Wall clock time and date at job start Mon Mar 30 2020 07:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.53002 * 109.47153 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.46976 * 54.99550 * 10 9 7 12 12 N 1.46900 * 109.46648 * 294.99361 * 10 9 7 13 13 C 1.50696 * 109.46626 * 174.99629 * 10 9 7 14 14 C 1.38235 * 120.00580 * 99.72667 * 13 10 9 15 15 C 1.38229 * 120.01310 * 179.76518 * 14 13 10 16 16 C 1.38258 * 120.02554 * 0.50392 * 15 14 13 17 17 C 1.50697 * 119.99529 * 179.76722 * 16 15 14 18 18 F 1.39906 * 109.47111 * 269.98029 * 17 16 15 19 19 C 1.38193 * 120.01149 * 359.74692 * 16 15 14 20 20 C 1.38332 * 120.01080 * 279.99370 * 13 10 9 21 21 Cl 1.73599 * 120.00816 * 359.96043 * 20 13 10 22 22 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 24 24 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 25 25 H 1.00907 * 110.99730 * 176.04632 * 12 10 9 26 26 H 1.00901 * 111.00161 * 300.00008 * 12 10 9 27 27 H 1.08006 * 119.99500 * 359.97438 * 14 13 10 28 28 H 1.08005 * 119.98424 * 180.22668 * 15 14 13 29 29 H 1.08997 * 109.46916 * 29.97470 * 17 16 15 30 30 H 1.08999 * 109.47263 * 149.97671 * 17 16 15 31 31 H 1.07999 * 120.00432 * 180.02562 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2453 -3.6621 -0.0121 11 1 2.9326 -3.5570 0.8273 12 7 3.0036 -3.6511 -1.2703 13 6 1.4964 -4.9639 0.1117 14 6 1.2452 -5.7266 -1.0135 15 6 0.5624 -6.9231 -0.8995 16 6 0.1213 -7.3526 0.3385 17 6 -0.6275 -8.6546 0.4613 18 9 -1.9989 -8.4194 0.3150 19 6 0.3673 -6.5885 1.4633 20 6 1.0553 -5.3932 1.3505 21 17 1.3653 -4.4330 2.7631 22 1 -0.4850 -0.8400 0.0004 23 1 0.6281 -2.5591 0.8866 24 1 0.6207 -2.5548 -0.8933 25 1 3.7114 -4.3703 -1.2722 26 1 2.3883 -3.7472 -2.0642 27 1 1.5853 -5.3892 -1.9815 28 1 0.3696 -7.5204 -1.7784 29 1 -0.2919 -9.3414 -0.3157 30 1 -0.4364 -9.0927 1.4409 31 1 0.0231 -6.9243 2.4303 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260012108.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:24 Heat of formation + Delta-G solvation = -67.516762 kcal Electronic energy + Delta-G solvation = -16582.551432 eV Core-core repulsion = 13609.417339 eV Total energy + Delta-G solvation = -2973.134094 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.62998 -40.84916 -37.50434 -37.36933 -34.88339 -32.38122 -31.92403 -29.99188 -27.72088 -25.46375 -23.90647 -23.24336 -21.41000 -18.96024 -18.06092 -17.54601 -16.89956 -16.71332 -16.59312 -15.98599 -15.68131 -15.60659 -14.96392 -14.88379 -14.64356 -14.28458 -13.65140 -13.22764 -12.98666 -12.61120 -12.51392 -12.41056 -12.18067 -11.98844 -11.92338 -11.82501 -11.69972 -10.71698 -10.47953 -9.99728 -9.70277 -9.57538 -8.57739 -6.23851 -0.01518 0.10041 1.12003 1.53770 1.63436 1.81242 2.41833 2.61962 3.24926 3.37435 3.61974 3.72868 3.78218 3.97528 4.05066 4.15421 4.29493 4.42667 4.54718 4.68353 4.72674 4.82750 5.02860 5.16637 5.21892 5.26703 5.49147 5.67608 6.07849 6.29695 6.34361 6.65141 6.74086 7.53689 8.82672 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.029310 B = 0.005483 C = 0.005294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.083477 B = 5105.531779 C = 5287.931602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.046 4.046 3 Si 1.118 2.882 4 H -0.276 1.276 5 H -0.270 1.270 6 H -0.286 1.286 7 C -0.578 4.578 8 H 0.051 0.949 9 C 0.033 3.967 10 C 0.151 3.849 11 H 0.073 0.927 12 N -0.827 5.827 13 C -0.107 4.107 14 C -0.123 4.123 15 C -0.084 4.084 16 C -0.138 4.138 17 C 0.109 3.891 18 F -0.230 7.230 19 C -0.092 4.092 20 C -0.053 4.053 21 Cl -0.074 7.074 22 H 0.251 0.749 23 H -0.002 1.002 24 H -0.019 1.019 25 H 0.345 0.655 26 H 0.341 0.659 27 H 0.144 0.856 28 H 0.164 0.836 29 H 0.118 0.882 30 H 0.108 0.892 31 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.561 -19.636 0.022 19.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.241 4.241 3 Si 0.940 3.060 4 H -0.202 1.202 5 H -0.195 1.195 6 H -0.211 1.211 7 C -0.616 4.616 8 H 0.069 0.931 9 C -0.004 4.004 10 C 0.039 3.961 11 H 0.091 0.909 12 N -0.358 5.358 13 C -0.110 4.110 14 C -0.142 4.142 15 C -0.102 4.102 16 C -0.138 4.138 17 C 0.055 3.945 18 F -0.211 7.211 19 C -0.111 4.111 20 C -0.080 4.080 21 Cl -0.045 7.045 22 H 0.060 0.940 23 H 0.016 0.984 24 H -0.001 1.001 25 H 0.158 0.842 26 H 0.156 0.844 27 H 0.161 0.839 28 H 0.182 0.818 29 H 0.136 0.864 30 H 0.126 0.874 31 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.621 -17.169 0.342 17.371 hybrid contribution -0.491 -2.136 0.182 2.199 sum 2.130 -19.305 0.524 19.430 Atomic orbital electron populations 1.70898 1.07960 1.29430 1.50320 1.27280 0.96589 1.06625 0.93627 0.82918 0.74219 0.71396 0.77452 1.20233 1.19538 1.21146 1.22257 0.94516 0.92384 1.52434 0.93116 1.19057 0.93778 0.93589 0.94022 1.20213 0.93729 0.89061 0.93105 0.90923 1.58626 1.18241 1.55754 1.03167 1.21224 0.98891 0.98123 0.92806 1.21192 1.00059 0.95093 0.97812 1.21468 0.95180 0.95497 0.98037 1.20480 1.01392 0.98861 0.93110 1.21043 0.73992 0.92839 1.06644 1.92792 1.34574 1.96055 1.97654 1.21182 0.96987 0.92248 1.00658 1.20993 1.03945 0.94863 0.88229 1.98374 1.94529 1.71895 1.39740 0.93986 0.98414 1.00125 0.84159 0.84445 0.83888 0.81848 0.86394 0.87438 0.83235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.74 13.65 21.45 0.29 -60.45 16 2 C -0.05 -2.72 5.46 84.65 0.46 -2.26 16 3 Si 1.12 52.75 29.90 68.60 2.05 54.80 16 4 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 6 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 7 C -0.58 -33.64 8.84 25.60 0.23 -33.42 16 8 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 9 C 0.03 1.73 3.86 29.85 0.12 1.84 16 10 C 0.15 6.21 2.38 44.17 0.10 6.31 16 11 H 0.07 3.18 7.35 -2.39 -0.02 3.16 16 12 N -0.83 -29.67 8.43 -171.81 -1.45 -31.12 16 13 C -0.11 -3.68 5.08 -19.84 -0.10 -3.78 16 14 C -0.12 -3.36 9.25 22.27 0.21 -3.15 16 15 C -0.08 -1.81 9.70 22.27 0.22 -1.59 16 16 C -0.14 -2.98 5.60 -19.87 -0.11 -3.09 16 17 C 0.11 1.60 7.67 71.23 0.55 2.14 16 18 F -0.23 -5.07 17.34 44.97 0.78 -4.29 16 19 C -0.09 -2.40 9.49 22.29 0.21 -2.19 16 20 C -0.05 -1.76 6.31 22.32 0.14 -1.62 16 21 Cl -0.07 -2.65 26.65 -2.72 -0.07 -2.72 16 22 H 0.25 16.39 7.22 -92.71 -0.67 15.72 16 23 H 0.00 -0.13 7.17 -2.39 -0.02 -0.15 16 24 H -0.02 -1.11 8.00 -2.39 -0.02 -1.12 16 25 H 0.34 9.90 9.06 -89.69 -0.81 9.09 16 26 H 0.34 11.41 7.28 -89.69 -0.65 10.76 16 27 H 0.14 3.42 6.25 -2.91 -0.02 3.40 16 28 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 29 H 0.12 0.98 8.08 -2.39 -0.02 0.96 16 30 H 0.11 1.08 8.09 -2.39 -0.02 1.06 16 31 H 0.15 3.25 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -72.12 283.30 3.43 -68.70 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -0.19 Total: 15.90 kcal Atomic # 6 Polarization: -42.82 SS G_CDS: 2.02 Total: -40.81 kcal Atomic # 7 Polarization: -90.41 SS G_CDS: -1.16 Total: -91.57 kcal Atomic # 9 Polarization: -5.07 SS G_CDS: 0.78 Total: -4.29 kcal Atomic # 14 Polarization: 52.75 SS G_CDS: 2.05 Total: 54.80 kcal Atomic # 17 Polarization: -2.65 SS G_CDS: -0.07 Total: -2.72 kcal Total: -72.12 3.43 -68.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260012108.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.181 kcal (2) G-P(sol) polarization free energy of solvation -72.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds