Wall clock time and date at job start Mon Mar 30 2020 07:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38452 * 120.01857 * 2 1 4 4 F 1.35103 * 120.02365 * 359.97438 * 3 2 1 5 5 C 1.38456 * 119.96006 * 179.76749 * 3 2 1 6 6 C 1.38222 * 120.00113 * 0.48202 * 5 3 2 7 7 C 1.50697 * 119.98278 * 179.74343 * 6 5 3 8 8 H 1.08995 * 109.47458 * 200.02369 * 7 6 5 9 9 N 1.46899 * 109.47056 * 320.03121 * 7 6 5 10 10 C 1.53001 * 109.46585 * 80.02790 * 7 6 5 11 11 C 1.50698 * 109.47013 * 175.00285 * 10 7 6 12 12 H 1.08010 * 120.00184 * 359.97438 * 11 10 7 13 13 C 1.37877 * 120.00171 * 179.97438 * 11 10 7 14 14 N 1.31509 * 120.00210 * 0.02562 * 13 11 10 15 15 Si 1.86808 * 119.99899 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46801 * 90.00496 * 15 13 11 17 17 H 1.48504 * 109.46772 * 210.00077 * 15 13 11 18 18 H 1.48498 * 109.47137 * 330.00198 * 15 13 11 19 19 C 1.38206 * 120.03636 * 359.77668 * 6 5 3 20 20 C 1.38292 * 120.01991 * 180.27358 * 2 1 3 21 21 Cl 1.73600 * 119.99750 * 0.02872 * 20 2 1 22 22 H 1.09002 * 109.47152 * 269.72447 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.72548 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.72528 * 1 2 3 25 25 H 1.08003 * 119.99662 * 180.23074 * 5 3 2 26 26 H 1.00895 * 111.00607 * 59.99351 * 9 7 6 27 27 H 1.00902 * 110.99880 * 183.94999 * 9 7 6 28 28 H 1.08998 * 109.47163 * 294.99408 * 10 7 6 29 29 H 1.08992 * 109.47535 * 55.00016 * 10 7 6 30 30 H 0.96998 * 120.00230 * 179.97438 * 14 13 11 31 31 H 1.07996 * 119.98261 * 179.97438 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1988 0.0000 4 9 1.5250 2.3693 -0.0005 5 6 3.5842 1.1974 0.0049 6 6 4.2742 -0.0003 -0.0003 7 6 5.7811 -0.0013 -0.0009 8 1 6.1437 -0.9656 -0.3569 9 7 6.2712 1.0635 -0.8863 10 6 6.2917 0.2422 1.4207 11 6 7.7935 0.1196 1.4430 12 1 8.3302 -0.1097 0.5341 13 6 8.4825 0.2999 2.6235 14 7 7.8291 0.5785 3.7303 15 14 10.3441 0.1471 2.6512 16 1 10.9537 1.4742 2.3818 17 1 10.7812 -0.3367 3.9854 18 1 10.7772 -0.8174 1.6085 19 6 3.5827 -1.1970 -0.0058 20 6 2.1989 -1.1974 -0.0057 21 17 1.3314 -2.7011 -0.0137 22 1 -0.3633 -0.0049 1.0277 23 1 -0.3633 -0.8875 -0.5181 24 1 -0.3633 0.8925 -0.5096 25 1 4.1251 2.1322 0.0086 26 1 5.9484 1.9680 -0.5772 27 1 7.2777 1.0426 -0.9543 28 1 6.0042 1.2428 1.7436 29 1 5.8568 -0.4959 2.0944 30 1 8.3138 0.7051 4.5609 31 1 4.1227 -2.1322 -0.0102 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260160128.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:19 Heat of formation + Delta-G solvation = -64.920338 kcal Electronic energy + Delta-G solvation = -16532.750180 eV Core-core repulsion = 13559.728675 eV Total energy + Delta-G solvation = -2973.021504 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.068 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.00232 -40.64674 -37.92546 -36.90292 -34.67987 -33.09994 -31.52344 -29.93838 -28.39183 -25.73555 -24.07809 -23.18481 -21.42241 -18.98642 -18.04490 -17.86181 -16.90961 -16.83782 -16.59027 -16.17757 -15.63157 -15.08285 -14.82294 -14.51438 -14.41962 -14.17626 -13.63220 -13.54298 -13.39203 -12.91012 -12.80925 -12.60851 -12.37345 -12.31236 -12.16183 -11.88058 -11.75905 -11.21484 -10.61593 -9.77133 -9.74574 -9.32847 -8.22169 -6.34103 -0.03073 0.02682 0.96287 1.41132 1.42136 1.52610 2.34640 2.41460 3.11974 3.14992 3.51787 3.69899 3.81029 4.04440 4.18588 4.27348 4.56077 4.63946 4.68512 4.74665 4.84063 4.91801 5.09875 5.11910 5.30045 5.37185 5.58120 5.71125 5.74486 6.13783 6.33875 6.67878 6.82317 7.36356 8.89021 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.027294 B = 0.005181 C = 0.004772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.622082 B = 5403.084841 C = 5866.012012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.123 4.123 3 C 0.100 3.900 4 F -0.134 7.134 5 C -0.140 4.140 6 C -0.032 4.032 7 C 0.139 3.861 8 H 0.084 0.916 9 N -0.829 5.829 10 C 0.009 3.991 11 C -0.535 4.535 12 H 0.069 0.931 13 C 0.004 3.996 14 N -0.932 5.932 15 Si 0.963 3.037 16 H -0.273 1.273 17 H -0.288 1.288 18 H -0.261 1.261 19 C -0.117 4.117 20 C -0.012 4.012 21 Cl -0.045 7.045 22 H 0.085 0.915 23 H 0.087 0.913 24 H 0.079 0.921 25 H 0.139 0.861 26 H 0.335 0.665 27 H 0.349 0.651 28 H -0.006 1.006 29 H -0.009 1.009 30 H 0.262 0.738 31 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.407 -2.251 -8.416 15.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.125 4.125 3 C 0.080 3.920 4 F -0.113 7.113 5 C -0.159 4.159 6 C -0.033 4.033 7 C 0.028 3.972 8 H 0.102 0.898 9 N -0.358 5.358 10 C -0.030 4.030 11 C -0.573 4.573 12 H 0.087 0.913 13 C -0.195 4.195 14 N -0.572 5.572 15 Si 0.788 3.212 16 H -0.199 1.199 17 H -0.214 1.214 18 H -0.185 1.185 19 C -0.137 4.137 20 C -0.039 4.039 21 Cl -0.016 7.016 22 H 0.104 0.896 23 H 0.106 0.894 24 H 0.098 0.902 25 H 0.157 0.843 26 H 0.147 0.853 27 H 0.163 0.837 28 H 0.013 0.987 29 H 0.009 0.991 30 H 0.071 0.929 31 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -12.906 -2.685 -8.831 15.867 hybrid contribution 1.396 0.523 1.471 2.094 sum -11.510 -2.162 -7.360 13.832 Atomic orbital electron populations 1.20836 0.87487 1.04567 1.04013 1.19858 0.98835 0.89915 1.03916 1.17267 0.89477 0.80988 1.04247 1.91474 1.80198 1.45591 1.94007 1.21073 0.92260 0.99994 1.02579 1.19776 0.96071 0.92036 0.95447 1.20295 0.88029 0.96554 0.92354 0.89826 1.59261 1.17207 1.06642 1.52642 1.19691 0.95527 0.95196 0.92553 1.21545 0.92687 1.48008 0.95084 0.91293 1.25920 1.03474 0.94724 0.95335 1.70103 1.37669 1.49268 1.00140 0.85475 0.79582 0.78701 0.77446 1.19902 1.21441 1.18513 1.21094 0.92200 0.99168 1.01202 1.20429 0.91735 0.87158 1.04610 1.98349 1.76265 1.30240 1.96737 0.89599 0.89401 0.90176 0.84333 0.85320 0.83708 0.98749 0.99052 0.92887 0.83588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.29 9.44 71.24 0.67 -1.62 16 2 C -0.12 -3.34 5.89 -19.80 -0.12 -3.46 16 3 C 0.10 2.99 7.24 22.37 0.16 3.16 16 4 F -0.13 -3.88 16.47 44.97 0.74 -3.14 16 5 C -0.14 -4.59 9.27 22.32 0.21 -4.38 16 6 C -0.03 -1.12 4.95 -19.88 -0.10 -1.21 16 7 C 0.14 5.35 2.99 44.17 0.13 5.49 16 8 H 0.08 3.20 8.00 -2.39 -0.02 3.18 16 9 N -0.83 -28.72 9.02 -171.81 -1.55 -30.27 16 10 C 0.01 0.44 4.60 29.85 0.14 0.58 16 11 C -0.54 -27.97 8.55 25.60 0.22 -27.75 16 12 H 0.07 3.38 7.15 -2.91 -0.02 3.36 16 13 C 0.00 0.21 5.46 84.66 0.46 0.67 16 14 N -0.93 -54.93 13.29 21.45 0.28 -54.65 16 15 Si 0.96 42.38 29.54 68.60 2.03 44.41 16 16 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 17 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 18 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 19 C -0.12 -3.65 9.45 22.30 0.21 -3.44 16 20 C -0.01 -0.35 6.31 22.32 0.14 -0.20 16 21 Cl -0.05 -1.05 27.29 -2.72 -0.07 -1.12 16 22 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.09 1.57 6.90 -2.39 -0.02 1.55 16 24 H 0.08 1.50 7.63 -2.38 -0.02 1.48 16 25 H 0.14 4.40 6.66 -2.91 -0.02 4.39 16 26 H 0.33 11.16 7.34 -89.70 -0.66 10.50 16 27 H 0.35 12.21 7.90 -89.69 -0.71 11.50 16 28 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 29 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 30 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 31 H 0.15 4.20 8.03 -2.91 -0.02 4.18 16 Total: -1.00 -58.72 283.46 3.36 -55.36 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: -0.19 Total: 21.59 kcal Atomic # 6 Polarization: -34.30 SS G_CDS: 2.13 Total: -32.17 kcal Atomic # 7 Polarization: -83.66 SS G_CDS: -1.26 Total: -84.92 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.74 Total: -3.14 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -0.07 Total: -1.12 kcal Total: -58.72 3.36 -55.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260160128.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.565 kcal (2) G-P(sol) polarization free energy of solvation -58.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds