Wall clock time and date at job start Mon Mar 30 2020 07:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99970 * 2 1 4 4 H 1.48496 * 109.47364 * 269.99972 * 3 2 1 5 5 H 1.48507 * 109.46859 * 30.00168 * 3 2 1 6 6 H 1.48503 * 109.47014 * 149.99393 * 3 2 1 7 7 C 1.37870 * 120.00141 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00018 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00164 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.46970 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47070 * 55.00272 * 10 9 7 12 12 N 1.46899 * 109.47394 * 295.00234 * 10 9 7 13 13 C 1.50703 * 109.46966 * 175.00182 * 10 9 7 14 14 C 1.38267 * 119.99098 * 100.00030 * 13 10 9 15 15 C 1.38221 * 120.02242 * 180.02562 * 14 13 10 16 16 C 1.38235 * 120.01566 * 0.02562 * 15 14 13 17 17 C 1.38328 * 119.98565 * 0.02562 * 16 15 14 18 18 Cl 1.73598 * 120.01344 * 179.97438 * 17 16 15 19 19 C 1.38188 * 119.99310 * 279.72922 * 13 10 9 20 20 C 1.50703 * 120.00764 * 359.97438 * 19 13 10 21 21 F 1.39905 * 109.46907 * 90.00005 * 20 19 13 22 22 H 0.97001 * 120.00015 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46983 * 60.00221 * 9 7 2 24 24 H 1.08996 * 109.47393 * 299.99979 * 9 7 2 25 25 H 1.00893 * 111.00096 * 176.05209 * 12 10 9 26 26 H 1.00903 * 110.99833 * 299.99831 * 12 10 9 27 27 H 1.08000 * 119.99027 * 0.02562 * 14 13 10 28 28 H 1.07996 * 119.98984 * 179.97438 * 15 14 13 29 29 H 1.07999 * 120.00835 * 180.02562 * 16 15 14 30 30 H 1.08995 * 109.46984 * 210.00146 * 20 19 13 31 31 H 1.09000 * 109.46699 * 330.00344 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 1 3.5866 -3.1757 -0.8426 12 7 3.6333 -3.2931 1.2545 13 6 5.5234 -2.6383 -0.1254 14 6 6.3098 -2.8125 0.9985 15 6 7.6873 -2.8138 0.8853 16 6 8.2796 -2.6404 -0.3517 17 6 7.4934 -2.4650 -1.4762 18 17 8.2365 -2.2465 -3.0298 19 6 6.1143 -2.4715 -1.3634 20 6 5.2569 -2.2884 -2.5891 21 9 5.0079 -0.9256 -2.7847 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6804 0.8889 24 1 3.8746 -0.6800 -0.8911 25 1 3.9024 -4.2655 1.2522 26 1 4.0245 -2.8116 2.0503 27 1 5.8475 -2.9477 1.9652 28 1 8.3010 -2.9495 1.7635 29 1 9.3560 -2.6418 -0.4401 30 1 5.7757 -2.6914 -3.4589 31 1 4.3120 -2.8146 -2.4535 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260056455.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:32 Heat of formation + Delta-G solvation = -35.492172 kcal Electronic energy + Delta-G solvation = -17121.217325 eV Core-core repulsion = 14149.471922 eV Total energy + Delta-G solvation = -2971.745403 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.068 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -47.28047 -39.75763 -36.77448 -35.44487 -32.41823 -32.31295 -29.93336 -28.91875 -26.37067 -24.73337 -22.06332 -21.49811 -19.76420 -17.27942 -16.62072 -16.43924 -15.70468 -15.49760 -15.17706 -14.51238 -14.32440 -14.20688 -13.72079 -13.41103 -13.18969 -12.50399 -12.29640 -11.82840 -11.68622 -11.37202 -11.28815 -11.20465 -10.62809 -10.55095 -10.29902 -10.15810 -9.68573 -9.11067 -8.87275 -8.59484 -8.43121 -8.15147 -5.92444 -3.87727 1.05186 1.20036 2.02116 3.39626 3.45958 3.50162 3.52588 4.48429 4.55291 4.65812 4.83377 4.98211 5.07524 5.17974 5.30017 5.40918 5.44741 5.59272 5.74772 5.86975 6.01248 6.08747 6.26255 6.29928 6.57689 6.74150 7.14186 7.28116 7.72419 7.89034 7.97964 8.67148 9.18299 9.70215 11.21063 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.023972 B = 0.007324 C = 0.006412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.738295 B = 3822.382323 C = 4365.949771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.066 3.934 3 Si 0.870 3.130 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.269 1.269 7 C -0.495 4.495 8 H 0.080 0.920 9 C -0.006 4.006 10 C 0.137 3.863 11 H 0.090 0.910 12 N -0.817 5.817 13 C -0.067 4.067 14 C -0.127 4.127 15 C -0.094 4.094 16 C -0.129 4.129 17 C -0.012 4.012 18 Cl -0.071 7.071 19 C -0.123 4.123 20 C 0.101 3.899 21 F -0.197 7.197 22 H 0.261 0.739 23 H 0.014 0.986 24 H 0.030 0.970 25 H 0.327 0.673 26 H 0.336 0.664 27 H 0.129 0.871 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.081 0.919 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.375 -7.406 -1.509 18.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.134 4.134 3 Si 0.698 3.302 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.194 1.194 7 C -0.533 4.533 8 H 0.098 0.902 9 C -0.043 4.043 10 C 0.025 3.975 11 H 0.108 0.892 12 N -0.345 5.345 13 C -0.070 4.070 14 C -0.146 4.146 15 C -0.113 4.113 16 C -0.148 4.148 17 C -0.038 4.038 18 Cl -0.042 7.042 19 C -0.125 4.125 20 C 0.047 3.953 21 F -0.178 7.178 22 H 0.070 0.930 23 H 0.033 0.967 24 H 0.048 0.952 25 H 0.138 0.862 26 H 0.150 0.850 27 H 0.147 0.853 28 H 0.149 0.851 29 H 0.149 0.851 30 H 0.099 0.901 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 16.498 -7.049 -1.855 18.037 hybrid contribution 1.659 0.944 0.074 1.910 sum 18.157 -6.105 -1.782 19.238 Atomic orbital electron populations 1.69903 1.06117 1.26504 1.52001 1.24951 0.94649 0.98699 0.95135 0.86928 0.80249 0.84380 0.78615 1.20202 1.21586 1.19370 1.20965 0.88510 0.94572 1.49248 0.90169 1.19748 0.98178 0.89159 0.97255 1.20723 0.84113 0.99530 0.93097 0.89233 1.58730 1.67203 1.04975 1.03589 1.21405 1.00087 0.94024 0.91492 1.21141 0.93597 1.01107 0.98728 1.21095 0.94837 0.98522 0.96821 1.20932 0.99856 1.02715 0.91271 1.20845 0.92371 1.03683 0.86944 1.98355 1.82265 1.95533 1.28072 1.19981 0.92018 1.04015 0.96437 1.20797 1.00144 0.79375 0.95004 1.92839 1.95597 1.33407 1.95948 0.92965 0.96745 0.95181 0.86177 0.85001 0.85277 0.85150 0.85074 0.90131 0.88753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.31 13.96 55.43 0.77 -27.54 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 3 Si 0.87 22.47 27.47 -169.99 -4.67 17.80 16 4 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.27 -6.74 6.54 56.52 0.37 -6.37 16 7 C -0.49 -13.98 9.39 -34.44 -0.32 -14.30 16 8 H 0.08 2.46 7.99 -52.49 -0.42 2.04 16 9 C -0.01 -0.14 3.62 -27.88 -0.10 -0.24 16 10 C 0.14 2.55 2.37 -68.86 -0.16 2.39 16 11 H 0.09 1.69 6.39 -51.93 -0.33 1.36 16 12 N -0.82 -13.85 8.42 -5.65 -0.05 -13.90 16 13 C -0.07 -1.07 5.07 -104.63 -0.53 -1.60 16 14 C -0.13 -1.70 9.25 -39.58 -0.37 -2.06 16 15 C -0.09 -1.08 10.05 -39.59 -0.40 -1.48 16 16 C -0.13 -1.54 9.83 -39.55 -0.39 -1.93 16 17 C -0.01 -0.16 6.31 -39.50 -0.25 -0.41 16 18 Cl -0.07 -0.90 27.31 -51.86 -1.42 -2.32 16 19 C -0.12 -1.91 5.60 -104.59 -0.59 -2.49 16 20 C 0.10 1.58 6.51 36.01 0.23 1.82 16 21 F -0.20 -3.79 15.66 2.25 0.04 -3.76 16 22 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 23 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 24 H 0.03 0.73 5.42 -51.93 -0.28 0.45 16 25 H 0.33 4.50 9.06 -39.30 -0.36 4.15 16 26 H 0.34 5.29 7.29 -39.29 -0.29 5.00 16 27 H 0.13 1.51 6.25 -52.49 -0.33 1.18 16 28 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 30 H 0.08 1.06 6.92 -51.93 -0.36 0.70 16 31 H 0.09 1.44 6.12 -51.93 -0.32 1.12 16 LS Contribution 274.09 15.07 4.13 4.13 Total: -1.00 -32.08 274.09 -7.23 -39.31 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -3.07 Total: 4.74 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -2.97 Total: -18.47 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: 0.73 Total: -41.44 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.04 Total: -3.76 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.67 Total: 17.80 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.42 Total: -2.32 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -32.08 -7.23 -39.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260056455.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.815 kcal (2) G-P(sol) polarization free energy of solvation -32.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds