Wall clock time and date at job start Mon Mar 30 2020 07:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38462 * 120.01902 * 2 1 4 4 F 1.35106 * 120.01580 * 359.97438 * 3 2 1 5 5 C 1.38444 * 119.96341 * 180.02562 * 3 2 1 6 6 C 1.38226 * 119.99801 * 359.97438 * 5 3 2 7 7 C 1.50704 * 119.98155 * 180.02562 * 6 5 3 8 8 H 1.09004 * 109.46441 * 339.99876 * 7 6 5 9 9 N 1.46902 * 109.47225 * 220.00467 * 7 6 5 10 10 C 1.52995 * 109.47261 * 100.00102 * 7 6 5 11 11 C 1.50702 * 109.47100 * 185.00498 * 10 7 6 12 12 H 1.08005 * 120.00026 * 359.97438 * 11 10 7 13 13 C 1.37875 * 120.00008 * 180.02562 * 11 10 7 14 14 N 1.31511 * 119.99909 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99884 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47018 * 59.99980 * 15 13 11 17 17 H 1.48504 * 109.47241 * 179.97438 * 15 13 11 18 18 H 1.48490 * 109.47576 * 299.99986 * 15 13 11 19 19 C 1.38207 * 120.04121 * 0.02585 * 6 5 3 20 20 C 1.38289 * 120.01705 * 179.72712 * 2 1 3 21 21 Cl 1.73594 * 120.00452 * 359.97438 * 20 2 1 22 22 H 1.09002 * 109.47152 * 89.99905 * 1 2 3 23 23 H 1.09001 * 109.46980 * 330.00006 * 1 2 3 24 24 H 1.09004 * 109.47113 * 209.99987 * 1 2 3 25 25 H 1.07996 * 120.00297 * 179.97438 * 5 3 2 26 26 H 1.00901 * 111.00077 * 176.04114 * 9 7 6 27 27 H 1.00900 * 110.99757 * 299.99642 * 9 7 6 28 28 H 1.09001 * 109.46821 * 304.99740 * 10 7 6 29 29 H 1.08996 * 109.46985 * 65.00520 * 10 7 6 30 30 H 0.97002 * 119.99874 * 180.02562 * 14 13 11 31 31 H 1.07994 * 119.97954 * 179.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1989 0.0000 4 9 1.5249 2.3693 -0.0005 5 6 3.5842 1.1975 -0.0005 6 6 4.2741 -0.0002 -0.0005 7 6 5.7811 -0.0013 -0.0005 8 1 6.1450 0.9643 -0.3521 9 7 6.2701 -1.0625 -0.8909 10 6 6.2910 -0.2521 1.4200 11 6 7.7930 -0.1314 1.4432 12 1 8.3302 0.1007 0.5355 13 6 8.4814 -0.3181 2.6231 14 7 7.8273 -0.6011 3.7284 15 14 10.3432 -0.1692 2.6518 16 1 10.7373 1.1955 2.2186 17 1 10.8382 -0.4125 4.0306 18 1 10.9343 -1.1713 1.7292 19 6 3.5827 -1.1969 -0.0005 20 6 2.1988 -1.1974 0.0057 21 17 1.3314 -2.7011 0.0135 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 0.8900 0.5138 24 1 -0.3633 -0.8900 0.5139 25 1 4.1251 2.1323 -0.0010 26 1 7.2767 -1.0426 -0.9585 27 1 5.9460 -1.9681 -0.5860 28 1 5.8569 0.4837 2.0970 29 1 6.0020 -1.2538 1.7381 30 1 8.3116 -0.7322 4.5586 31 1 4.1228 -2.1321 -0.0010 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260160123.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:16 Heat of formation + Delta-G solvation = -64.787967 kcal Electronic energy + Delta-G solvation = -16532.724603 eV Core-core repulsion = 13559.708839 eV Total energy + Delta-G solvation = -2973.015764 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.068 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.00178 -40.65239 -37.88751 -36.92409 -34.67541 -33.12656 -31.50221 -29.93084 -28.37910 -25.72779 -24.01738 -23.30794 -21.37454 -18.92487 -17.98115 -17.92291 -17.06090 -16.83553 -16.58739 -16.15809 -15.43304 -15.16570 -14.82892 -14.48609 -14.43168 -14.19134 -13.64672 -13.55419 -13.37460 -12.86226 -12.81513 -12.61997 -12.37023 -12.34377 -12.18046 -11.84601 -11.76786 -11.21904 -10.60535 -9.79505 -9.71268 -9.32834 -8.21771 -6.33799 -0.03798 0.03447 0.97178 1.42011 1.43303 1.51023 2.34755 2.41686 3.10571 3.13089 3.55701 3.71311 3.75396 4.11341 4.19459 4.32550 4.46687 4.57935 4.69040 4.76980 4.85489 4.93452 5.09497 5.12530 5.30278 5.37192 5.60552 5.69713 5.74521 6.14030 6.34523 6.68924 6.82345 7.36564 8.89185 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.027305 B = 0.005226 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.214022 B = 5356.882850 C = 5805.279556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.124 4.124 3 C 0.102 3.898 4 F -0.133 7.133 5 C -0.149 4.149 6 C -0.033 4.033 7 C 0.140 3.860 8 H 0.081 0.919 9 N -0.828 5.828 10 C 0.010 3.990 11 C -0.537 4.537 12 H 0.069 0.931 13 C 0.004 3.996 14 N -0.931 5.931 15 Si 0.963 3.037 16 H -0.269 1.269 17 H -0.290 1.290 18 H -0.264 1.264 19 C -0.108 4.108 20 C -0.014 4.014 21 Cl -0.047 7.047 22 H 0.091 0.909 23 H 0.078 0.922 24 H 0.084 0.916 25 H 0.147 0.853 26 H 0.349 0.651 27 H 0.335 0.665 28 H -0.011 1.011 29 H -0.004 1.004 30 H 0.262 0.738 31 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.399 -0.566 -8.447 15.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.125 4.125 3 C 0.082 3.918 4 F -0.111 7.111 5 C -0.168 4.168 6 C -0.034 4.034 7 C 0.028 3.972 8 H 0.099 0.901 9 N -0.357 5.357 10 C -0.029 4.029 11 C -0.575 4.575 12 H 0.087 0.913 13 C -0.194 4.194 14 N -0.571 5.571 15 Si 0.788 3.212 16 H -0.194 1.194 17 H -0.215 1.215 18 H -0.189 1.189 19 C -0.127 4.127 20 C -0.041 4.041 21 Cl -0.017 7.017 22 H 0.109 0.891 23 H 0.097 0.903 24 H 0.102 0.898 25 H 0.164 0.836 26 H 0.163 0.837 27 H 0.148 0.852 28 H 0.008 0.992 29 H 0.015 0.985 30 H 0.071 0.929 31 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.897 -0.321 -8.851 15.646 hybrid contribution 1.398 -0.188 1.454 2.026 sum -11.499 -0.508 -7.397 13.682 Atomic orbital electron populations 1.20837 0.87478 1.04391 1.04196 1.19863 0.98843 0.89919 1.03915 1.17206 0.89431 0.80932 1.04195 1.91478 1.80170 1.45503 1.93999 1.21210 0.92481 0.99936 1.03185 1.19777 0.96083 0.92052 0.95476 1.20285 0.88034 0.96553 0.92357 0.90054 1.59260 1.17182 1.06777 1.52464 1.19684 0.95488 0.95252 0.92489 1.21516 0.92695 1.48062 0.95188 0.91324 1.25916 1.03469 0.94696 0.95334 1.70099 1.37742 1.49070 1.00218 0.85533 0.79550 0.79106 0.77052 1.19384 1.21531 1.18871 1.20949 0.91983 0.99220 1.00583 1.20474 0.91777 0.87203 1.04662 1.98348 1.76282 1.30370 1.96738 0.89069 0.90334 0.89752 0.83562 0.83718 0.85221 0.99227 0.98526 0.92877 0.84332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.29 9.44 71.24 0.67 -1.61 16 2 C -0.12 -3.34 5.89 -19.80 -0.12 -3.46 16 3 C 0.10 3.00 7.24 22.37 0.16 3.16 16 4 F -0.13 -3.73 16.48 44.97 0.74 -2.99 16 5 C -0.15 -4.76 9.65 22.32 0.22 -4.55 16 6 C -0.03 -1.14 4.95 -19.87 -0.10 -1.24 16 7 C 0.14 5.36 2.99 44.17 0.13 5.49 16 8 H 0.08 3.14 8.00 -2.38 -0.02 3.12 16 9 N -0.83 -28.52 9.02 -171.80 -1.55 -30.07 16 10 C 0.01 0.47 4.60 29.85 0.14 0.60 16 11 C -0.54 -28.05 8.55 25.60 0.22 -27.83 16 12 H 0.07 3.36 7.15 -2.91 -0.02 3.34 16 13 C 0.00 0.23 5.46 84.65 0.46 0.70 16 14 N -0.93 -54.87 13.29 21.45 0.28 -54.59 16 15 Si 0.96 42.35 29.54 68.60 2.03 44.37 16 16 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 17 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 18 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 19 C -0.11 -3.45 9.08 22.30 0.20 -3.25 16 20 C -0.01 -0.41 6.31 22.32 0.14 -0.26 16 21 Cl -0.05 -1.12 27.29 -2.72 -0.07 -1.19 16 22 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.08 1.50 7.64 -2.39 -0.02 1.48 16 24 H 0.08 1.58 6.89 -2.38 -0.02 1.56 16 25 H 0.15 4.35 8.04 -2.91 -0.02 4.33 16 26 H 0.35 12.17 7.90 -89.69 -0.71 11.46 16 27 H 0.34 11.04 7.34 -89.69 -0.66 10.38 16 28 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 29 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 30 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 31 H 0.14 4.27 6.66 -2.91 -0.02 4.25 16 Total: -1.00 -58.59 283.45 3.36 -55.23 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: -0.19 Total: 21.48 kcal Atomic # 6 Polarization: -34.37 SS G_CDS: 2.13 Total: -32.24 kcal Atomic # 7 Polarization: -83.39 SS G_CDS: -1.26 Total: -84.66 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.74 Total: -2.99 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.07 Total: -1.19 kcal Total: -58.59 3.36 -55.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260160123.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.561 kcal (2) G-P(sol) polarization free energy of solvation -58.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds