Wall clock time and date at job start Mon Mar 30 2020 07:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38452 * 120.01857 * 2 1 4 4 F 1.35103 * 120.02365 * 359.97438 * 3 2 1 5 5 C 1.38456 * 119.96006 * 179.76749 * 3 2 1 6 6 C 1.38222 * 120.00113 * 0.48202 * 5 3 2 7 7 C 1.50697 * 119.98278 * 179.74343 * 6 5 3 8 8 H 1.08995 * 109.47458 * 200.02369 * 7 6 5 9 9 N 1.46899 * 109.47056 * 320.03121 * 7 6 5 10 10 C 1.53001 * 109.46585 * 80.02790 * 7 6 5 11 11 C 1.50698 * 109.47013 * 175.00285 * 10 7 6 12 12 H 1.08010 * 120.00184 * 359.97438 * 11 10 7 13 13 C 1.37877 * 120.00171 * 179.97438 * 11 10 7 14 14 N 1.31509 * 120.00210 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 119.99899 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46801 * 90.00496 * 15 13 11 17 17 H 1.48504 * 109.46772 * 210.00077 * 15 13 11 18 18 H 1.48498 * 109.47137 * 330.00198 * 15 13 11 19 19 C 1.38206 * 120.03636 * 359.77668 * 6 5 3 20 20 C 1.38292 * 120.01991 * 180.27358 * 2 1 3 21 21 Cl 1.73600 * 119.99750 * 0.02872 * 20 2 1 22 22 H 1.09002 * 109.47152 * 269.72447 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.72548 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.72528 * 1 2 3 25 25 H 1.08003 * 119.99662 * 180.23074 * 5 3 2 26 26 H 1.00895 * 111.00607 * 59.99351 * 9 7 6 27 27 H 1.00902 * 110.99880 * 183.94999 * 9 7 6 28 28 H 1.08998 * 109.47163 * 294.99408 * 10 7 6 29 29 H 1.08992 * 109.47535 * 55.00016 * 10 7 6 30 30 H 0.96998 * 120.00230 * 179.97438 * 14 13 11 31 31 H 1.07996 * 119.98261 * 179.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1988 0.0000 4 9 1.5250 2.3693 -0.0005 5 6 3.5842 1.1974 0.0049 6 6 4.2742 -0.0003 -0.0003 7 6 5.7811 -0.0013 -0.0009 8 1 6.1437 -0.9656 -0.3569 9 7 6.2712 1.0635 -0.8863 10 6 6.2917 0.2422 1.4207 11 6 7.7935 0.1196 1.4430 12 1 8.3302 -0.1097 0.5341 13 6 8.4825 0.2999 2.6235 14 7 7.8291 0.5785 3.7303 15 14 10.3441 0.1471 2.6512 16 1 10.9537 1.4742 2.3818 17 1 10.7812 -0.3367 3.9854 18 1 10.7772 -0.8174 1.6085 19 6 3.5827 -1.1970 -0.0058 20 6 2.1989 -1.1974 -0.0057 21 17 1.3314 -2.7011 -0.0137 22 1 -0.3633 -0.0049 1.0277 23 1 -0.3633 -0.8875 -0.5181 24 1 -0.3633 0.8925 -0.5096 25 1 4.1251 2.1322 0.0086 26 1 5.9484 1.9680 -0.5772 27 1 7.2777 1.0426 -0.9543 28 1 6.0042 1.2428 1.7436 29 1 5.8568 -0.4959 2.0944 30 1 8.3138 0.7051 4.5609 31 1 4.1227 -2.1322 -0.0102 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260160128.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:20 Heat of formation + Delta-G solvation = -49.210616 kcal Electronic energy + Delta-G solvation = -16532.068955 eV Core-core repulsion = 13559.728675 eV Total energy + Delta-G solvation = -2972.340280 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.068 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.79846 -39.38670 -36.69461 -35.50550 -32.83083 -31.76479 -30.28185 -28.17351 -27.06975 -24.05477 -22.78660 -21.74709 -19.96381 -17.41325 -16.63593 -16.31765 -15.67010 -15.62636 -14.82777 -14.68649 -14.33698 -13.72732 -13.63277 -13.25864 -12.81165 -12.47730 -12.36860 -12.27463 -11.97487 -11.53301 -11.31193 -11.18024 -10.98642 -10.82755 -10.62094 -10.39258 -9.98195 -9.28652 -8.57448 -8.54749 -8.44111 -7.81907 -6.14962 -4.20407 1.19789 1.26329 2.09976 3.22899 3.30442 3.32707 3.62272 4.32744 4.37716 4.71756 4.85232 5.02101 5.20277 5.40158 5.43689 5.55093 5.56710 5.69432 5.88214 6.08174 6.14306 6.19149 6.27050 6.55268 6.72916 6.93691 7.34931 7.46482 7.77236 7.89995 8.09926 8.21660 8.85846 9.45509 10.95624 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.027294 B = 0.005181 C = 0.004772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.622082 B = 5403.084841 C = 5866.012012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.131 4.131 3 C 0.107 3.893 4 F -0.137 7.137 5 C -0.132 4.132 6 C -0.011 4.011 7 C 0.124 3.876 8 H 0.084 0.916 9 N -0.839 5.839 10 C 0.000 4.000 11 C -0.529 4.529 12 H 0.058 0.942 13 C 0.061 3.939 14 N -0.890 5.890 15 Si 0.894 3.106 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.114 4.114 20 C -0.008 4.008 21 Cl -0.067 7.067 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.139 0.861 26 H 0.330 0.670 27 H 0.350 0.650 28 H 0.019 0.981 29 H 0.022 0.978 30 H 0.262 0.738 31 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.970 -1.738 -7.395 14.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.132 4.132 3 C 0.088 3.912 4 F -0.115 7.115 5 C -0.151 4.151 6 C -0.012 4.012 7 C 0.013 3.987 8 H 0.102 0.898 9 N -0.369 5.369 10 C -0.038 4.038 11 C -0.567 4.567 12 H 0.076 0.924 13 C -0.141 4.141 14 N -0.528 5.528 15 Si 0.721 3.279 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.133 4.133 20 C -0.035 4.035 21 Cl -0.038 7.038 22 H 0.093 0.907 23 H 0.093 0.907 24 H 0.089 0.911 25 H 0.157 0.843 26 H 0.141 0.859 27 H 0.164 0.836 28 H 0.037 0.963 29 H 0.040 0.960 30 H 0.072 0.928 31 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.461 -2.173 -7.784 14.852 hybrid contribution 1.366 0.387 1.165 1.837 sum -11.094 -1.786 -6.619 13.042 Atomic orbital electron populations 1.20727 0.89773 1.03422 1.02978 1.19513 0.97175 0.90568 1.05969 1.17235 0.89754 0.80407 1.03811 1.91471 1.80392 1.45658 1.93986 1.21019 0.91511 1.00193 1.02415 1.19960 0.97184 0.91009 0.93085 1.20606 0.86513 0.96200 0.95366 0.89801 1.59263 1.17347 1.06648 1.53599 1.19822 0.96300 0.97719 0.90007 1.21111 0.91482 1.49256 0.94813 0.92368 1.25014 0.98595 0.94899 0.95610 1.69962 1.35752 1.47610 0.99464 0.86566 0.85397 0.78399 0.77495 1.20598 1.21173 1.19740 1.20971 0.91378 0.99368 1.01615 1.20382 0.91982 0.86039 1.05106 1.98342 1.76901 1.31660 1.96881 0.90728 0.90669 0.91143 0.84346 0.85868 0.83583 0.96259 0.95956 0.92782 0.84332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 9.44 36.01 0.34 -0.95 16 2 C -0.13 -1.88 5.89 -104.52 -0.62 -2.49 16 3 C 0.11 1.67 7.24 -39.42 -0.29 1.38 16 4 F -0.14 -2.06 16.47 2.25 0.04 -2.02 16 5 C -0.13 -2.18 9.27 -39.51 -0.37 -2.54 16 6 C -0.01 -0.20 4.95 -104.64 -0.52 -0.71 16 7 C 0.12 2.38 2.99 -68.87 -0.21 2.17 16 8 H 0.08 1.61 8.00 -51.93 -0.42 1.20 16 9 N -0.84 -14.71 9.02 -5.66 -0.05 -14.76 16 10 C 0.00 0.00 4.60 -27.88 -0.13 -0.13 16 11 C -0.53 -13.73 8.55 -34.44 -0.29 -14.03 16 12 H 0.06 1.45 7.15 -52.48 -0.38 1.07 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 15 Si 0.89 20.68 29.54 -169.99 -5.02 15.65 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 19 C -0.11 -1.81 9.45 -39.54 -0.37 -2.18 16 20 C -0.01 -0.12 6.31 -39.51 -0.25 -0.37 16 21 Cl -0.07 -0.85 27.29 -51.86 -1.42 -2.26 16 22 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.07 0.78 6.90 -51.93 -0.36 0.43 16 24 H 0.07 0.75 7.63 -51.93 -0.40 0.36 16 25 H 0.14 2.18 6.66 -52.48 -0.35 1.83 16 26 H 0.33 5.51 7.34 -39.29 -0.29 5.23 16 27 H 0.35 6.24 7.90 -39.29 -0.31 5.93 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.14 2.04 8.03 -52.49 -0.42 1.62 16 LS Contribution 283.46 15.07 4.27 4.27 Total: -1.00 -27.71 283.46 -7.56 -35.26 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -3.32 Total: 7.11 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -2.79 Total: -18.30 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 0.69 Total: -39.71 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.42 Total: -2.26 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -27.71 -7.56 -35.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260160128.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.948 kcal (2) G-P(sol) polarization free energy of solvation -27.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds