Wall clock time and date at job start Mon Mar 30 2020 07:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38462 * 120.01902 * 2 1 4 4 F 1.35106 * 120.01580 * 359.97438 * 3 2 1 5 5 C 1.38444 * 119.96341 * 180.02562 * 3 2 1 6 6 C 1.38226 * 119.99801 * 359.97438 * 5 3 2 7 7 C 1.50704 * 119.98155 * 180.02562 * 6 5 3 8 8 H 1.09004 * 109.46441 * 339.99876 * 7 6 5 9 9 N 1.46902 * 109.47225 * 220.00467 * 7 6 5 10 10 C 1.52995 * 109.47261 * 100.00102 * 7 6 5 11 11 C 1.50702 * 109.47100 * 185.00498 * 10 7 6 12 12 H 1.08005 * 120.00026 * 359.97438 * 11 10 7 13 13 C 1.37875 * 120.00008 * 180.02562 * 11 10 7 14 14 N 1.31511 * 119.99909 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99884 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47018 * 59.99980 * 15 13 11 17 17 H 1.48504 * 109.47241 * 179.97438 * 15 13 11 18 18 H 1.48490 * 109.47576 * 299.99986 * 15 13 11 19 19 C 1.38207 * 120.04121 * 0.02585 * 6 5 3 20 20 C 1.38289 * 120.01705 * 179.72712 * 2 1 3 21 21 Cl 1.73594 * 120.00452 * 359.97438 * 20 2 1 22 22 H 1.09002 * 109.47152 * 89.99905 * 1 2 3 23 23 H 1.09001 * 109.46980 * 330.00006 * 1 2 3 24 24 H 1.09004 * 109.47113 * 209.99987 * 1 2 3 25 25 H 1.07996 * 120.00297 * 179.97438 * 5 3 2 26 26 H 1.00901 * 111.00077 * 176.04114 * 9 7 6 27 27 H 1.00900 * 110.99757 * 299.99642 * 9 7 6 28 28 H 1.09001 * 109.46821 * 304.99740 * 10 7 6 29 29 H 1.08996 * 109.46985 * 65.00520 * 10 7 6 30 30 H 0.97002 * 119.99874 * 180.02562 * 14 13 11 31 31 H 1.07994 * 119.97954 * 179.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1989 0.0000 4 9 1.5249 2.3693 -0.0005 5 6 3.5842 1.1975 -0.0005 6 6 4.2741 -0.0002 -0.0005 7 6 5.7811 -0.0013 -0.0005 8 1 6.1450 0.9643 -0.3521 9 7 6.2701 -1.0625 -0.8909 10 6 6.2910 -0.2521 1.4200 11 6 7.7930 -0.1314 1.4432 12 1 8.3302 0.1007 0.5355 13 6 8.4814 -0.3181 2.6231 14 7 7.8273 -0.6011 3.7284 15 14 10.3432 -0.1692 2.6518 16 1 10.7373 1.1955 2.2186 17 1 10.8382 -0.4125 4.0306 18 1 10.9343 -1.1713 1.7292 19 6 3.5827 -1.1969 -0.0005 20 6 2.1988 -1.1974 0.0057 21 17 1.3314 -2.7011 0.0135 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 0.8900 0.5138 24 1 -0.3633 -0.8900 0.5139 25 1 4.1251 2.1323 -0.0010 26 1 7.2767 -1.0426 -0.9585 27 1 5.9460 -1.9681 -0.5860 28 1 5.8569 0.4837 2.0970 29 1 6.0020 -1.2538 1.7381 30 1 8.3116 -0.7322 4.5586 31 1 4.1228 -2.1321 -0.0010 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260160123.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:17 Heat of formation + Delta-G solvation = -49.129978 kcal Electronic energy + Delta-G solvation = -16532.045622 eV Core-core repulsion = 13559.708839 eV Total energy + Delta-G solvation = -2972.336783 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.068 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.81482 -39.39040 -36.65036 -35.51692 -32.82835 -31.78901 -30.26568 -28.16207 -27.06007 -24.03756 -22.77884 -21.81963 -19.92745 -17.30506 -16.68964 -16.35854 -15.74569 -15.62677 -14.87075 -14.68227 -14.16814 -13.71419 -13.68921 -13.25504 -12.82350 -12.53420 -12.36457 -12.25027 -11.92417 -11.52600 -11.32398 -11.15854 -10.99721 -10.84874 -10.62695 -10.36261 -9.97797 -9.29417 -8.60750 -8.50620 -8.43840 -7.81865 -6.14606 -4.20153 1.19037 1.27171 2.12103 3.24450 3.30159 3.31518 3.62351 4.31405 4.36353 4.73264 4.85787 4.98769 5.20810 5.43103 5.53348 5.54601 5.57459 5.63739 5.84445 6.02418 6.12312 6.23382 6.30219 6.55674 6.74301 6.92450 7.34979 7.46752 7.77406 7.90281 8.10325 8.21906 8.85855 9.45662 10.95932 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.027305 B = 0.005226 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.214022 B = 5356.882850 C = 5805.279556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.131 4.131 3 C 0.107 3.893 4 F -0.137 7.137 5 C -0.143 4.143 6 C -0.012 4.012 7 C 0.124 3.876 8 H 0.083 0.917 9 N -0.839 5.839 10 C 0.000 4.000 11 C -0.529 4.529 12 H 0.058 0.942 13 C 0.062 3.938 14 N -0.890 5.890 15 Si 0.894 3.106 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.103 4.103 20 C -0.009 4.009 21 Cl -0.066 7.066 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.140 0.860 26 H 0.350 0.650 27 H 0.330 0.670 28 H 0.022 0.978 29 H 0.020 0.980 30 H 0.263 0.737 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.963 -0.483 -7.378 14.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.132 4.132 3 C 0.088 3.912 4 F -0.115 7.115 5 C -0.163 4.163 6 C -0.013 4.013 7 C 0.013 3.987 8 H 0.101 0.899 9 N -0.368 5.368 10 C -0.038 4.038 11 C -0.567 4.567 12 H 0.076 0.924 13 C -0.141 4.141 14 N -0.528 5.528 15 Si 0.722 3.278 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.201 1.201 19 C -0.122 4.122 20 C -0.035 4.035 21 Cl -0.037 7.037 22 H 0.092 0.908 23 H 0.089 0.911 24 H 0.094 0.906 25 H 0.158 0.842 26 H 0.164 0.836 27 H 0.142 0.858 28 H 0.040 0.960 29 H 0.038 0.962 30 H 0.073 0.927 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.454 -0.234 -7.757 14.674 hybrid contribution 1.369 -0.189 1.137 1.789 sum -11.085 -0.423 -6.620 12.918 Atomic orbital electron populations 1.20726 0.89773 1.03553 1.02842 1.19515 0.97175 0.90569 1.05983 1.17189 0.89689 0.80398 1.03924 1.91470 1.80383 1.45666 1.94010 1.21105 0.91759 0.99998 1.03389 1.19963 0.97194 0.91015 0.93088 1.20607 0.86513 0.96239 0.95332 0.89868 1.59265 1.17329 1.06780 1.53464 1.19816 0.96273 0.97719 0.89994 1.21073 0.91476 1.49299 0.94896 0.92428 1.25011 0.98588 0.94882 0.95616 1.69955 1.35855 1.47405 0.99565 0.86621 0.85334 0.78711 0.77137 1.20148 1.21260 1.20129 1.20882 0.91134 0.99559 1.00642 1.20429 0.92064 0.86073 1.04963 1.98343 1.76889 1.31635 1.96861 0.90821 0.91118 0.90613 0.84187 0.83583 0.85833 0.96013 0.96191 0.92724 0.84476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 9.44 36.01 0.34 -0.95 16 2 C -0.13 -1.88 5.89 -104.52 -0.62 -2.50 16 3 C 0.11 1.65 7.24 -39.42 -0.29 1.36 16 4 F -0.14 -2.02 16.48 2.25 0.04 -1.99 16 5 C -0.14 -2.32 9.65 -39.51 -0.38 -2.70 16 6 C -0.01 -0.20 4.95 -104.64 -0.52 -0.72 16 7 C 0.12 2.38 2.99 -68.86 -0.21 2.17 16 8 H 0.08 1.60 8.00 -51.93 -0.42 1.19 16 9 N -0.84 -14.67 9.02 -5.65 -0.05 -14.72 16 10 C 0.00 0.01 4.60 -27.88 -0.13 -0.12 16 11 C -0.53 -13.76 8.55 -34.44 -0.29 -14.05 16 12 H 0.06 1.43 7.15 -52.48 -0.37 1.06 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -25.68 13.29 55.43 0.74 -24.94 16 15 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 19 C -0.10 -1.67 9.08 -39.54 -0.36 -2.03 16 20 C -0.01 -0.13 6.31 -39.51 -0.25 -0.38 16 21 Cl -0.07 -0.86 27.29 -51.86 -1.42 -2.28 16 22 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 23 H 0.07 0.77 7.64 -51.93 -0.40 0.37 16 24 H 0.08 0.81 6.89 -51.93 -0.36 0.46 16 25 H 0.14 2.09 8.04 -52.49 -0.42 1.67 16 26 H 0.35 6.24 7.90 -39.29 -0.31 5.93 16 27 H 0.33 5.50 7.34 -39.29 -0.29 5.21 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.14 2.13 6.66 -52.49 -0.35 1.78 16 LS Contribution 283.45 15.07 4.27 4.27 Total: -1.00 -27.66 283.45 -7.55 -35.21 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -3.32 Total: 7.11 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -2.79 Total: -18.33 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.69 Total: -39.67 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.42 Total: -2.28 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -27.66 -7.55 -35.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260160123.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.917 kcal (2) G-P(sol) polarization free energy of solvation -27.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds