Wall clock time and date at job start Mon Mar 30 2020 06:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46849 * 2 1 4 4 C 1.50702 * 109.47070 * 240.00414 * 2 1 3 5 5 H 1.08001 * 119.99541 * 239.99402 * 4 2 1 6 6 C 1.37875 * 120.00039 * 59.99646 * 4 2 1 7 7 N 1.31509 * 120.00158 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99641 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.46978 * 90.00122 * 8 6 4 10 10 H 1.48502 * 109.46764 * 210.00127 * 8 6 4 11 11 H 1.48501 * 109.47144 * 330.00028 * 8 6 4 12 12 N 1.46501 * 109.47398 * 119.99881 * 2 1 3 13 13 C 1.46502 * 119.99808 * 60.00310 * 12 2 1 14 14 C 1.34775 * 120.00266 * 240.00072 * 12 2 1 15 15 O 1.21713 * 119.99746 * 3.45096 * 14 12 2 16 16 C 1.46488 * 119.99878 * 183.44868 * 14 12 2 17 17 O 1.34986 * 126.01326 * 352.94697 * 16 14 12 18 18 C 1.33938 * 109.40427 * 180.15873 * 17 16 14 19 19 C 1.35074 * 108.82382 * 359.60282 * 18 17 16 20 20 C 1.36715 * 126.00546 * 172.67205 * 16 14 12 21 21 Cl 1.73599 * 126.66633 * 359.96120 * 20 16 14 22 22 H 1.08997 * 109.46849 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47140 * 299.99872 * 1 2 3 24 24 H 1.08996 * 109.47319 * 59.99993 * 1 2 3 25 25 H 0.96999 * 119.99879 * 180.02562 * 7 6 4 26 26 H 1.09005 * 109.47097 * 263.93815 * 13 12 2 27 27 H 1.09005 * 109.47022 * 23.93242 * 13 12 2 28 28 H 1.08997 * 109.47345 * 143.93542 * 13 12 2 29 29 H 1.08006 * 125.58467 * 179.86846 * 18 17 16 30 30 H 1.08001 * 126.43768 * 180.26332 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.3427 -2.1615 -4.4119 10 1 2.4865 -0.1412 -5.1123 11 1 3.6293 -1.7582 -3.7123 12 7 2.0184 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0355 1.1464 1.9235 16 6 3.3437 -0.7463 3.2399 17 8 3.0489 -2.0110 3.6083 18 6 3.7366 -2.3241 4.7142 19 6 4.4943 -1.2644 5.0709 20 6 4.2505 -0.2471 4.1330 21 17 4.9631 1.3358 4.1117 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 0.7088 1.1614 -3.4844 26 1 0.7993 -2.1452 2.0889 27 1 1.4246 -2.5693 0.4772 28 1 2.5063 -2.6087 1.8903 29 1 3.6955 -3.2706 5.2330 30 1 5.1623 -1.2095 5.9178 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260077580.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:21 Heat of formation + Delta-G solvation = -16.007723 kcal Electronic energy + Delta-G solvation = -17181.754200 eV Core-core repulsion = 14198.480916 eV Total energy + Delta-G solvation = -2983.273284 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.70658 -38.84699 -36.48609 -35.43897 -33.09619 -32.62644 -30.32269 -28.85273 -26.19444 -25.24985 -23.38139 -21.89803 -20.76694 -19.31870 -17.30925 -16.55589 -16.50823 -16.02072 -15.38778 -14.37405 -14.21726 -13.87301 -13.61215 -13.19164 -12.98273 -12.54950 -12.45256 -12.07107 -11.62375 -11.33700 -11.07026 -10.84997 -10.77750 -10.72029 -10.29020 -10.19915 -9.65028 -9.36355 -9.18237 -8.60093 -8.46367 -7.66456 -6.10108 -4.18560 1.14483 2.15203 2.22396 2.92741 3.25538 3.32787 3.35633 3.64774 3.83568 4.37343 4.68105 4.83969 5.17954 5.21349 5.52758 5.60600 5.91834 6.02849 6.06976 6.38879 6.72359 6.75338 6.83064 7.02338 7.33984 7.46318 7.67155 7.96857 8.13193 8.39414 8.71547 8.90179 9.47756 10.95313 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.029034 B = 0.006084 C = 0.005731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.171554 B = 4601.508192 C = 4884.806901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.258 3.742 3 H 0.067 0.933 4 C -0.529 4.529 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.577 5.577 13 C 0.079 3.921 14 C 0.578 3.422 15 O -0.514 6.514 16 C -0.034 4.034 17 O -0.143 6.143 18 C -0.018 4.018 19 C -0.212 4.212 20 C -0.070 4.070 21 Cl -0.012 7.012 22 H 0.031 0.969 23 H 0.013 0.987 24 H 0.095 0.905 25 H 0.264 0.736 26 H 0.046 0.954 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.212 0.788 30 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.926 -7.148 13.620 15.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.084 0.916 4 C -0.567 4.567 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.306 5.306 13 C -0.064 4.064 14 C 0.363 3.637 15 O -0.393 6.393 16 C -0.088 4.088 17 O -0.039 6.039 18 C -0.088 4.088 19 C -0.232 4.232 20 C -0.100 4.100 21 Cl 0.017 6.983 22 H 0.050 0.950 23 H 0.032 0.968 24 H 0.114 0.886 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.105 0.895 28 H 0.083 0.917 29 H 0.229 0.771 30 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 3.787 -6.439 13.162 15.134 hybrid contribution 0.544 -0.480 -0.569 0.922 sum 4.331 -6.918 12.593 15.007 Atomic orbital electron populations 1.22088 0.97795 0.99590 1.01005 1.19073 0.91181 0.94564 0.79341 0.91560 1.21302 1.32103 1.13183 0.90150 0.92107 1.24884 0.94876 0.94941 0.98970 1.69875 1.36199 1.22460 1.23884 0.86469 0.79213 0.79297 0.82284 1.20559 1.21040 1.19891 1.48243 1.47318 1.12081 1.23004 1.21820 0.99594 0.82690 1.02305 1.16641 0.80364 0.86150 0.80575 1.90886 1.60384 1.13644 1.74368 1.22581 1.02595 0.83487 1.00150 1.84506 1.55068 1.27574 1.36707 1.24316 0.95284 1.00694 0.88456 1.21578 1.05871 0.92836 1.02900 1.21215 1.00182 0.90610 0.97952 1.98370 1.81446 1.20467 1.98004 0.95021 0.96819 0.88639 0.92584 0.93589 0.89538 0.91686 0.77104 0.82217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 8.97 37.16 0.33 -3.17 16 2 C 0.26 6.61 2.63 -69.08 -0.18 6.43 16 3 H 0.07 1.95 6.90 -51.93 -0.36 1.59 16 4 C -0.53 -14.23 7.95 -34.44 -0.27 -14.50 16 5 H 0.06 1.61 7.44 -52.49 -0.39 1.22 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -24.90 11.32 55.43 0.63 -24.28 16 8 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 12 N -0.58 -12.72 2.75 -176.87 -0.49 -13.21 16 13 C 0.08 1.40 8.56 59.85 0.51 1.91 16 14 C 0.58 12.71 7.63 -12.94 -0.10 12.61 16 15 O -0.51 -12.84 14.91 5.18 0.08 -12.76 16 16 C -0.03 -0.61 6.77 -36.81 -0.25 -0.86 16 17 O -0.14 -2.06 7.29 4.77 0.03 -2.02 16 18 C -0.02 -0.19 12.07 29.61 0.36 0.17 16 19 C -0.21 -2.50 10.88 -39.86 -0.43 -2.93 16 20 C -0.07 -1.12 6.75 -39.28 -0.27 -1.38 16 21 Cl -0.01 -0.20 27.87 -51.86 -1.45 -1.64 16 22 H 0.03 0.69 7.67 -51.93 -0.40 0.30 16 23 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 24 H 0.10 2.49 6.07 -51.93 -0.32 2.18 16 25 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.09 1.57 7.12 -51.93 -0.37 1.20 16 28 H 0.06 1.03 5.41 -51.93 -0.28 0.75 16 29 H 0.21 1.11 8.06 -52.48 -0.42 0.69 16 30 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 273.83 15.07 4.13 4.13 Total: -1.00 -30.84 273.83 -5.42 -36.26 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: -2.94 Total: -2.33 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -0.39 Total: -0.03 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.14 Total: -37.49 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: 0.11 Total: -14.78 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.45 Total: -1.64 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.84 -5.42 -36.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260077580.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.251 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds