Wall clock time and date at job start Mon Mar 30 2020 07:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38382 * 119.98318 * 2 1 4 4 Cl 1.73601 * 120.00056 * 0.02562 * 3 2 1 5 5 C 1.38287 * 119.99820 * 180.32077 * 3 2 1 6 6 C 1.38461 * 119.96439 * 359.70114 * 5 3 2 7 7 F 1.35101 * 120.02117 * 180.02562 * 6 5 3 8 8 C 1.38448 * 119.95915 * 0.02562 * 6 5 3 9 9 C 1.38200 * 119.97741 * 179.75179 * 2 1 3 10 10 C 1.50700 * 119.98278 * 359.97424 * 9 2 1 11 11 H 1.09001 * 109.47087 * 39.73131 * 10 9 2 12 12 N 1.46905 * 109.47121 * 159.72935 * 10 9 2 13 13 C 1.52998 * 109.47064 * 279.72853 * 10 9 2 14 14 C 1.50708 * 109.47046 * 174.99898 * 13 10 9 15 15 H 1.07997 * 120.00065 * 0.02562 * 14 13 10 16 16 C 1.37877 * 119.99780 * 180.02562 * 14 13 10 17 17 N 1.31513 * 120.00466 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99669 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47740 * 89.99758 * 18 16 14 20 20 H 1.48507 * 109.46792 * 209.99843 * 18 16 14 21 21 H 1.48502 * 109.47143 * 329.99301 * 18 16 14 22 22 H 1.09005 * 109.47138 * 270.25313 * 1 2 3 23 23 H 1.09001 * 109.46911 * 30.25023 * 1 2 3 24 24 H 1.08994 * 109.47286 * 150.25293 * 1 2 3 25 25 H 1.08006 * 120.02181 * 179.72443 * 5 3 2 26 26 H 1.08001 * 120.00255 * 179.97438 * 8 6 5 27 27 H 1.00901 * 110.99869 * 60.00289 * 12 10 9 28 28 H 1.00896 * 110.99543 * 183.95412 * 12 10 9 29 29 H 1.08995 * 109.47368 * 294.99520 * 13 10 9 30 30 H 1.09001 * 109.47446 * 54.99927 * 13 10 9 31 31 H 0.96993 * 120.00255 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1986 1.1986 0.0000 4 17 1.3302 2.7018 0.0007 5 6 3.5814 1.1990 -0.0067 6 6 4.2733 -0.0003 -0.0072 7 9 5.6243 -0.0013 -0.0132 8 6 3.5798 -1.1986 -0.0014 9 6 2.1976 -1.1971 0.0052 10 6 1.4432 -2.5017 0.0114 11 1 0.5768 -2.4235 -0.6455 12 7 2.3226 -3.5782 -0.4639 13 6 0.9774 -2.8146 1.4348 14 6 0.1196 -4.0537 1.4216 15 1 -0.0737 -4.5668 0.4912 16 6 -0.4185 -4.5321 2.5974 17 7 -0.1828 -3.9076 3.7306 18 14 -1.4812 -6.0683 2.5812 19 1 -0.6243 -7.2652 2.7765 20 1 -2.4803 -5.9906 3.6772 21 1 -2.1841 -6.1702 1.2770 22 1 -0.3634 0.0045 1.0277 23 1 -0.3633 0.8878 -0.5177 24 1 -0.3633 -0.8922 -0.5099 25 1 4.1216 2.1343 -0.0112 26 1 4.1188 -2.1345 -0.0022 27 1 3.1337 -3.6707 0.1290 28 1 1.8216 -4.4515 -0.5302 29 1 1.8453 -2.9805 2.0729 30 1 0.3980 -1.9757 1.8203 31 1 -0.5616 -4.2440 4.5577 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260124677.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:41 Heat of formation + Delta-G solvation = -60.749023 kcal Electronic energy + Delta-G solvation = -16763.316258 eV Core-core repulsion = 13790.475636 eV Total energy + Delta-G solvation = -2972.840622 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.068 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.95924 -40.83105 -37.84314 -36.75914 -34.52469 -33.56030 -31.38878 -29.89735 -27.71653 -26.50635 -24.08230 -22.77154 -21.39178 -19.02265 -18.17906 -17.92458 -16.74386 -16.62594 -16.52281 -16.15822 -15.59756 -15.25707 -15.04333 -14.53044 -14.38956 -14.15793 -13.69196 -13.37738 -13.10954 -13.05098 -12.75153 -12.68281 -12.27914 -12.24156 -11.98038 -11.88612 -11.77830 -11.15576 -10.59358 -9.89469 -9.59136 -9.32838 -8.20158 -6.31398 -0.02200 0.05641 0.97750 1.41554 1.42970 1.52843 2.35822 2.42579 3.14052 3.18219 3.52978 3.81149 3.86114 3.98069 4.10628 4.32678 4.64237 4.68292 4.71736 4.78836 4.83717 4.91578 5.07638 5.23006 5.38214 5.43294 5.61210 5.73150 5.77977 6.16194 6.35804 6.67538 6.84893 7.38667 8.90770 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.024211 B = 0.005916 C = 0.005154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.236832 B = 4731.981703 C = 5431.877521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.088 4.088 3 C -0.014 4.014 4 Cl -0.047 7.047 5 C -0.149 4.149 6 C 0.096 3.904 7 F -0.137 7.137 8 C -0.139 4.139 9 C -0.035 4.035 10 C 0.139 3.861 11 H 0.088 0.912 12 N -0.831 5.831 13 C 0.012 3.988 14 C -0.533 4.533 15 H 0.068 0.932 16 C 0.006 3.994 17 N -0.930 5.930 18 Si 0.960 3.040 19 H -0.275 1.275 20 H -0.289 1.289 21 H -0.261 1.261 22 H 0.068 0.932 23 H 0.087 0.913 24 H 0.074 0.926 25 H 0.165 0.835 26 H 0.148 0.852 27 H 0.335 0.665 28 H 0.349 0.651 29 H -0.012 1.012 30 H 0.002 0.998 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.774 9.189 -8.296 13.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.089 4.089 3 C -0.041 4.041 4 Cl -0.018 7.018 5 C -0.168 4.168 6 C 0.077 3.923 7 F -0.115 7.115 8 C -0.158 4.158 9 C -0.036 4.036 10 C 0.027 3.973 11 H 0.106 0.894 12 N -0.360 5.360 13 C -0.027 4.027 14 C -0.571 4.571 15 H 0.086 0.914 16 C -0.193 4.193 17 N -0.570 5.570 18 Si 0.785 3.215 19 H -0.201 1.201 20 H -0.215 1.215 21 H -0.185 1.185 22 H 0.086 0.914 23 H 0.105 0.895 24 H 0.093 0.907 25 H 0.182 0.818 26 H 0.165 0.835 27 H 0.147 0.853 28 H 0.163 0.837 29 H 0.006 0.994 30 H 0.020 0.980 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.777 9.752 -8.800 13.977 hybrid contribution -0.502 -1.100 1.527 1.948 sum 4.275 8.651 -7.274 12.084 Atomic orbital electron populations 1.20896 0.89410 1.03972 1.02941 1.19785 0.97827 0.90785 1.00538 1.20401 0.91697 0.87167 1.04837 1.98349 1.76365 1.30302 1.96757 1.21014 0.92572 0.98576 1.04659 1.17410 0.76918 0.94018 1.03967 1.91492 1.28574 1.97379 1.94079 1.21147 0.94340 0.97994 1.02301 1.19735 0.93004 0.94824 0.96069 1.20312 0.93732 0.87305 0.95954 0.89400 1.59302 1.10914 1.09905 1.55893 1.19642 0.95045 0.95973 0.92017 1.21531 1.30744 1.11001 0.93826 0.91427 1.25871 0.97828 1.00259 0.95325 1.70098 1.46169 1.41651 0.99080 0.85524 0.78477 0.79471 0.78024 1.20115 1.21490 1.18539 0.91351 0.89466 0.90677 0.81769 0.83483 0.85297 0.83693 0.99384 0.97971 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.50 8.54 71.24 0.61 -2.89 16 2 C -0.09 -2.81 5.88 -19.84 -0.12 -2.92 16 3 C -0.01 -0.40 6.31 22.32 0.14 -0.26 16 4 Cl -0.05 -1.13 27.30 -2.72 -0.07 -1.20 16 5 C -0.15 -3.94 9.81 22.33 0.22 -3.72 16 6 C 0.10 2.81 7.30 22.37 0.16 2.97 16 7 F -0.14 -3.85 17.27 44.97 0.78 -3.08 16 8 C -0.14 -4.41 9.23 22.32 0.21 -4.21 16 9 C -0.04 -1.22 5.08 -19.88 -0.10 -1.32 16 10 C 0.14 5.24 2.43 44.17 0.11 5.35 16 11 H 0.09 3.32 6.39 -2.39 -0.02 3.31 16 12 N -0.83 -28.36 8.67 -171.79 -1.49 -29.85 16 13 C 0.01 0.57 4.55 29.85 0.14 0.70 16 14 C -0.53 -27.37 8.55 25.60 0.22 -27.15 16 15 H 0.07 3.27 7.14 -2.91 -0.02 3.25 16 16 C 0.01 0.30 5.46 84.65 0.46 0.76 16 17 N -0.93 -54.11 13.29 21.45 0.28 -53.83 16 18 Si 0.96 42.01 29.54 68.60 2.03 44.04 16 19 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 20 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 21 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 22 H 0.07 2.25 7.78 -2.38 -0.02 2.24 16 23 H 0.09 2.21 6.91 -2.39 -0.02 2.19 16 24 H 0.07 2.31 6.11 -2.39 -0.01 2.30 16 25 H 0.16 3.45 8.06 -2.91 -0.02 3.42 16 26 H 0.15 4.42 6.24 -2.91 -0.02 4.40 16 27 H 0.33 11.01 7.29 -89.69 -0.65 10.35 16 28 H 0.35 12.05 7.90 -89.70 -0.71 11.34 16 29 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 30 H 0.00 0.10 7.12 -2.39 -0.02 0.08 16 31 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -57.27 277.93 3.39 -53.88 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: -0.18 Total: 22.73 kcal Atomic # 6 Polarization: -34.73 SS G_CDS: 2.04 Total: -32.69 kcal Atomic # 7 Polarization: -82.47 SS G_CDS: -1.20 Total: -83.68 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.78 Total: -3.08 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.07 Total: -1.20 kcal Total: -57.27 3.39 -53.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260124677.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.873 kcal (2) G-P(sol) polarization free energy of solvation -57.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds