Wall clock time and date at job start Mon Mar 30 2020 07:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.53002 * 109.47153 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.46976 * 54.99550 * 10 9 7 12 12 N 1.46900 * 109.46648 * 294.99361 * 10 9 7 13 13 C 1.50696 * 109.46626 * 174.99629 * 10 9 7 14 14 C 1.38235 * 120.00580 * 99.72667 * 13 10 9 15 15 C 1.38229 * 120.01310 * 179.76518 * 14 13 10 16 16 C 1.38258 * 120.02554 * 0.50392 * 15 14 13 17 17 C 1.50697 * 119.99529 * 179.76722 * 16 15 14 18 18 F 1.39906 * 109.47111 * 269.98029 * 17 16 15 19 19 C 1.38193 * 120.01149 * 359.74692 * 16 15 14 20 20 C 1.38332 * 120.01080 * 279.99370 * 13 10 9 21 21 Cl 1.73599 * 120.00816 * 359.96043 * 20 13 10 22 22 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 24 24 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 25 25 H 1.00907 * 110.99730 * 176.04632 * 12 10 9 26 26 H 1.00901 * 111.00161 * 300.00008 * 12 10 9 27 27 H 1.08006 * 119.99500 * 359.97438 * 14 13 10 28 28 H 1.08005 * 119.98424 * 180.22668 * 15 14 13 29 29 H 1.08997 * 109.46916 * 29.97470 * 17 16 15 30 30 H 1.08999 * 109.47263 * 149.97671 * 17 16 15 31 31 H 1.07999 * 120.00432 * 180.02562 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2453 -3.6621 -0.0121 11 1 2.9326 -3.5570 0.8273 12 7 3.0036 -3.6511 -1.2703 13 6 1.4964 -4.9639 0.1117 14 6 1.2452 -5.7266 -1.0135 15 6 0.5624 -6.9231 -0.8995 16 6 0.1213 -7.3526 0.3385 17 6 -0.6275 -8.6546 0.4613 18 9 -1.9989 -8.4194 0.3150 19 6 0.3673 -6.5885 1.4633 20 6 1.0553 -5.3932 1.3505 21 17 1.3653 -4.4330 2.7631 22 1 -0.4850 -0.8400 0.0004 23 1 0.6281 -2.5591 0.8866 24 1 0.6207 -2.5548 -0.8933 25 1 3.7114 -4.3703 -1.2722 26 1 2.3883 -3.7472 -2.0642 27 1 1.5853 -5.3892 -1.9815 28 1 0.3696 -7.5204 -1.7784 29 1 -0.2919 -9.3414 -0.3157 30 1 -0.4364 -9.0927 1.4409 31 1 0.0231 -6.9243 2.4303 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260012108.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:24 Heat of formation + Delta-G solvation = -46.682180 kcal Electronic energy + Delta-G solvation = -16581.647977 eV Core-core repulsion = 13609.417339 eV Total energy + Delta-G solvation = -2972.230638 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.068 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -47.77971 -39.66718 -36.23692 -35.83868 -32.82217 -31.20143 -30.78351 -28.17614 -26.49476 -23.66907 -22.69528 -21.79556 -19.99161 -17.14790 -16.68497 -16.44174 -16.05737 -15.44335 -15.30857 -14.80258 -14.56649 -13.79106 -13.64721 -13.36880 -13.14347 -12.89097 -11.89220 -11.60525 -11.51770 -11.34166 -11.25592 -11.13335 -10.82637 -10.47258 -10.36525 -10.08802 -9.97341 -8.89548 -8.62900 -8.36424 -8.22155 -8.08674 -6.21797 -3.87889 1.12436 1.20380 2.36079 3.51550 3.54421 3.56262 3.72085 4.30383 4.51701 4.65123 4.68100 4.84960 4.94718 5.10514 5.21161 5.39604 5.44233 5.55836 5.68423 5.77019 6.06186 6.15343 6.27449 6.34092 6.65049 6.77237 7.28652 7.42318 7.80491 8.00606 8.34608 8.66174 9.02456 9.80962 11.18393 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.029310 B = 0.005483 C = 0.005294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.083477 B = 5105.531779 C = 5287.931602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.009 3.991 3 Si 1.071 2.929 4 H -0.291 1.291 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.572 4.572 8 H 0.056 0.944 9 C 0.026 3.974 10 C 0.135 3.865 11 H 0.090 0.910 12 N -0.819 5.819 13 C -0.080 4.080 14 C -0.121 4.121 15 C -0.090 4.090 16 C -0.145 4.145 17 C 0.112 3.888 18 F -0.212 7.212 19 C -0.088 4.088 20 C -0.034 4.034 21 Cl -0.054 7.054 22 H 0.266 0.734 23 H 0.019 0.981 24 H 0.004 0.996 25 H 0.324 0.676 26 H 0.334 0.666 27 H 0.131 0.869 28 H 0.127 0.873 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.042 -17.728 0.774 17.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.193 4.193 3 Si 0.900 3.100 4 H -0.217 1.217 5 H -0.215 1.215 6 H -0.213 1.213 7 C -0.611 4.611 8 H 0.074 0.926 9 C -0.011 4.011 10 C 0.024 3.976 11 H 0.108 0.892 12 N -0.347 5.347 13 C -0.083 4.083 14 C -0.139 4.139 15 C -0.108 4.108 16 C -0.146 4.146 17 C 0.058 3.942 18 F -0.193 7.193 19 C -0.106 4.106 20 C -0.062 4.062 21 Cl -0.024 7.024 22 H 0.076 0.924 23 H 0.037 0.963 24 H 0.022 0.978 25 H 0.136 0.864 26 H 0.149 0.851 27 H 0.148 0.852 28 H 0.145 0.855 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.086 -15.223 1.093 15.404 hybrid contribution -0.314 -2.598 -0.025 2.617 sum 1.772 -17.821 1.068 17.940 Atomic orbital electron populations 1.70757 1.06912 1.30326 1.47852 1.25788 0.96542 1.02606 0.94381 0.83512 0.74727 0.75217 0.76511 1.21750 1.21464 1.21305 1.21918 0.94600 0.90862 1.53723 0.92587 1.19249 0.93388 0.92171 0.96328 1.20791 0.94958 0.89155 0.92745 0.89222 1.58763 1.17724 1.54382 1.03793 1.21503 0.96958 0.98547 0.91308 1.20975 1.00096 0.94566 0.98280 1.21030 0.96921 0.96311 0.96580 1.20018 1.02679 0.98099 0.93811 1.20723 0.75640 0.94182 1.03686 1.92824 1.33000 1.95989 1.97441 1.20888 0.97675 0.93150 0.98929 1.20775 1.02539 0.93823 0.89013 1.98391 1.94283 1.71068 1.38708 0.92392 0.96297 0.97775 0.86430 0.85142 0.85165 0.85527 0.89864 0.89942 0.85051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.81 13.65 55.43 0.76 -28.05 16 2 C 0.01 0.27 5.46 -17.82 -0.10 0.17 16 3 Si 1.07 26.17 29.90 -169.99 -5.08 21.09 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.57 -16.33 8.84 -34.44 -0.30 -16.64 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.03 0.65 3.86 -27.88 -0.11 0.55 16 10 C 0.14 2.73 2.38 -68.87 -0.16 2.57 16 11 H 0.09 1.90 7.35 -51.93 -0.38 1.52 16 12 N -0.82 -14.82 8.43 -5.66 -0.05 -14.86 16 13 C -0.08 -1.38 5.08 -104.59 -0.53 -1.91 16 14 C -0.12 -1.75 9.25 -39.59 -0.37 -2.12 16 15 C -0.09 -1.13 9.70 -39.58 -0.38 -1.51 16 16 C -0.15 -1.80 5.60 -104.63 -0.59 -2.39 16 17 C 0.11 1.06 7.67 36.00 0.28 1.34 16 18 F -0.21 -2.67 17.34 2.25 0.04 -2.63 16 19 C -0.09 -1.22 9.49 -39.55 -0.38 -1.59 16 20 C -0.03 -0.57 6.31 -39.50 -0.25 -0.82 16 21 Cl -0.05 -0.93 26.65 -51.86 -1.38 -2.31 16 22 H 0.27 8.33 7.22 -40.82 -0.29 8.04 16 23 H 0.02 0.51 7.17 -51.93 -0.37 0.14 16 24 H 0.00 0.11 8.00 -51.93 -0.42 -0.31 16 25 H 0.32 4.83 9.06 -39.29 -0.36 4.47 16 26 H 0.33 5.69 7.28 -39.29 -0.29 5.40 16 27 H 0.13 1.68 6.25 -52.48 -0.33 1.36 16 28 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 29 H 0.08 0.57 8.08 -51.93 -0.42 0.15 16 30 H 0.08 0.60 8.09 -51.93 -0.42 0.18 16 31 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 283.30 15.07 4.27 4.27 Total: -1.00 -32.49 283.30 -7.66 -40.14 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -3.32 Total: 4.70 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: -2.89 Total: -22.34 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.71 Total: -42.91 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.04 Total: -2.63 kcal Atomic # 14 Polarization: 26.17 SS G_CDS: -5.08 Total: 21.09 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -1.38 Total: -2.31 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -32.49 -7.66 -40.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260012108.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.538 kcal (2) G-P(sol) polarization free energy of solvation -32.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds