Wall clock time and date at job start Mon Mar 30 2020 06:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47147 * 2 1 4 4 C 1.50698 * 109.47229 * 120.00059 * 2 1 3 5 5 H 1.07996 * 120.00651 * 119.99884 * 4 2 1 6 6 C 1.37884 * 119.99580 * 300.00161 * 4 2 1 7 7 N 1.31513 * 120.00148 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99680 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47023 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.46922 * 119.99646 * 8 6 4 11 11 H 1.48503 * 109.46993 * 239.99579 * 8 6 4 12 12 N 1.46503 * 109.47313 * 240.00053 * 2 1 3 13 13 C 1.46502 * 119.99755 * 300.00223 * 12 2 1 14 14 C 1.34767 * 120.00320 * 120.00146 * 12 2 1 15 15 O 1.21717 * 120.00313 * 3.45333 * 14 12 2 16 16 C 1.46494 * 120.00146 * 183.45412 * 14 12 2 17 17 O 1.34987 * 126.01092 * 352.93491 * 16 14 12 18 18 C 1.33936 * 109.40497 * 180.15654 * 17 16 14 19 19 C 1.35073 * 108.82234 * 359.60135 * 18 17 16 20 20 C 1.36711 * 126.00698 * 172.65069 * 16 14 12 21 21 Cl 1.73597 * 126.67057 * 359.96550 * 20 16 14 22 22 H 1.08998 * 109.46794 * 59.99937 * 1 2 3 23 23 H 1.08997 * 109.47147 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47163 * 300.00411 * 1 2 3 25 25 H 0.97002 * 119.99728 * 180.02562 * 7 6 4 26 26 H 1.09005 * 109.47097 * 263.93380 * 13 12 2 27 27 H 1.09005 * 109.47022 * 23.92807 * 13 12 2 28 28 H 1.08997 * 109.47345 * 143.93106 * 13 12 2 29 29 H 1.07997 * 125.58547 * 179.86418 * 18 17 16 30 30 H 1.07998 * 126.43690 * 180.26853 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8303 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.1454 -2.2876 3.6038 10 1 3.1466 -0.1873 4.8165 11 1 1.1659 -1.5866 4.8161 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.7932 -0.0357 -2.0833 15 8 3.1393 1.1097 -1.8601 16 6 3.2190 -0.7023 -3.3163 17 8 3.0220 -2.0016 -3.6248 18 6 3.5480 -2.2576 -4.8296 19 6 4.0861 -1.1202 -5.3209 20 6 3.8810 -0.1166 -4.3592 21 17 4.3719 1.5446 -4.4737 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 0.7094 1.1619 3.4844 26 1 2.4680 -2.7352 -1.0670 27 1 0.7437 -2.3286 -0.8941 28 1 1.5182 -2.2594 -2.4953 29 1 3.5393 -3.2154 -5.3286 30 1 4.5806 -1.0040 -6.2739 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260077595.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:24 Heat of formation + Delta-G solvation = -35.316298 kcal Electronic energy + Delta-G solvation = -17177.204984 eV Core-core repulsion = 14193.094418 eV Total energy + Delta-G solvation = -2984.110566 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.80597 -40.52154 -37.77415 -37.20611 -34.89564 -33.85949 -31.96270 -30.32511 -27.75222 -27.30703 -24.85827 -22.94048 -22.29568 -20.81357 -18.74703 -18.44441 -17.70398 -17.53143 -17.08578 -16.19598 -15.79100 -15.17234 -14.80946 -14.58250 -14.51764 -14.08964 -13.99012 -13.51949 -13.36864 -12.99864 -12.85030 -12.73151 -12.55253 -12.20585 -12.15179 -12.01976 -11.20549 -11.00937 -10.69544 -10.54425 -9.82519 -9.35881 -8.16229 -6.32827 -0.09393 0.93509 1.26790 1.40933 1.42710 1.54048 1.75207 2.10082 2.30528 2.47302 3.12022 3.55662 3.71508 4.23772 4.30045 4.48685 4.66578 4.74080 4.79287 4.86978 5.00691 5.02222 5.21338 5.41793 5.53104 5.62729 5.76093 5.99205 6.12195 6.64290 6.73384 7.13262 7.39291 8.88629 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.030720 B = 0.006004 C = 0.005599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.251314 B = 4662.806517 C = 4999.366293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.261 3.739 3 H 0.015 0.985 4 C -0.539 4.539 5 H 0.059 0.941 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.966 3.034 9 H -0.266 1.266 10 H -0.285 1.285 11 H -0.272 1.272 12 N -0.587 5.587 13 C 0.084 3.916 14 C 0.569 3.431 15 O -0.563 6.563 16 C -0.079 4.079 17 O -0.147 6.147 18 C 0.026 3.974 19 C -0.221 4.221 20 C -0.067 4.067 21 Cl -0.026 7.026 22 H 0.022 0.978 23 H 0.050 0.950 24 H 0.072 0.928 25 H 0.266 0.734 26 H 0.056 0.944 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.274 0.726 30 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.361 -9.768 -16.005 19.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.160 3.840 3 H 0.033 0.967 4 C -0.578 4.578 5 H 0.077 0.923 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.791 3.209 9 H -0.191 1.191 10 H -0.211 1.211 11 H -0.197 1.197 12 N -0.317 5.317 13 C -0.058 4.058 14 C 0.357 3.643 15 O -0.445 6.445 16 C -0.132 4.132 17 O -0.042 6.042 18 C -0.043 4.043 19 C -0.240 4.240 20 C -0.097 4.097 21 Cl 0.002 6.998 22 H 0.041 0.959 23 H 0.069 0.931 24 H 0.090 0.910 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.289 0.711 30 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 3.304 -9.133 -15.514 18.303 hybrid contribution 0.400 0.418 0.912 1.080 sum 3.704 -8.715 -14.602 17.404 Atomic orbital electron populations 1.21900 0.96610 1.00417 1.00246 1.18684 0.91952 0.92366 0.80999 0.96687 1.21561 1.32081 1.13105 0.91042 0.92265 1.25727 0.94993 0.95625 1.01968 1.70020 1.37201 1.23773 1.24507 0.85384 0.78272 0.78439 0.78779 1.19058 1.21091 1.19722 1.48200 1.47884 1.13531 1.22046 1.21946 1.01646 0.79939 1.02233 1.17116 0.79616 0.85473 0.82059 1.90839 1.58229 1.18591 1.76864 1.21589 1.10081 0.83691 0.97875 1.84439 1.61413 1.24153 1.34196 1.25563 0.94049 1.01935 0.82733 1.21997 1.08842 0.90558 1.02586 1.21686 1.02367 0.89156 0.96471 1.98365 1.89505 1.14087 1.97799 0.95933 0.93095 0.90980 0.92505 0.92561 0.90161 0.88973 0.71096 0.78871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.48 8.96 71.98 0.64 -5.84 16 2 C 0.26 13.92 2.62 44.24 0.12 14.03 16 3 H 0.02 0.95 6.90 -2.39 -0.02 0.94 16 4 C -0.54 -29.84 8.37 25.60 0.21 -29.63 16 5 H 0.06 3.21 7.65 -2.91 -0.02 3.19 16 6 C 0.02 0.92 5.30 84.66 0.45 1.37 16 7 N -0.92 -53.00 11.32 21.45 0.24 -52.76 16 8 Si 0.97 43.37 29.54 68.60 2.03 45.40 16 9 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 12 N -0.59 -26.41 2.75 -831.72 -2.29 -28.70 16 13 C 0.08 2.87 8.83 127.77 1.13 4.00 16 14 C 0.57 25.77 7.63 86.40 0.66 26.43 16 15 O -0.56 -29.84 14.91 -4.40 -0.07 -29.91 16 16 C -0.08 -2.74 6.77 24.07 0.16 -2.58 16 17 O -0.15 -3.70 7.29 -5.84 -0.04 -3.74 16 18 C 0.03 0.39 12.07 67.09 0.81 1.20 16 19 C -0.22 -4.21 10.88 22.09 0.24 -3.97 16 20 C -0.07 -2.03 6.75 22.46 0.15 -1.88 16 21 Cl -0.03 -0.87 27.87 -2.72 -0.08 -0.95 16 22 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.05 2.23 6.67 -2.39 -0.02 2.21 16 24 H 0.07 3.87 6.07 -2.38 -0.01 3.85 16 25 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 26 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 27 H 0.08 2.69 6.44 -2.38 -0.02 2.68 16 28 H 0.09 2.58 5.41 -2.39 -0.01 2.57 16 29 H 0.27 0.59 8.06 -2.91 -0.02 0.56 16 30 H 0.19 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -72.13 273.04 5.54 -66.59 By element: Atomic # 1 Polarization: -0.24 SS G_CDS: 1.17 Total: 0.93 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: 4.58 Total: 3.14 kcal Atomic # 7 Polarization: -79.41 SS G_CDS: -2.05 Total: -81.46 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: -0.11 Total: -33.65 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.08 Total: -0.95 kcal Total: -72.13 5.54 -66.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260077595.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.272 kcal (2) G-P(sol) polarization free energy of solvation -72.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds