Wall clock time and date at job start Mon Mar 30 2020 06:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47132 * 119.99654 * 3 2 1 6 6 H 1.48501 * 109.47173 * 239.99775 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 H 1.08991 * 110.37987 * 57.62446 * 9 7 2 11 11 C 1.53751 * 110.42314 * 295.11195 * 9 7 2 12 12 N 1.46537 * 105.18692 * 241.23645 * 11 9 7 13 13 C 1.39578 * 110.08808 * 0.02562 * 12 11 9 14 14 C 1.39671 * 129.32034 * 179.97438 * 13 12 11 15 15 C 1.37824 * 120.28235 * 180.02562 * 14 13 12 16 16 C 1.38306 * 120.23089 * 359.97364 * 15 14 13 17 17 C 1.38225 * 119.83229 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.92427 * 180.02562 * 17 16 15 19 19 F 1.39894 * 109.47105 * 0.06612 * 18 17 16 20 20 F 1.39903 * 109.47276 * 120.06204 * 18 17 16 21 21 F 1.39897 * 109.47370 * 240.06450 * 18 17 16 22 22 C 1.38173 * 120.15586 * 0.07010 * 17 16 15 23 23 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 24 24 H 1.08997 * 110.29896 * 0.16699 * 11 9 7 25 25 H 1.08998 * 110.29504 * 122.31277 * 11 9 7 26 26 H 0.96992 * 124.95663 * 180.02562 * 12 11 9 27 27 H 1.08006 * 119.85938 * 0.02562 * 14 13 12 28 28 H 1.08000 * 119.88925 * 179.97438 * 15 14 13 29 29 H 1.08003 * 120.08405 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6963 1.2126 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0053 9 6 1.2509 -2.4991 -0.0125 10 1 0.5877 -2.5499 -0.8759 11 6 0.4525 -2.6644 1.2911 12 7 0.9935 -3.8713 1.9222 13 6 2.0076 -4.4128 1.1305 14 6 2.7886 -5.5500 1.3484 15 6 3.7501 -5.9187 0.4324 16 6 3.9487 -5.1652 -0.7102 17 6 3.1791 -4.0389 -0.9335 18 6 3.3933 -3.2167 -2.1781 19 9 4.4137 -3.7889 -2.9452 20 9 2.2108 -3.1845 -2.9251 21 9 3.7541 -1.9134 -1.8198 22 6 2.2144 -3.6646 -0.0178 23 1 -0.4850 0.8401 0.0040 24 1 0.6017 -1.8000 1.9381 25 1 -0.6071 -2.7951 1.0715 26 1 0.6911 -4.2400 2.7667 27 1 2.6383 -6.1431 2.2384 28 1 4.3507 -6.7991 0.6074 29 1 4.7026 -5.4565 -1.4266 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260219307.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:56 Heat of formation + Delta-G solvation = -117.290204 kcal Electronic energy + Delta-G solvation = -19746.595315 eV Core-core repulsion = 16219.506203 eV Total energy + Delta-G solvation = -3527.089112 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.072 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.29538 -46.88770 -46.63205 -39.67319 -35.81168 -33.09711 -31.48899 -28.90292 -28.37813 -25.18738 -24.44272 -21.75875 -21.16436 -20.15609 -17.80897 -17.57713 -17.48560 -16.41811 -15.64789 -15.19829 -14.62086 -14.42133 -13.90186 -13.72780 -13.60232 -13.19113 -13.12885 -12.88262 -12.81126 -12.28279 -12.06958 -11.91526 -11.57776 -11.31966 -11.02207 -10.88496 -10.63732 -10.45472 -9.62969 -9.58457 -9.19834 -8.53891 -8.33440 -6.66218 -6.09224 -4.13758 1.66831 2.07981 3.32197 3.35565 3.41156 3.51756 4.13214 4.20275 4.43565 4.55040 4.93137 5.21434 5.32702 5.41936 5.56642 5.68763 5.94603 6.10949 6.23947 6.33939 6.58346 6.78926 6.88830 7.01861 7.15456 7.26756 7.55432 7.79864 7.87527 8.20884 8.51289 8.89689 9.51080 10.98269 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.019452 B = 0.011002 C = 0.008050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.115340 B = 2544.304958 C = 3477.396655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.065 3.935 3 Si 0.894 3.106 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.273 1.273 7 C -0.507 4.507 8 H 0.071 0.929 9 C 0.073 3.927 10 H 0.057 0.943 11 C 0.135 3.865 12 N -0.745 5.745 13 C 0.192 3.808 14 C -0.173 4.173 15 C -0.094 4.094 16 C -0.146 4.146 17 C -0.130 4.130 18 C 0.508 3.492 19 F -0.196 7.196 20 F -0.179 7.179 21 F -0.157 7.157 22 C -0.079 4.079 23 H 0.263 0.737 24 H 0.072 0.928 25 H 0.047 0.953 26 H 0.400 0.600 27 H 0.114 0.886 28 H 0.122 0.878 29 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.289 -8.898 0.767 9.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.213 1.213 5 H -0.202 1.202 6 H -0.199 1.199 7 C -0.545 4.545 8 H 0.089 0.911 9 C 0.054 3.946 10 H 0.074 0.926 11 C 0.012 3.988 12 N -0.375 5.375 13 C 0.087 3.913 14 C -0.197 4.197 15 C -0.113 4.113 16 C -0.167 4.167 17 C -0.132 4.132 18 C 0.454 3.546 19 F -0.177 7.177 20 F -0.160 7.160 21 F -0.138 7.138 22 C -0.084 4.084 23 H 0.073 0.927 24 H 0.090 0.910 25 H 0.065 0.935 26 H 0.235 0.765 27 H 0.132 0.868 28 H 0.139 0.861 29 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.983 -8.574 0.744 9.483 hybrid contribution 0.269 0.913 0.248 0.984 sum 4.252 -7.661 0.992 8.817 Atomic orbital electron populations 1.69936 1.05890 1.27097 1.50135 1.24947 0.94861 0.99207 0.94711 0.86603 0.79624 0.82660 0.78960 1.21308 1.20212 1.19859 1.21148 0.93569 0.88648 1.51126 0.91086 1.18484 0.91432 0.90463 0.94226 0.92568 1.22180 0.96287 0.84443 0.95896 1.45155 1.38366 1.30180 1.23764 1.18339 0.89546 0.92387 0.91057 1.20357 0.99852 0.97939 1.01582 1.20470 0.97801 0.99291 0.93723 1.20519 1.01259 0.95586 0.99342 1.19202 1.01023 0.97980 0.94984 1.18326 0.73400 0.79233 0.83612 1.93077 1.61380 1.85021 1.78250 1.93171 1.47779 1.96531 1.78558 1.93291 1.91502 1.37729 1.91250 1.20333 0.97169 0.97942 0.92954 0.92710 0.91009 0.93477 0.76463 0.86833 0.86051 0.85680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.56 12.63 55.43 0.70 -23.86 15 2 C 0.06 1.74 5.16 -17.82 -0.09 1.65 15 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 15 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 15 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 15 7 C -0.51 -13.49 6.75 -34.44 -0.23 -13.72 15 8 H 0.07 1.93 6.05 -52.49 -0.32 1.61 15 9 C 0.07 1.78 2.55 -92.28 -0.23 1.54 15 10 H 0.06 1.51 8.14 -51.93 -0.42 1.09 15 11 C 0.14 3.00 6.85 -3.63 -0.02 2.98 15 12 N -0.75 -13.84 6.53 -58.12 -0.38 -14.22 15 13 C 0.19 3.73 7.03 -83.66 -0.59 3.14 15 14 C -0.17 -2.80 10.07 -39.20 -0.39 -3.19 15 15 C -0.09 -1.43 10.02 -39.71 -0.40 -1.82 15 16 C -0.15 -2.48 9.44 -39.56 -0.37 -2.86 15 17 C -0.13 -2.63 5.37 -104.65 -0.56 -3.19 15 18 C 0.51 10.53 3.07 36.01 0.11 10.64 15 19 F -0.20 -3.58 15.97 2.25 0.04 -3.54 15 20 F -0.18 -3.88 17.13 2.25 0.04 -3.84 15 21 F -0.16 -3.59 13.78 2.25 0.03 -3.56 15 22 C -0.08 -1.74 5.31 -104.25 -0.55 -2.29 15 23 H 0.26 6.97 8.31 -40.82 -0.34 6.63 15 24 H 0.07 1.72 7.45 -51.93 -0.39 1.34 15 25 H 0.05 1.04 8.14 -51.93 -0.42 0.61 15 26 H 0.40 5.99 8.96 -40.82 -0.37 5.63 15 27 H 0.11 1.50 8.06 -52.48 -0.42 1.08 15 28 H 0.12 1.40 8.06 -52.49 -0.42 0.98 15 29 H 0.13 1.85 7.16 -52.48 -0.38 1.47 15 LS Contribution 258.84 15.07 3.90 3.90 Total: -1.00 -27.85 258.84 -6.31 -34.16 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -2.27 Total: 1.85 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -3.34 Total: -7.13 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.32 Total: -38.08 kcal Atomic # 9 Polarization: -11.05 SS G_CDS: 0.11 Total: -10.94 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -27.85 -6.31 -34.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260219307.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.128 kcal (2) G-P(sol) polarization free energy of solvation -27.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds