Wall clock time and date at job start Mon Mar 30 2020 07:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38268 * 119.96895 * 2 1 4 4 C 1.38276 * 120.01444 * 179.97438 * 3 2 1 5 5 Cl 1.73595 * 120.02579 * 180.02562 * 4 3 2 6 6 C 1.38594 * 119.94803 * 0.02562 * 4 3 2 7 7 F 1.35098 * 120.02735 * 180.02562 * 6 4 3 8 8 C 1.38405 * 119.94057 * 0.02562 * 6 4 3 9 9 C 1.50698 * 120.00435 * 180.02562 * 8 6 4 10 10 H 1.09004 * 109.47437 * 359.97438 * 9 8 6 11 11 C 1.50701 * 109.47344 * 119.99608 * 9 8 6 12 12 H 1.08005 * 120.00046 * 35.03489 * 11 9 8 13 13 C 1.37879 * 120.00109 * 215.04015 * 11 9 8 14 14 N 1.31516 * 119.99801 * 184.78247 * 13 11 9 15 15 Si 1.86800 * 119.99999 * 4.78286 * 13 11 9 16 16 H 1.48501 * 109.46748 * 84.85616 * 15 13 11 17 17 H 1.48503 * 109.46900 * 204.85719 * 15 13 11 18 18 H 1.48494 * 109.47185 * 324.86079 * 15 13 11 19 19 C 1.52998 * 109.47129 * 239.99545 * 9 8 6 20 20 N 1.46898 * 109.47035 * 65.26870 * 19 9 8 21 21 C 1.38227 * 119.97277 * 180.27586 * 2 1 3 22 22 H 1.09000 * 109.47495 * 89.99930 * 1 2 3 23 23 H 1.09005 * 109.46972 * 210.00098 * 1 2 3 24 24 H 1.08999 * 109.47744 * 329.99720 * 1 2 3 25 25 H 1.07995 * 119.98687 * 359.97438 * 3 2 1 26 26 H 0.96998 * 120.00106 * 179.97438 * 14 13 11 27 27 H 1.09001 * 109.47269 * 185.27538 * 19 9 8 28 28 H 1.09004 * 109.46794 * 305.27048 * 19 9 8 29 29 H 1.00899 * 111.00148 * 56.05358 * 20 19 9 30 30 H 1.00901 * 111.00162 * 179.97438 * 20 19 9 31 31 H 1.07998 * 119.97072 * 0.04583 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1976 1.1978 0.0000 4 6 3.5804 1.1989 0.0005 5 17 4.4478 2.7026 0.0012 6 6 4.2732 -0.0014 0.0005 7 9 5.6242 -0.0022 0.0016 8 6 3.5798 -1.1993 -0.0005 9 6 4.3317 -2.5053 0.0000 10 1 5.4036 -2.3074 0.0009 11 6 3.9653 -3.2953 1.2299 12 1 2.9602 -3.2484 1.6224 13 6 4.9133 -4.0780 1.8543 14 7 4.5714 -4.8400 2.8702 15 14 6.6831 -4.0561 1.2571 16 1 7.4047 -2.9225 1.8891 17 1 7.3460 -5.3326 1.6266 18 1 6.7055 -3.8959 -0.2190 19 6 3.9624 -3.3069 -1.2497 20 7 4.4330 -2.5945 -2.4451 21 6 2.1975 -1.1974 -0.0058 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8899 0.5139 25 1 1.6569 2.1327 -0.0004 26 1 5.2382 -5.3909 3.3092 27 1 4.4326 -4.2892 -1.2034 28 1 2.8799 -3.4243 -1.2993 29 1 5.4248 -2.4162 -2.3929 30 1 4.2014 -3.1043 -3.2845 31 1 1.6566 -2.1321 -0.0110 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260095220.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:51 Heat of formation + Delta-G solvation = -62.344634 kcal Electronic energy + Delta-G solvation = -17175.218008 eV Core-core repulsion = 14202.308195 eV Total energy + Delta-G solvation = -2972.909813 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.83702 -40.39055 -37.76646 -36.96484 -34.45595 -33.32750 -32.35789 -29.75702 -27.51060 -25.73773 -24.45138 -22.62740 -21.01571 -19.28836 -18.55289 -17.58216 -16.91760 -16.74582 -16.52080 -15.90306 -15.32629 -15.07500 -14.93247 -14.54739 -14.40857 -14.37670 -13.63305 -13.46753 -13.15285 -13.08019 -12.88675 -12.77822 -12.37808 -12.09786 -11.85370 -11.80302 -11.54464 -11.34593 -10.78153 -9.60132 -9.50348 -9.31225 -8.35929 -6.39691 0.12406 0.32540 1.02958 1.26034 1.31423 1.37039 2.26457 2.60556 2.99741 3.27417 3.78867 3.87675 3.95929 4.20658 4.29337 4.31781 4.63578 4.66374 4.85528 4.93883 4.97997 5.03576 5.06698 5.25372 5.31611 5.46622 5.56511 5.65166 5.92355 6.19881 6.29485 6.62910 6.72981 7.25483 8.79480 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.019871 B = 0.008352 C = 0.007320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.737770 B = 3351.538001 C = 3824.110417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.078 4.078 3 C -0.103 4.103 4 C -0.071 4.071 5 Cl -0.059 7.059 6 C 0.064 3.936 7 F -0.147 7.147 8 C -0.048 4.048 9 C 0.048 3.952 10 H 0.032 0.968 11 C -0.506 4.506 12 H 0.051 0.949 13 C 0.024 3.976 14 N -0.936 5.936 15 Si 0.927 3.073 16 H -0.276 1.276 17 H -0.283 1.283 18 H -0.249 1.249 19 C 0.080 3.920 20 N -0.849 5.849 21 C -0.092 4.092 22 H 0.089 0.911 23 H 0.070 0.930 24 H 0.087 0.913 25 H 0.167 0.833 26 H 0.267 0.733 27 H 0.013 0.987 28 H 0.071 0.929 29 H 0.335 0.665 30 H 0.347 0.653 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.124 10.739 -9.111 14.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.078 4.078 3 C -0.121 4.121 4 C -0.098 4.098 5 Cl -0.030 7.030 6 C 0.044 3.956 7 F -0.126 7.126 8 C -0.049 4.049 9 C 0.029 3.971 10 H 0.051 0.949 11 C -0.544 4.544 12 H 0.069 0.931 13 C -0.174 4.174 14 N -0.576 5.576 15 Si 0.752 3.248 16 H -0.202 1.202 17 H -0.209 1.209 18 H -0.173 1.173 19 C -0.051 4.051 20 N -0.379 5.379 21 C -0.110 4.110 22 H 0.108 0.892 23 H 0.089 0.911 24 H 0.106 0.894 25 H 0.184 0.816 26 H 0.077 0.923 27 H 0.031 0.969 28 H 0.089 0.911 29 H 0.146 0.854 30 H 0.160 0.840 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.435 11.313 -8.748 15.299 hybrid contribution 2.152 -1.191 0.159 2.464 sum -3.284 10.122 -8.589 13.675 Atomic orbital electron populations 1.20829 0.87579 1.04064 1.03801 1.20225 0.98339 0.91213 0.98033 1.20966 0.89838 0.99973 1.01345 1.21004 0.93881 0.85348 1.09610 1.98334 1.77037 1.30497 1.97111 1.17502 0.76816 0.93509 1.07805 1.91404 1.29590 1.97272 1.94341 1.20066 0.95207 0.93487 0.96137 1.18180 0.95100 0.89723 0.94095 0.94945 1.21058 0.98018 1.25478 1.09893 0.93053 1.25738 1.02396 0.94487 0.94821 1.69995 1.35831 1.27860 1.23867 0.86048 0.81023 0.77493 0.80280 1.20208 1.20862 1.17283 1.21939 0.99986 0.93877 0.89308 1.58811 1.21185 1.53364 1.04545 1.20939 0.92211 0.98943 0.98879 0.89235 0.91124 0.89378 0.81557 0.92336 0.96852 0.91092 0.85372 0.84006 0.85164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.06 10.01 71.23 0.71 -1.35 16 2 C -0.08 -2.20 5.88 -19.86 -0.12 -2.32 16 3 C -0.10 -2.85 9.48 22.29 0.21 -2.64 16 4 C -0.07 -2.38 6.33 22.36 0.14 -2.24 16 5 Cl -0.06 -1.74 28.62 -2.72 -0.08 -1.81 16 6 C 0.06 2.55 7.22 22.39 0.16 2.71 16 7 F -0.15 -6.31 15.77 44.97 0.71 -5.60 16 8 C -0.05 -1.98 4.51 -19.83 -0.09 -2.07 16 9 C 0.05 2.21 1.73 -12.29 -0.02 2.19 16 10 H 0.03 1.56 4.28 -2.39 -0.01 1.55 16 11 C -0.51 -27.53 8.64 25.60 0.22 -27.30 16 12 H 0.05 3.02 7.66 -2.91 -0.02 3.00 16 13 C 0.02 1.37 5.47 84.65 0.46 1.84 16 14 N -0.94 -56.62 13.96 21.45 0.30 -56.32 16 15 Si 0.93 44.18 26.99 68.60 1.85 46.04 16 16 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 17 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 18 H -0.25 -10.97 6.82 99.48 0.68 -10.29 16 19 C 0.08 3.14 6.05 86.30 0.52 3.67 16 20 N -0.85 -27.80 9.35 -186.72 -1.75 -29.54 16 21 C -0.09 -3.28 8.20 22.27 0.18 -3.09 16 22 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.07 1.39 8.09 -2.38 -0.02 1.38 16 24 H 0.09 1.33 8.08 -2.39 -0.02 1.31 16 25 H 0.17 3.39 8.06 -2.91 -0.02 3.36 16 26 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 27 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.07 2.70 7.21 -2.39 -0.02 2.68 16 29 H 0.33 10.92 8.99 -89.70 -0.81 10.11 16 30 H 0.35 9.15 9.08 -89.69 -0.81 8.33 16 31 H 0.13 4.64 7.47 -2.91 -0.02 4.62 16 Total: -1.00 -63.36 282.74 2.95 -60.41 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -0.47 Total: 17.43 kcal Atomic # 6 Polarization: -32.99 SS G_CDS: 2.39 Total: -30.60 kcal Atomic # 7 Polarization: -84.41 SS G_CDS: -1.45 Total: -85.86 kcal Atomic # 9 Polarization: -6.31 SS G_CDS: 0.71 Total: -5.60 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.85 Total: 46.04 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -0.08 Total: -1.81 kcal Total: -63.36 2.95 -60.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260095220.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.936 kcal (2) G-P(sol) polarization free energy of solvation -63.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds