Wall clock time and date at job start Mon Mar 30 2020 07:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99970 * 2 1 4 4 H 1.48496 * 109.47364 * 269.99972 * 3 2 1 5 5 H 1.48507 * 109.46859 * 30.00168 * 3 2 1 6 6 H 1.48503 * 109.47014 * 149.99393 * 3 2 1 7 7 C 1.37870 * 120.00141 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00018 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00164 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.46970 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47070 * 55.00272 * 10 9 7 12 12 N 1.46899 * 109.47394 * 295.00234 * 10 9 7 13 13 C 1.50703 * 109.46966 * 175.00182 * 10 9 7 14 14 C 1.38267 * 119.99098 * 100.00030 * 13 10 9 15 15 C 1.38221 * 120.02242 * 180.02562 * 14 13 10 16 16 C 1.38235 * 120.01566 * 0.02562 * 15 14 13 17 17 C 1.38328 * 119.98565 * 0.02562 * 16 15 14 18 18 Cl 1.73598 * 120.01344 * 179.97438 * 17 16 15 19 19 C 1.38188 * 119.99310 * 279.72922 * 13 10 9 20 20 C 1.50703 * 120.00764 * 359.97438 * 19 13 10 21 21 F 1.39905 * 109.46907 * 90.00005 * 20 19 13 22 22 H 0.97001 * 120.00015 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46983 * 60.00221 * 9 7 2 24 24 H 1.08996 * 109.47393 * 299.99979 * 9 7 2 25 25 H 1.00893 * 111.00096 * 176.05209 * 12 10 9 26 26 H 1.00903 * 110.99833 * 299.99831 * 12 10 9 27 27 H 1.08000 * 119.99027 * 0.02562 * 14 13 10 28 28 H 1.07996 * 119.98984 * 179.97438 * 15 14 13 29 29 H 1.07999 * 120.00835 * 180.02562 * 16 15 14 30 30 H 1.08995 * 109.46984 * 210.00146 * 20 19 13 31 31 H 1.09000 * 109.46699 * 330.00344 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7002 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 1 3.5866 -3.1757 -0.8426 12 7 3.6333 -3.2931 1.2545 13 6 5.5234 -2.6383 -0.1254 14 6 6.3098 -2.8125 0.9985 15 6 7.6873 -2.8138 0.8853 16 6 8.2796 -2.6404 -0.3517 17 6 7.4934 -2.4650 -1.4762 18 17 8.2365 -2.2465 -3.0298 19 6 6.1143 -2.4715 -1.3634 20 6 5.2569 -2.2884 -2.5891 21 9 5.0079 -0.9256 -2.7847 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6804 0.8889 24 1 3.8746 -0.6800 -0.8911 25 1 3.9024 -4.2655 1.2522 26 1 4.0245 -2.8116 2.0503 27 1 5.8475 -2.9477 1.9652 28 1 8.3010 -2.9495 1.7635 29 1 9.3560 -2.6418 -0.4401 30 1 5.7757 -2.6914 -3.4589 31 1 4.3120 -2.8146 -2.4535 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260056455.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:32 Heat of formation + Delta-G solvation = -56.628948 kcal Electronic energy + Delta-G solvation = -17122.133884 eV Core-core repulsion = 14149.471922 eV Total energy + Delta-G solvation = -2972.661963 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.66195 -40.85509 -37.86141 -36.77606 -34.53720 -33.40561 -31.14594 -30.70702 -27.51995 -26.32089 -23.60155 -22.63990 -21.21060 -19.01594 -17.95500 -17.84226 -17.03128 -16.66095 -16.65061 -16.09320 -15.72627 -15.41453 -15.07200 -14.92025 -14.43320 -14.36747 -13.55640 -13.34922 -13.09724 -12.89161 -12.57880 -12.40158 -12.32135 -11.95501 -11.81945 -11.64909 -11.57800 -11.25333 -10.70459 -9.92490 -9.72117 -9.46712 -8.20818 -6.19419 0.03577 0.15749 1.01970 1.33853 1.36072 1.45195 2.38584 2.50279 3.13903 3.38940 3.57110 3.78967 3.81750 3.89610 4.06926 4.34543 4.35199 4.42615 4.56400 4.58880 4.75239 4.86210 5.11729 5.20843 5.25484 5.33675 5.53760 5.69399 5.76059 6.33272 6.47556 6.78802 6.89058 7.41645 8.96163 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.023972 B = 0.007324 C = 0.006412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.738295 B = 3822.382323 C = 4365.949771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.005 3.995 3 Si 0.933 3.067 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.254 1.254 7 C -0.491 4.491 8 H 0.043 0.957 9 C 0.000 4.000 10 C 0.148 3.852 11 H 0.077 0.923 12 N -0.831 5.831 13 C -0.087 4.087 14 C -0.128 4.128 15 C -0.083 4.083 16 C -0.120 4.120 17 C -0.023 4.023 18 Cl -0.065 7.065 19 C -0.139 4.139 20 C 0.094 3.906 21 F -0.220 7.220 22 H 0.262 0.738 23 H 0.011 0.989 24 H 0.024 0.976 25 H 0.346 0.654 26 H 0.343 0.657 27 H 0.144 0.856 28 H 0.170 0.830 29 H 0.160 0.840 30 H 0.103 0.897 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.548 -7.492 -0.620 21.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.190 4.190 3 Si 0.759 3.241 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.529 4.529 8 H 0.061 0.939 9 C -0.038 4.038 10 C 0.036 3.964 11 H 0.094 0.906 12 N -0.362 5.362 13 C -0.090 4.090 14 C -0.146 4.146 15 C -0.101 4.101 16 C -0.139 4.139 17 C -0.050 4.050 18 Cl -0.036 7.036 19 C -0.141 4.141 20 C 0.039 3.961 21 F -0.201 7.201 22 H 0.071 0.929 23 H 0.029 0.971 24 H 0.042 0.958 25 H 0.160 0.840 26 H 0.159 0.841 27 H 0.162 0.838 28 H 0.187 0.813 29 H 0.178 0.822 30 H 0.121 0.879 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 19.695 -7.157 -0.963 20.977 hybrid contribution 0.705 0.854 -0.209 1.127 sum 20.400 -6.303 -1.172 21.384 Atomic orbital electron populations 1.70049 1.07871 1.27473 1.54066 1.25794 0.95412 1.02526 0.95298 0.85911 0.79459 0.80028 0.78728 1.20051 1.21005 1.17828 1.21236 0.91114 0.92974 1.47583 0.93858 1.19593 0.94830 0.92830 0.96506 1.20239 0.86454 0.96259 0.93444 0.90558 1.58611 1.67959 1.06323 1.03264 1.21055 0.98205 0.96868 0.92824 1.21380 0.94542 1.00323 0.98396 1.21524 0.94211 0.96388 0.98004 1.21362 1.01240 1.00622 0.90663 1.20992 0.91940 1.04020 0.88038 1.98357 1.81895 1.95513 1.27802 1.19966 0.92916 1.05194 0.95993 1.20991 1.00526 0.77939 0.96600 1.92779 1.95805 1.35368 1.96159 0.92908 0.97051 0.95813 0.84033 0.84136 0.83790 0.81252 0.82204 0.87916 0.89365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.22 13.96 21.44 0.30 -60.92 16 2 C 0.01 0.32 5.47 84.65 0.46 0.79 16 3 Si 0.93 46.75 27.47 68.60 1.88 48.63 16 4 H -0.27 -13.62 7.11 99.48 0.71 -12.91 16 5 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 6 H -0.25 -12.02 6.54 99.48 0.65 -11.37 16 7 C -0.49 -28.45 9.39 25.60 0.24 -28.21 16 8 H 0.04 2.77 7.99 -2.91 -0.02 2.75 16 9 C 0.00 0.00 3.62 29.85 0.11 0.11 16 10 C 0.15 5.49 2.37 44.17 0.10 5.59 16 11 H 0.08 2.97 6.39 -2.39 -0.02 2.95 16 12 N -0.83 -27.64 8.42 -171.79 -1.45 -29.09 16 13 C -0.09 -2.62 5.07 -19.87 -0.10 -2.72 16 14 C -0.13 -3.01 9.25 22.27 0.21 -2.81 16 15 C -0.08 -1.52 10.05 22.26 0.22 -1.30 16 16 C -0.12 -2.38 9.83 22.29 0.22 -2.16 16 17 C -0.02 -0.58 6.31 22.32 0.14 -0.44 16 18 Cl -0.06 -1.49 27.31 -2.72 -0.07 -1.57 16 19 C -0.14 -4.13 5.60 -19.84 -0.11 -4.24 16 20 C 0.09 2.92 6.51 71.24 0.46 3.38 16 21 F -0.22 -8.50 15.66 44.97 0.70 -7.80 16 22 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 23 H 0.01 0.54 7.20 -2.39 -0.02 0.52 16 24 H 0.02 1.16 5.42 -2.39 -0.01 1.14 16 25 H 0.35 9.14 9.06 -89.70 -0.81 8.33 16 26 H 0.34 10.34 7.29 -89.69 -0.65 9.69 16 27 H 0.14 2.88 6.25 -2.91 -0.02 2.86 16 28 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16 29 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 30 H 0.10 2.63 6.92 -2.39 -0.02 2.62 16 31 H 0.09 2.78 6.12 -2.39 -0.01 2.77 16 Total: -1.00 -70.49 274.09 2.99 -67.50 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -0.34 Total: 15.24 kcal Atomic # 6 Polarization: -33.96 SS G_CDS: 1.96 Total: -32.00 kcal Atomic # 7 Polarization: -88.86 SS G_CDS: -1.15 Total: -90.01 kcal Atomic # 9 Polarization: -8.50 SS G_CDS: 0.70 Total: -7.80 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 1.88 Total: 48.63 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -0.07 Total: -1.57 kcal Total: -70.49 2.99 -67.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260056455.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.874 kcal (2) G-P(sol) polarization free energy of solvation -70.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds