Wall clock time and date at job start Mon Mar 30 2020 06:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46913 * 2 1 4 4 C 1.50703 * 109.46924 * 240.00292 * 2 1 3 5 5 H 1.08001 * 120.00037 * 239.99256 * 4 2 1 6 6 C 1.37879 * 119.99824 * 59.99897 * 4 2 1 7 7 N 1.31512 * 120.00502 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99575 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47245 * 60.00392 * 8 6 4 10 10 H 1.48504 * 109.46709 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47176 * 299.99915 * 8 6 4 12 12 N 1.46499 * 109.47320 * 120.00272 * 2 1 3 13 13 C 1.34777 * 119.99665 * 300.27951 * 12 2 1 14 14 O 1.21713 * 120.00187 * 359.72121 * 13 12 2 15 15 C 1.46519 * 119.99590 * 179.72452 * 13 12 2 16 16 C 1.36619 * 125.97814 * 179.97438 * 15 13 12 17 17 C 1.40241 * 106.73882 * 179.97438 * 16 15 13 18 18 C 1.35369 * 107.12237 * 359.97438 * 17 16 15 19 19 Cl 1.73594 * 125.63657 * 179.97438 * 18 17 16 20 20 O 1.33959 * 108.72956 * 359.75958 * 18 17 16 21 21 H 1.08998 * 109.47212 * 299.99241 * 1 2 3 22 22 H 1.09000 * 109.47221 * 60.00430 * 1 2 3 23 23 H 1.09006 * 109.47154 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47223 * 179.97438 * 3 2 1 25 25 H 1.08996 * 109.47179 * 300.00478 * 3 2 1 26 26 H 1.09004 * 109.46762 * 59.99989 * 3 2 1 27 27 H 0.96997 * 120.00009 * 180.02562 * 7 6 4 28 28 H 0.97001 * 119.99790 * 119.99664 * 12 2 1 29 29 H 1.08006 * 126.62677 * 359.94764 * 16 15 13 30 30 H 1.08007 * 126.44504 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 1.8279 -2.5197 -4.0084 10 1 1.8278 -0.4190 -5.2205 11 1 3.8074 -1.1188 -4.0079 12 7 2.0184 -0.6906 1.1961 13 6 1.6882 -0.2335 2.4202 14 8 0.9884 0.7561 2.5319 15 6 2.1716 -0.9278 3.6165 16 6 1.9135 -0.5724 4.9101 17 6 2.5685 -1.5077 5.7243 18 6 3.1912 -2.3847 4.9024 19 17 4.1466 -3.7426 5.4093 20 8 2.9444 -2.0344 3.6332 21 1 -0.3633 0.5137 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 3.1299 1.4425 0.0005 25 1 1.6766 1.9563 -0.8899 26 1 1.6766 1.9563 0.8900 27 1 0.7089 1.1615 -3.4844 28 1 2.5761 -1.4793 1.1070 29 1 1.3200 0.2669 5.2416 30 1 2.5744 -1.5255 6.8042 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260204478.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:03 Heat of formation + Delta-G solvation = -38.744431 kcal Electronic energy + Delta-G solvation = -16948.473294 eV Core-core repulsion = 13964.214073 eV Total energy + Delta-G solvation = -2984.259221 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.83961 -40.69794 -38.11206 -37.30793 -34.57453 -34.14138 -32.15478 -30.17861 -27.65449 -27.35149 -24.74913 -23.04625 -22.10953 -20.63580 -19.89769 -18.38765 -17.70026 -17.48448 -17.05756 -16.03906 -15.61115 -15.32339 -14.54103 -14.40589 -14.28679 -14.13281 -13.98640 -13.33000 -13.24203 -13.04895 -12.92258 -12.47881 -12.45873 -12.34922 -12.10031 -11.82443 -11.28235 -11.19083 -10.62411 -10.54651 -9.93184 -9.58099 -8.09863 -6.29162 -0.15627 -0.00970 1.15590 1.47350 1.47691 1.55326 1.96578 2.17111 2.38895 2.63588 3.16199 3.71665 3.86714 4.31257 4.42575 4.66888 4.77696 4.86513 4.96139 5.14285 5.21386 5.22198 5.47649 5.52912 5.55638 5.63944 5.87940 5.93098 6.21708 6.68406 6.88253 7.23209 7.43920 8.91147 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.029621 B = 0.005325 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.044748 B = 5256.463877 C = 6015.748596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.286 3.714 3 C -0.135 4.135 4 C -0.545 4.545 5 H 0.065 0.935 6 C 0.028 3.972 7 N -0.902 5.902 8 Si 0.965 3.035 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.272 1.272 12 N -0.693 5.693 13 C 0.587 3.413 14 O -0.553 6.553 15 C -0.074 4.074 16 C -0.114 4.114 17 C -0.169 4.169 18 C 0.034 3.966 19 Cl 0.049 6.951 20 O -0.169 6.169 21 H 0.033 0.967 22 H 0.071 0.929 23 H 0.023 0.977 24 H 0.023 0.977 25 H 0.071 0.929 26 H 0.032 0.968 27 H 0.265 0.735 28 H 0.402 0.598 29 H 0.181 0.819 30 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.964 -7.103 14.865 17.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.203 3.797 3 C -0.194 4.194 4 C -0.583 4.583 5 H 0.083 0.917 6 C -0.173 4.173 7 N -0.539 5.539 8 Si 0.790 3.210 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.340 5.340 13 C 0.373 3.627 14 O -0.434 6.434 15 C -0.126 4.126 16 C -0.135 4.135 17 C -0.189 4.189 18 C -0.044 4.044 19 Cl 0.078 6.922 20 O -0.067 6.067 21 H 0.052 0.948 22 H 0.090 0.910 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.090 0.910 26 H 0.051 0.949 27 H 0.075 0.925 28 H 0.236 0.764 29 H 0.198 0.802 30 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 4.579 -6.555 14.508 16.566 hybrid contribution 0.548 -0.783 -0.936 1.338 sum 5.127 -7.339 13.572 16.259 Atomic orbital electron populations 1.21948 0.97664 0.98844 1.00950 1.18104 0.91104 0.89736 0.80805 1.21942 0.97972 0.98526 1.00929 1.21337 1.33136 1.13114 0.90676 0.91704 1.25554 0.94757 0.95508 1.01526 1.69940 1.36358 1.23251 1.24360 0.85510 0.78634 0.78551 0.78264 1.19736 1.20963 1.19745 1.46497 1.50814 1.31058 1.05627 1.16888 0.80460 0.83478 0.81910 1.90787 1.39952 1.26680 1.86010 1.22290 1.02661 0.90563 0.97105 1.22221 1.00371 1.01228 0.89632 1.21882 1.00307 0.94170 1.02522 1.23262 1.02346 0.96118 0.82678 1.98445 1.68280 1.39153 1.86340 1.83980 1.55285 1.38186 1.29209 0.94841 0.91030 0.95820 0.95806 0.91023 0.94884 0.92531 0.76381 0.80188 0.77954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.92 8.17 71.98 0.59 -6.33 16 2 C 0.29 14.28 0.78 2.86 0.00 14.29 16 3 C -0.14 -6.90 8.18 71.98 0.59 -6.31 16 4 C -0.54 -28.25 8.18 25.60 0.21 -28.04 16 5 H 0.06 3.23 7.60 -2.91 -0.02 3.21 16 6 C 0.03 1.43 5.15 84.66 0.44 1.87 16 7 N -0.90 -48.85 9.35 21.45 0.20 -48.65 16 8 Si 0.97 41.37 29.54 68.60 2.03 43.40 16 9 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 10 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 12 N -0.69 -29.91 5.09 -430.39 -2.19 -32.11 16 13 C 0.59 24.07 7.20 86.40 0.62 24.69 16 14 O -0.55 -25.48 13.07 -4.39 -0.06 -25.54 16 15 C -0.07 -2.43 7.13 24.05 0.17 -2.25 16 16 C -0.11 -2.95 10.62 22.38 0.24 -2.72 16 17 C -0.17 -3.39 10.84 22.09 0.24 -3.15 16 18 C 0.03 0.80 7.93 67.16 0.53 1.33 16 19 Cl 0.05 0.89 29.30 -2.72 -0.08 0.81 16 20 O -0.17 -5.08 10.40 -6.00 -0.06 -5.14 16 21 H 0.03 1.68 6.15 -2.39 -0.01 1.66 16 22 H 0.07 3.91 6.07 -2.39 -0.01 3.90 16 23 H 0.02 1.14 8.14 -2.38 -0.02 1.12 16 24 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.07 3.92 6.07 -2.39 -0.01 3.90 16 26 H 0.03 1.66 6.17 -2.38 -0.01 1.64 16 27 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 28 H 0.40 15.82 8.07 -92.71 -0.75 15.07 16 29 H 0.18 4.16 8.06 -2.91 -0.02 4.13 16 30 H 0.20 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -59.40 273.09 3.90 -55.51 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.44 Total: 18.34 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: 3.63 Total: -6.62 kcal Atomic # 7 Polarization: -78.76 SS G_CDS: -1.99 Total: -80.75 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.12 Total: -30.68 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Atomic # 17 Polarization: 0.89 SS G_CDS: -0.08 Total: 0.81 kcal Total: -59.40 3.90 -55.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260204478.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.762 kcal (2) G-P(sol) polarization free energy of solvation -59.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds