645 hybrid contribution 0.298 -0.503 -0.323 0.668 sum 4.145 -17.723 -0.432 18.207 Atomic orbital electron populations 1.70126 1.07840 1.27285 1.53151 1.25949 0.95623 1.03225 0.95623 0.85476 0.78732 0.78819 0.78145 1.20227 1.21293 1.18636 1.21489 0.93501 0.91222 1.47939 0.91757 1.18878 0.93186 0.92573 0.94214 1.20151 0.93616 0.88711 0.93115 0.90417 1.58670 1.18240 1.55683 1.03233 1.21654 0.99699 0.98294 0.93064 1.21085 0.98587 0.94227 0.98684 1.21221 0.97555 0.96243 0.96346 1.21277 1.02503 0.90944 0.94537 1.98355 1.75139 1.30220 1.98434 1.18514 0.99588 0.92537 0.85507 1.84899 1.47153 1.69003 1.28834 1.18584 0.99261 0.91116 0.86969 1.84980 1.42279 1.62606 1.40520 0.93253 0.99423 0.99624 0.84426 0.84108 0.83048 0.81682 0.73491 0.73780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.16 13.29 21.45 0.28 -58.88 16 2 C -0.01 -0.48 5.46 84.66 0.46 -0.02 16 3 Si 0.96 45.59 29.54 68.60 2.03 47.62 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.50 -28.69 8.84 25.60 0.23 -28.46 16 8 H 0.06 3.56 7.74 -2.91 -0.02 3.54 16 9 C 0.05 2.58 4.60 29.85 0.14 2.72 16 10 C 0.16 6.03 2.65 44.17 0.12 6.15 16 11 H 0.08 3.04 7.69 -2.39 -0.02 3.02 16 12 N -0.83 -27.32 8.54 -171.79 -1.47 -28.79 16 13 C -0.12 -4.06 5.06 -19.78 -0.10 -4.16 16 14 C -0.11 -2.87 9.26 22.27 0.21 -2.66 16 15 C -0.10 -2.23 9.82 22.30 0.22 -2.01 16 16 C -0.07 -1.67 6.33 22.39 0.14 -1.53 16 17 Cl -0.05 -1.12 28.50 -2.72 -0.08 -1.20 16 18 C 0.09 2.42 6.71 22.58 0.15 2.57 16 19 O -0.49 -12.34 12.75 -79.93 -1.02 -13.36 16 20 C 0.09 2.80 6.69 22.56 0.15 2.95 16 21 O -0.49 -16.04 12.42 -79.63 -0.99 -17.03 16 22 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 23 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 24 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 25 H 0.34 10.62 7.21 -89.70 -0.65 9.98 16 26 H 0.35 8.78 9.06 -89.70 -0.81 7.97 16 27 H 0.15 3.45 6.28 -2.91 -0.02 3.44 16 28 H 0.17 2.85 8.06 -2.91 -0.02 2.82 16 29 H 0.41 5.83 9.06 -74.06 -0.67 5.16 16 30 H 0.40 8.38 9.06 -74.06 -0.67 7.71 16 Total: -1.00 -74.20 280.53 -1.10 -75.30 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: -1.57 Total: 20.78 kcal Atomic # 6 Polarization: -26.16 SS G_CDS: 1.71 Total: -24.45 kcal Atomic # 7 Polarization: -86.48 SS G_CDS: -1.18 Total: -87.67 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -2.01 Total: -30.39 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.08 Total: -1.20 kcal Total: -74.20 -1.10 -75.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260003103.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.012 kcal (2) G-P(sol) polarization free energy of solvation -74.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds