Wall clock time and date at job start Mon Mar 30 2020 06:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47576 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47046 * 119.99929 * 9 7 5 12 12 H 1.48498 * 109.47240 * 239.99731 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21696 * 120.00229 * 0.02562 * 14 13 3 16 16 C 1.46657 * 120.00079 * 179.97438 * 14 13 3 17 17 C 1.36554 * 125.97896 * 179.97438 * 16 14 13 18 18 C 1.40423 * 106.70932 * 179.97438 * 17 16 14 19 19 Cl 1.73606 * 126.44828 * 180.02562 * 18 17 16 20 20 C 1.35196 * 107.09951 * 0.02562 * 18 17 16 21 21 O 1.33983 * 108.74976 * 359.72818 * 20 18 17 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 26 26 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 27 27 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 28 28 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 29 29 H 1.08005 * 126.64118 * 0.02575 * 17 16 14 30 30 H 1.07997 * 125.62259 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5988 1.5443 0.1931 11 1 6.4000 1.6156 2.6091 12 1 6.4962 -0.5190 1.4625 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3419 2.6326 -0.4308 16 6 0.0473 3.3206 -2.6198 17 6 -1.1488 3.9304 -2.8692 18 6 -1.0865 4.4189 -4.1843 19 17 -2.3362 5.2835 -5.0237 20 6 0.1299 4.0891 -4.6736 21 8 0.8119 3.4323 -3.7256 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 3.8293 -0.0605 2.9501 28 1 2.2718 2.1232 -1.9978 29 1 -1.9812 4.0204 -2.1868 30 1 0.4935 4.3207 -5.6638 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260078412.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:27 Heat of formation + Delta-G solvation = -53.955260 kcal Electronic energy + Delta-G solvation = -16766.379096 eV Core-core repulsion = 13781.460284 eV Total energy + Delta-G solvation = -2984.918812 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.85701 -40.59515 -37.72405 -37.06039 -34.44932 -33.88987 -32.98150 -30.90902 -28.91497 -25.46205 -24.21995 -22.89741 -21.91221 -21.22636 -19.96884 -18.27372 -17.60271 -17.32550 -17.11964 -16.20168 -16.06057 -15.43059 -14.91492 -14.63306 -14.37291 -14.25113 -13.91086 -13.52493 -13.39416 -13.18814 -12.90435 -12.70854 -12.18621 -12.09697 -11.98838 -11.62134 -11.18310 -11.06998 -10.80451 -10.55549 -9.91369 -9.62170 -8.17011 -6.34277 -0.05964 0.93591 1.04651 1.45271 1.46688 1.57852 1.63047 2.15323 2.35532 2.57934 3.13041 3.64127 3.75270 4.14445 4.33032 4.48726 4.55897 4.72186 4.77775 4.93622 5.04556 5.23528 5.40049 5.44763 5.55259 5.59873 5.77483 5.89101 6.13514 6.70633 6.80187 7.22403 7.40175 8.88694 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.038364 B = 0.004681 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.677093 B = 5980.670738 C = 6468.525545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.122 4.122 3 C 0.276 3.724 4 H 0.007 0.993 5 C -0.550 4.550 6 H 0.071 0.929 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.971 3.029 10 H -0.262 1.262 11 H -0.284 1.284 12 H -0.278 1.278 13 N -0.690 5.690 14 C 0.584 3.416 15 O -0.560 6.560 16 C -0.074 4.074 17 C -0.118 4.118 18 C -0.158 4.158 19 Cl -0.018 7.018 20 C 0.037 3.963 21 O -0.152 6.152 22 H 0.030 0.970 23 H 0.048 0.952 24 H 0.040 0.960 25 H 0.076 0.924 26 H 0.042 0.958 27 H 0.266 0.734 28 H 0.406 0.594 29 H 0.165 0.835 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.491 6.561 -15.541 17.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.161 4.161 3 C 0.173 3.827 4 H 0.025 0.975 5 C -0.588 4.588 6 H 0.089 0.911 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.795 3.205 10 H -0.186 1.186 11 H -0.210 1.210 12 H -0.204 1.204 13 N -0.337 5.337 14 C 0.371 3.629 15 O -0.442 6.442 16 C -0.126 4.126 17 C -0.139 4.139 18 C -0.186 4.186 19 Cl 0.010 6.990 20 C -0.034 4.034 21 O -0.047 6.047 22 H 0.049 0.951 23 H 0.067 0.933 24 H 0.059 0.941 25 H 0.095 0.905 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.241 0.759 29 H 0.183 0.817 30 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -5.793 6.371 -14.757 17.086 hybrid contribution 0.644 0.095 0.187 0.678 sum -5.149 6.466 -14.570 16.751 Atomic orbital electron populations 1.21707 0.96897 0.99483 1.00293 1.21802 0.93834 0.98807 1.01628 1.18547 0.94068 0.89430 0.80670 0.97495 1.21565 0.91157 1.39231 1.06877 0.91089 1.25730 1.03295 0.94239 0.94922 1.70039 1.37014 1.38187 1.09823 0.85316 0.79090 0.77859 0.78189 1.18578 1.20961 1.20384 1.46252 1.14607 1.54632 1.18200 1.16854 0.82774 0.78633 0.84683 1.90845 1.52668 1.61699 1.38968 1.21842 0.92820 1.09513 0.88433 1.21848 0.97840 0.97970 0.96244 1.21074 0.94476 1.08481 0.94569 1.98353 1.50311 1.74356 1.75940 1.25124 0.89495 0.93796 0.94943 1.84203 1.40811 1.59350 1.20291 0.95092 0.93266 0.94071 0.90529 0.93940 0.92477 0.75904 0.81722 0.71895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.62 8.51 71.98 0.61 -5.01 16 2 C -0.12 -5.92 5.45 30.59 0.17 -5.75 16 3 C 0.28 13.98 2.24 44.24 0.10 14.08 16 4 H 0.01 0.43 7.58 -2.38 -0.02 0.41 16 5 C -0.55 -28.76 8.73 25.60 0.22 -28.54 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 7 C 0.02 0.98 5.29 84.66 0.45 1.43 16 8 N -0.91 -51.21 11.29 21.45 0.24 -50.97 16 9 Si 0.97 41.46 29.54 68.60 2.03 43.49 16 10 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 13 N -0.69 -28.95 5.02 -450.08 -2.26 -31.21 16 14 C 0.58 23.76 6.35 86.44 0.55 24.31 16 15 O -0.56 -26.44 14.00 -4.34 -0.06 -26.50 16 16 C -0.07 -2.35 7.13 24.08 0.17 -2.18 16 17 C -0.12 -3.29 10.62 22.41 0.24 -3.05 16 18 C -0.16 -3.40 6.71 22.10 0.15 -3.25 16 19 Cl -0.02 -0.33 29.32 -2.72 -0.08 -0.41 16 20 C 0.04 0.66 12.06 67.12 0.81 1.47 16 21 O -0.15 -3.86 10.40 -5.41 -0.06 -3.91 16 22 H 0.03 1.47 7.84 -2.39 -0.02 1.45 16 23 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.04 1.77 5.65 -2.38 -0.01 1.76 16 25 H 0.08 4.14 5.95 -2.39 -0.01 4.13 16 26 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.27 14.10 8.31 -92.70 -0.77 13.33 16 28 H 0.41 14.92 8.29 -92.71 -0.77 14.15 16 29 H 0.17 4.58 8.06 -2.91 -0.02 4.56 16 30 H 0.27 1.81 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -63.07 277.73 3.69 -59.39 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 0.41 Total: 16.62 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 3.47 Total: -6.49 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -2.02 Total: -82.18 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.12 Total: -30.41 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -0.08 Total: -0.41 kcal Total: -63.07 3.69 -59.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260078412.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.430 kcal (2) G-P(sol) polarization free energy of solvation -63.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds