Wall clock time and date at job start Mon Mar 30 2020 07:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38250 * 119.97685 * 2 1 4 4 C 1.38185 * 120.03515 * 180.02562 * 3 2 1 5 5 C 1.38490 * 119.99919 * 359.72319 * 4 3 2 6 6 F 1.35104 * 120.02121 * 180.27411 * 5 4 3 7 7 C 1.38415 * 119.96307 * 0.57516 * 5 4 3 8 8 C 1.50699 * 120.01904 * 179.70160 * 7 5 4 9 9 H 1.09001 * 109.46940 * 194.72778 * 8 7 5 10 10 N 1.46901 * 109.47208 * 314.72456 * 8 7 5 11 11 C 1.53001 * 109.47405 * 74.72601 * 8 7 5 12 12 C 1.50694 * 109.47168 * 174.99864 * 11 8 7 13 13 H 1.08000 * 120.00563 * 359.97438 * 12 11 8 14 14 C 1.37885 * 119.99902 * 179.97438 * 12 11 8 15 15 N 1.31518 * 119.99792 * 179.72330 * 14 12 11 16 16 Si 1.86795 * 120.00009 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47088 * 89.99795 * 16 14 12 18 18 H 1.48495 * 109.47293 * 209.99997 * 16 14 12 19 19 H 1.48507 * 109.47015 * 329.99955 * 16 14 12 20 20 C 1.38335 * 119.96144 * 359.42508 * 7 5 4 21 21 Cl 1.73601 * 120.00165 * 180.29867 * 20 7 5 22 22 H 1.09003 * 109.47593 * 269.97861 * 1 2 3 23 23 H 1.09005 * 109.47430 * 29.97998 * 1 2 3 24 24 H 1.09004 * 109.46985 * 149.97633 * 1 2 3 25 25 H 1.07992 * 119.98303 * 0.02562 * 3 2 1 26 26 H 1.07998 * 120.00416 * 179.97438 * 4 3 2 27 27 H 1.00896 * 111.00217 * 60.00192 * 10 8 7 28 28 H 1.00901 * 111.00032 * 183.96147 * 10 8 7 29 29 H 1.08998 * 109.46837 * 54.99885 * 11 8 7 30 30 H 1.09002 * 109.46926 * 294.99689 * 11 8 7 31 31 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1976 0.0000 4 6 3.5796 1.1990 -0.0005 5 6 4.2732 0.0003 0.0047 6 9 5.6243 0.0012 0.0098 7 6 3.5816 -1.1987 -0.0015 8 6 4.3352 -2.5037 -0.0026 9 1 3.6571 -3.3145 -0.2689 10 7 5.4278 -2.4375 -0.9823 11 6 4.9141 -2.7596 1.3904 12 6 5.5618 -4.1198 1.4230 13 1 5.5605 -4.7401 0.5389 14 6 6.1564 -4.5726 2.5818 15 7 6.7169 -5.7620 2.6118 16 14 6.1582 -3.5003 4.1113 17 1 4.9439 -3.7856 4.9172 18 1 7.3689 -3.7930 4.9197 19 1 6.1630 -2.0697 3.7128 20 6 2.1983 -1.1983 -0.0010 21 17 1.3298 -2.7015 -0.0010 22 1 -0.3634 -0.0004 1.0277 23 1 -0.3634 0.8902 -0.5135 24 1 -0.3633 -0.8898 -0.5142 25 1 1.6571 2.1324 0.0004 26 1 4.1187 2.1348 -0.0010 27 1 6.0706 -1.6930 -0.7573 28 1 5.9082 -3.3223 -1.0486 29 1 4.1136 -2.7205 2.1292 30 1 5.6583 -1.9971 1.6202 31 1 7.1355 -6.0803 3.4269 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260109822.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:14 Heat of formation + Delta-G solvation = -59.141884 kcal Electronic energy + Delta-G solvation = -17096.372993 eV Core-core repulsion = 14123.602062 eV Total energy + Delta-G solvation = -2972.770932 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.03432 -40.55779 -37.45025 -37.42475 -34.64741 -33.16664 -31.66184 -30.55279 -27.55303 -26.33346 -23.81408 -23.13952 -21.17997 -19.23729 -18.61003 -18.08341 -16.86996 -16.64605 -16.24402 -15.72041 -15.54750 -15.31930 -15.03625 -14.83544 -14.65507 -14.24791 -13.95878 -13.33387 -13.23068 -12.96063 -12.88870 -12.71138 -12.25854 -12.20103 -12.05614 -11.93767 -11.69375 -11.19414 -10.85195 -9.93517 -9.53456 -9.42575 -8.36176 -6.40119 -0.00411 0.07845 1.08658 1.26916 1.28443 1.39698 2.27879 2.40943 2.97914 3.25551 3.48604 3.75346 3.85824 4.04161 4.16715 4.33581 4.49405 4.65541 4.70408 4.84299 4.87479 4.98476 5.01076 5.11114 5.24805 5.33108 5.37990 5.52711 5.78434 6.15215 6.24510 6.58512 6.65464 7.24407 8.79498 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.022320 B = 0.007653 C = 0.006894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.179581 B = 3657.756475 C = 4060.392631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.084 4.084 3 C -0.078 4.078 4 C -0.137 4.137 5 C 0.084 3.916 6 F -0.140 7.140 7 C -0.108 4.108 8 C 0.137 3.863 9 H 0.082 0.918 10 N -0.839 5.839 11 C -0.025 4.025 12 C -0.524 4.524 13 H 0.044 0.956 14 C 0.015 3.985 15 N -0.941 5.941 16 Si 0.939 3.061 17 H -0.267 1.267 18 H -0.279 1.279 19 H -0.258 1.258 20 C -0.029 4.029 21 Cl -0.060 7.060 22 H 0.085 0.915 23 H 0.101 0.899 24 H 0.067 0.933 25 H 0.186 0.814 26 H 0.169 0.831 27 H 0.339 0.661 28 H 0.345 0.655 29 H 0.011 0.989 30 H 0.013 0.987 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.584 17.342 -4.550 21.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.085 4.085 3 C -0.096 4.096 4 C -0.156 4.156 5 C 0.064 3.936 6 F -0.119 7.119 7 C -0.110 4.110 8 C 0.025 3.975 9 H 0.100 0.900 10 N -0.371 5.371 11 C -0.064 4.064 12 C -0.562 4.562 13 H 0.062 0.938 14 C -0.183 4.183 15 N -0.581 5.581 16 Si 0.763 3.237 17 H -0.192 1.192 18 H -0.204 1.204 19 H -0.182 1.182 20 C -0.057 4.057 21 Cl -0.030 7.030 22 H 0.104 0.896 23 H 0.120 0.880 24 H 0.086 0.914 25 H 0.203 0.797 26 H 0.186 0.814 27 H 0.155 0.845 28 H 0.158 0.842 29 H 0.029 0.971 30 H 0.031 0.969 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.083 17.227 -4.987 22.199 hybrid contribution 1.432 -0.917 1.585 2.325 sum -11.650 16.310 -3.402 20.330 Atomic orbital electron populations 1.20938 0.87625 1.04654 1.03929 1.20218 0.98660 0.90387 0.99244 1.21270 0.92334 0.98482 0.97521 1.21568 0.95815 0.96678 1.01494 1.17650 0.76796 0.94282 1.04853 1.91334 1.29647 1.96864 1.94022 1.19918 0.93374 0.95315 1.02380 1.20193 0.93157 0.92830 0.91289 0.90003 1.59313 1.16431 1.11132 1.50200 1.20137 0.95525 0.95695 0.95066 1.21221 1.35711 1.01066 0.98243 0.93783 1.25831 0.94376 0.96065 1.02042 1.70036 1.38916 1.19758 1.29371 0.85818 0.78227 0.80108 0.79503 1.19182 1.20438 1.18183 1.20626 0.90496 0.88316 1.06233 1.98352 1.75450 1.32493 1.96749 0.89606 0.88021 0.91431 0.79706 0.81350 0.84507 0.84218 0.97079 0.96895 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.78 9.61 71.23 0.68 -1.09 16 2 C -0.08 -1.88 5.88 -19.84 -0.12 -2.00 16 3 C -0.08 -1.41 9.70 22.26 0.22 -1.19 16 4 C -0.14 -3.07 10.03 22.32 0.22 -2.84 16 5 C 0.08 2.70 7.01 22.37 0.16 2.86 16 6 F -0.14 -4.92 13.92 44.97 0.63 -4.30 16 7 C -0.11 -3.88 4.95 -19.80 -0.10 -3.98 16 8 C 0.14 5.88 2.70 44.17 0.12 6.00 16 9 H 0.08 3.68 6.37 -2.39 -0.02 3.67 16 10 N -0.84 -34.76 9.08 -171.80 -1.56 -36.32 16 11 C -0.03 -1.25 3.61 29.85 0.11 -1.14 16 12 C -0.52 -30.36 9.10 25.60 0.23 -30.13 16 13 H 0.04 2.76 7.39 -2.91 -0.02 2.74 16 14 C 0.01 0.88 5.47 84.66 0.46 1.34 16 15 N -0.94 -58.95 13.96 21.45 0.30 -58.65 16 16 Si 0.94 45.60 27.47 68.60 1.88 47.48 16 17 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 19 H -0.26 -12.04 6.54 99.48 0.65 -11.39 16 20 C -0.03 -0.91 6.31 22.32 0.14 -0.77 16 21 Cl -0.06 -1.87 25.41 -2.72 -0.07 -1.94 16 22 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.10 0.96 8.09 -2.38 -0.02 0.94 16 24 H 0.07 1.17 6.90 -2.39 -0.02 1.15 16 25 H 0.19 1.59 8.06 -2.91 -0.02 1.56 16 26 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 27 H 0.34 13.63 6.15 -89.70 -0.55 13.08 16 28 H 0.34 15.08 7.90 -89.69 -0.71 14.37 16 29 H 0.01 0.55 7.57 -2.39 -0.02 0.53 16 30 H 0.01 0.65 6.77 -2.39 -0.02 0.63 16 31 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -68.06 274.67 3.17 -64.89 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: -0.14 Total: 21.79 kcal Atomic # 6 Polarization: -35.08 SS G_CDS: 2.13 Total: -32.95 kcal Atomic # 7 Polarization: -93.71 SS G_CDS: -1.26 Total: -94.97 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.63 Total: -4.30 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.88 Total: 47.48 kcal Atomic # 17 Polarization: -1.87 SS G_CDS: -0.07 Total: -1.94 kcal Total: -68.06 3.17 -64.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260109822.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.745 kcal (2) G-P(sol) polarization free energy of solvation -68.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds