Wall clock time and date at job start Mon Mar 30 2020 06:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47576 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47046 * 119.99929 * 9 7 5 12 12 H 1.48498 * 109.47240 * 239.99731 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21696 * 120.00229 * 0.02562 * 14 13 3 16 16 C 1.46657 * 120.00079 * 179.97438 * 14 13 3 17 17 C 1.36554 * 125.97896 * 179.97438 * 16 14 13 18 18 C 1.40423 * 106.70932 * 179.97438 * 17 16 14 19 19 Cl 1.73606 * 126.44828 * 180.02562 * 18 17 16 20 20 C 1.35196 * 107.09951 * 0.02562 * 18 17 16 21 21 O 1.33983 * 108.74976 * 359.72818 * 20 18 17 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 26 26 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 27 27 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 28 28 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 29 29 H 1.08005 * 126.64118 * 0.02575 * 17 16 14 30 30 H 1.07997 * 125.62259 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5988 1.5443 0.1931 11 1 6.4000 1.6156 2.6091 12 1 6.4962 -0.5190 1.4625 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3419 2.6326 -0.4308 16 6 0.0473 3.3206 -2.6198 17 6 -1.1488 3.9304 -2.8692 18 6 -1.0865 4.4189 -4.1843 19 17 -2.3362 5.2835 -5.0237 20 6 0.1299 4.0891 -4.6736 21 8 0.8119 3.4323 -3.7256 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 3.8293 -0.0605 2.9501 28 1 2.2718 2.1232 -1.9978 29 1 -1.9812 4.0204 -2.1868 30 1 0.4935 4.3207 -5.6638 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260078412.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:28 Heat of formation + Delta-G solvation = -35.699818 kcal Electronic energy + Delta-G solvation = -16765.587481 eV Core-core repulsion = 13781.460284 eV Total energy + Delta-G solvation = -2984.127197 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.77535 -38.95518 -36.83846 -35.24330 -32.95698 -32.42993 -31.19081 -29.66277 -27.05143 -23.79028 -22.62799 -21.84326 -20.40004 -19.50376 -18.54827 -16.68178 -16.44527 -15.82155 -15.40539 -14.46891 -14.43199 -14.23919 -13.45478 -13.30841 -13.13673 -12.71764 -12.51652 -12.14536 -11.60230 -11.31626 -11.11882 -11.01861 -10.89698 -10.38016 -10.26412 -9.76551 -9.71613 -9.49115 -9.11673 -8.72671 -8.56695 -7.97629 -6.17502 -4.27173 1.10086 1.85736 2.07684 2.76171 3.21593 3.29780 3.32439 3.64415 3.91210 4.32226 4.63745 4.83520 5.14425 5.35821 5.49954 5.73689 6.03090 6.34034 6.39822 6.58701 6.64583 6.97956 7.12611 7.21703 7.30898 7.54875 7.65457 7.81619 8.09851 8.48184 8.65670 8.90083 9.39784 10.87983 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.038364 B = 0.004681 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.677093 B = 5980.670738 C = 6468.525545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.128 4.128 3 C 0.268 3.732 4 H 0.054 0.946 5 C -0.536 4.536 6 H 0.063 0.937 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.903 3.097 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.689 5.689 14 C 0.583 3.417 15 O -0.522 6.522 16 C -0.039 4.039 17 C -0.131 4.131 18 C -0.140 4.140 19 Cl -0.035 7.035 20 C -0.001 4.001 21 O -0.148 6.148 22 H 0.051 0.949 23 H 0.025 0.975 24 H 0.037 0.963 25 H 0.102 0.898 26 H 0.033 0.967 27 H 0.265 0.735 28 H 0.395 0.605 29 H 0.168 0.832 30 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.078 5.910 -12.964 15.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.167 3.833 4 H 0.072 0.928 5 C -0.574 4.574 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.336 5.336 14 C 0.366 3.634 15 O -0.401 6.401 16 C -0.092 4.092 17 C -0.152 4.152 18 C -0.169 4.169 19 Cl -0.007 7.007 20 C -0.072 4.072 21 O -0.043 6.043 22 H 0.070 0.930 23 H 0.045 0.955 24 H 0.056 0.944 25 H 0.120 0.880 26 H 0.052 0.948 27 H 0.075 0.925 28 H 0.228 0.772 29 H 0.185 0.815 30 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -6.379 5.709 -12.146 14.860 hybrid contribution 0.924 0.200 -0.492 1.066 sum -5.455 5.908 -12.639 14.980 Atomic orbital electron populations 1.21862 0.98289 0.98363 1.01188 1.21954 0.92662 0.99501 1.02604 1.18951 0.94653 0.89365 0.80365 0.92843 1.21240 0.90421 1.39272 1.06500 0.91866 1.24877 0.98757 0.94663 0.95289 1.69897 1.35140 1.37490 1.09310 0.86372 0.84642 0.77816 0.78168 1.19701 1.20829 1.20826 1.46527 1.13731 1.54222 1.19102 1.16553 0.83745 0.79451 0.83670 1.90876 1.51837 1.60385 1.37034 1.22771 0.91601 1.06419 0.88409 1.21701 0.98774 0.99563 0.95142 1.21045 0.93176 1.07391 0.95249 1.98342 1.50935 1.74790 1.76619 1.24107 0.90697 0.97790 0.94604 1.84214 1.40737 1.58805 1.20510 0.92982 0.95548 0.94431 0.87974 0.94798 0.92513 0.77228 0.81493 0.76835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.51 37.16 0.32 -2.73 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.58 2.24 -69.08 -0.15 6.42 16 4 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 5 C -0.54 -13.85 8.73 -34.44 -0.30 -14.15 16 6 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.11 11.29 55.43 0.63 -23.48 16 9 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 10 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 N -0.69 -14.23 5.02 -56.25 -0.28 -14.52 16 14 C 0.58 11.62 6.35 -12.86 -0.08 11.54 16 15 O -0.52 -11.85 14.00 5.19 0.07 -11.77 16 16 C -0.04 -0.64 7.13 -36.79 -0.26 -0.90 16 17 C -0.13 -1.90 10.62 -39.37 -0.42 -2.32 16 18 C -0.14 -1.72 6.71 -39.84 -0.27 -1.98 16 19 Cl -0.04 -0.37 29.32 -51.86 -1.52 -1.89 16 20 C 0.00 -0.01 12.06 29.65 0.36 0.35 16 21 O -0.15 -2.06 10.40 4.89 0.05 -2.01 16 22 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.04 0.80 5.65 -51.93 -0.29 0.50 16 25 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 28 H 0.39 7.28 8.29 -40.82 -0.34 6.95 16 29 H 0.17 2.35 8.06 -52.48 -0.42 1.92 16 30 H 0.22 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 277.73 15.07 4.19 4.19 Total: -1.00 -28.38 277.73 -5.91 -34.29 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -2.97 Total: 5.29 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -1.05 Total: -5.29 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.34 Total: -38.00 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.12 Total: -13.79 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.52 Total: -1.89 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.38 -5.91 -34.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260078412.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.412 kcal (2) G-P(sol) polarization free energy of solvation -28.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds