Wall clock time and date at job start Mon Mar 30 2020 06:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46849 * 2 1 4 4 C 1.50702 * 109.47070 * 240.00414 * 2 1 3 5 5 H 1.08001 * 119.99541 * 239.99402 * 4 2 1 6 6 C 1.37875 * 120.00039 * 59.99646 * 4 2 1 7 7 N 1.31509 * 120.00158 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99641 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.46978 * 90.00122 * 8 6 4 10 10 H 1.48502 * 109.46764 * 210.00127 * 8 6 4 11 11 H 1.48501 * 109.47144 * 330.00028 * 8 6 4 12 12 N 1.46501 * 109.47398 * 119.99881 * 2 1 3 13 13 C 1.46502 * 119.99808 * 60.00310 * 12 2 1 14 14 C 1.34775 * 120.00266 * 240.00072 * 12 2 1 15 15 O 1.21713 * 119.99746 * 3.45096 * 14 12 2 16 16 C 1.46488 * 119.99878 * 183.44868 * 14 12 2 17 17 O 1.34986 * 126.01326 * 352.94697 * 16 14 12 18 18 C 1.33938 * 109.40427 * 180.15873 * 17 16 14 19 19 C 1.35074 * 108.82382 * 359.60282 * 18 17 16 20 20 C 1.36715 * 126.00546 * 172.67205 * 16 14 12 21 21 Cl 1.73599 * 126.66633 * 359.96120 * 20 16 14 22 22 H 1.08997 * 109.46849 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47140 * 299.99872 * 1 2 3 24 24 H 1.08996 * 109.47319 * 59.99993 * 1 2 3 25 25 H 0.96999 * 119.99879 * 180.02562 * 7 6 4 26 26 H 1.09005 * 109.47097 * 263.93815 * 13 12 2 27 27 H 1.09005 * 109.47022 * 23.93242 * 13 12 2 28 28 H 1.08997 * 109.47345 * 143.93542 * 13 12 2 29 29 H 1.08006 * 125.58467 * 179.86846 * 18 17 16 30 30 H 1.08001 * 126.43768 * 180.26332 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.3427 -2.1615 -4.4119 10 1 2.4865 -0.1412 -5.1123 11 1 3.6293 -1.7582 -3.7123 12 7 2.0184 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0355 1.1464 1.9235 16 6 3.3437 -0.7463 3.2399 17 8 3.0489 -2.0110 3.6083 18 6 3.7366 -2.3241 4.7142 19 6 4.4943 -1.2644 5.0709 20 6 4.2505 -0.2471 4.1330 21 17 4.9631 1.3358 4.1117 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 0.7088 1.1614 -3.4844 26 1 0.7993 -2.1452 2.0889 27 1 1.4246 -2.5693 0.4772 28 1 2.5063 -2.6087 1.8903 29 1 3.6955 -3.2706 5.2330 30 1 5.1623 -1.2095 5.9178 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260077580.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:21 Heat of formation + Delta-G solvation = -36.010732 kcal Electronic energy + Delta-G solvation = -17182.621595 eV Core-core repulsion = 14198.480916 eV Total energy + Delta-G solvation = -2984.140679 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.80376 -40.51989 -37.77243 -37.20033 -34.89293 -33.85793 -31.96582 -30.32527 -27.71214 -27.32010 -24.85478 -22.94362 -22.30631 -20.82835 -18.75520 -18.39107 -17.78277 -17.46426 -17.08471 -16.18650 -15.80343 -15.19648 -14.81391 -14.54894 -14.43751 -14.08411 -13.95028 -13.55178 -13.37100 -13.03207 -12.76013 -12.73936 -12.60872 -12.23543 -12.15353 -12.02069 -11.23376 -11.00129 -10.69520 -10.53532 -9.82494 -9.35459 -8.16097 -6.33012 -0.09210 0.93666 1.26798 1.41913 1.43686 1.53545 1.75751 2.07904 2.32801 2.47172 3.12211 3.56126 3.71635 4.23678 4.31268 4.52153 4.67907 4.73070 4.78053 4.88478 5.00483 5.03229 5.21652 5.43620 5.51401 5.62632 5.75165 5.99762 6.12127 6.64211 6.72955 7.13182 7.39118 8.88713 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.029034 B = 0.006084 C = 0.005731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.171554 B = 4601.508192 C = 4884.806901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.262 3.738 3 H 0.015 0.985 4 C -0.542 4.542 5 H 0.062 0.938 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.967 3.033 9 H -0.266 1.266 10 H -0.285 1.285 11 H -0.271 1.271 12 N -0.587 5.587 13 C 0.081 3.919 14 C 0.570 3.430 15 O -0.564 6.564 16 C -0.079 4.079 17 O -0.146 6.146 18 C 0.026 3.974 19 C -0.221 4.221 20 C -0.067 4.067 21 Cl -0.027 7.027 22 H 0.048 0.952 23 H 0.020 0.980 24 H 0.071 0.929 25 H 0.266 0.734 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.274 0.726 30 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.548 -10.230 15.219 18.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.161 3.839 3 H 0.033 0.967 4 C -0.580 4.580 5 H 0.080 0.920 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.792 3.208 9 H -0.191 1.191 10 H -0.211 1.211 11 H -0.196 1.196 12 N -0.316 5.316 13 C -0.061 4.061 14 C 0.358 3.642 15 O -0.446 6.446 16 C -0.132 4.132 17 O -0.041 6.041 18 C -0.043 4.043 19 C -0.240 4.240 20 C -0.097 4.097 21 Cl 0.002 6.998 22 H 0.067 0.933 23 H 0.039 0.961 24 H 0.090 0.910 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.289 0.711 30 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 4.400 -9.557 14.781 18.143 hybrid contribution 0.401 0.416 -0.900 1.069 sum 4.801 -9.141 13.881 17.300 Atomic orbital electron populations 1.21876 0.96727 1.00306 1.00110 1.18673 0.91943 0.92371 0.80930 0.96728 1.21542 1.32236 1.13251 0.90973 0.92028 1.25731 0.94971 0.95590 1.01990 1.70016 1.37133 1.23732 1.24583 0.85425 0.78847 0.78277 0.78291 1.19059 1.21074 1.19621 1.48205 1.47670 1.13656 1.22101 1.21986 1.01348 0.80230 1.02544 1.17114 0.79652 0.85980 0.81481 1.90835 1.61970 1.15787 1.75989 1.21592 1.05522 0.85524 1.00578 1.84442 1.55695 1.25719 1.38279 1.25565 0.91358 1.01798 0.85575 1.21997 1.07155 0.91627 1.03229 1.21693 0.99082 0.90597 0.98377 1.98365 1.81477 1.21916 1.98034 0.93297 0.96131 0.91031 0.92498 0.91517 0.90299 0.89481 0.71079 0.78890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.46 8.97 71.98 0.65 -5.82 16 2 C 0.26 13.97 2.63 44.25 0.12 14.08 16 3 H 0.01 0.93 6.90 -2.39 -0.02 0.91 16 4 C -0.54 -29.75 7.95 25.60 0.20 -29.55 16 5 H 0.06 3.29 7.44 -2.91 -0.02 3.27 16 6 C 0.02 0.94 5.30 84.66 0.45 1.39 16 7 N -0.92 -52.93 11.32 21.45 0.24 -52.69 16 8 Si 0.97 43.07 29.54 68.60 2.03 45.10 16 9 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 10 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 12 N -0.59 -26.39 2.75 -831.72 -2.29 -28.68 16 13 C 0.08 2.75 8.56 127.77 1.09 3.84 16 14 C 0.57 25.81 7.63 86.39 0.66 26.47 16 15 O -0.56 -29.82 14.91 -4.39 -0.07 -29.89 16 16 C -0.08 -2.74 6.77 24.06 0.16 -2.58 16 17 O -0.15 -3.69 7.29 -5.85 -0.04 -3.73 16 18 C 0.03 0.39 12.07 67.09 0.81 1.20 16 19 C -0.22 -4.26 10.88 22.09 0.24 -4.02 16 20 C -0.07 -2.07 6.75 22.46 0.15 -1.91 16 21 Cl -0.03 -0.89 27.87 -2.72 -0.08 -0.97 16 22 H 0.05 2.16 7.67 -2.39 -0.02 2.15 16 23 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.07 3.86 6.07 -2.39 -0.01 3.85 16 25 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 26 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 27 H 0.08 2.78 7.12 -2.38 -0.02 2.77 16 28 H 0.09 2.56 5.41 -2.39 -0.01 2.54 16 29 H 0.27 0.61 8.06 -2.91 -0.02 0.58 16 30 H 0.19 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -71.80 273.83 5.49 -66.31 By element: Atomic # 1 Polarization: 0.28 SS G_CDS: 1.16 Total: 1.44 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: 4.53 Total: 3.10 kcal Atomic # 7 Polarization: -79.32 SS G_CDS: -2.05 Total: -81.37 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -0.11 Total: -33.61 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -0.08 Total: -0.97 kcal Total: -71.80 5.49 -66.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260077580.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.298 kcal (2) G-P(sol) polarization free energy of solvation -71.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds