Wall clock time and date at job start Mon Mar 30 2020 06:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47132 * 119.99654 * 3 2 1 6 6 H 1.48501 * 109.47173 * 239.99775 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.08002 * 119.99701 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99783 * 0.02562 * 7 2 1 10 10 H 1.08991 * 110.37987 * 57.62446 * 9 7 2 11 11 C 1.53751 * 110.42314 * 295.11195 * 9 7 2 12 12 N 1.46537 * 105.18692 * 241.23645 * 11 9 7 13 13 C 1.39578 * 110.08808 * 0.02562 * 12 11 9 14 14 C 1.39671 * 129.32034 * 179.97438 * 13 12 11 15 15 C 1.37824 * 120.28235 * 180.02562 * 14 13 12 16 16 C 1.38306 * 120.23089 * 359.97364 * 15 14 13 17 17 C 1.38225 * 119.83229 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.92427 * 180.02562 * 17 16 15 19 19 F 1.39894 * 109.47105 * 0.06612 * 18 17 16 20 20 F 1.39903 * 109.47276 * 120.06204 * 18 17 16 21 21 F 1.39897 * 109.47370 * 240.06450 * 18 17 16 22 22 C 1.38173 * 120.15586 * 0.07010 * 17 16 15 23 23 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 24 24 H 1.08997 * 110.29896 * 0.16699 * 11 9 7 25 25 H 1.08998 * 110.29504 * 122.31277 * 11 9 7 26 26 H 0.96992 * 124.95663 * 180.02562 * 12 11 9 27 27 H 1.08006 * 119.85938 * 0.02562 * 14 13 12 28 28 H 1.08000 * 119.88925 * 179.97438 * 15 14 13 29 29 H 1.08003 * 120.08405 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6963 1.2126 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0057 8 1 3.0845 -1.1941 -0.0053 9 6 1.2509 -2.4991 -0.0125 10 1 0.5877 -2.5499 -0.8759 11 6 0.4525 -2.6644 1.2911 12 7 0.9935 -3.8713 1.9222 13 6 2.0076 -4.4128 1.1305 14 6 2.7886 -5.5500 1.3484 15 6 3.7501 -5.9187 0.4324 16 6 3.9487 -5.1652 -0.7102 17 6 3.1791 -4.0389 -0.9335 18 6 3.3933 -3.2167 -2.1781 19 9 4.4137 -3.7889 -2.9452 20 9 2.2108 -3.1845 -2.9251 21 9 3.7541 -1.9134 -1.8198 22 6 2.2144 -3.6646 -0.0178 23 1 -0.4850 0.8401 0.0040 24 1 0.6017 -1.8000 1.9381 25 1 -0.6071 -2.7951 1.0715 26 1 0.6911 -4.2400 2.7667 27 1 2.6383 -6.1431 2.2384 28 1 4.3507 -6.7991 0.6074 29 1 4.7026 -5.4565 -1.4266 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260219307.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:56 Heat of formation + Delta-G solvation = -133.749040 kcal Electronic energy + Delta-G solvation = -19747.309024 eV Core-core repulsion = 16219.506203 eV Total energy + Delta-G solvation = -3527.802821 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 257.072 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.94404 -48.49771 -48.36355 -41.16759 -37.32303 -34.96512 -33.09099 -30.49808 -29.97296 -26.86049 -26.25846 -23.33328 -22.63484 -21.83131 -19.37256 -19.25416 -19.10066 -18.42003 -17.15290 -16.79834 -16.22733 -15.95651 -15.64984 -15.32607 -15.28886 -14.85094 -14.67604 -14.57579 -14.46176 -14.11646 -13.58705 -13.45580 -13.28263 -12.89368 -12.85166 -12.63951 -12.40917 -12.12674 -11.41081 -11.29533 -10.94931 -10.57109 -9.78398 -8.28720 -8.02645 -6.23593 0.24612 0.69992 1.39645 1.42030 1.49191 1.91790 2.42047 2.67348 2.82052 2.97659 3.16260 3.36573 3.67643 4.06614 4.25240 4.31116 4.53476 4.63956 4.74006 4.80340 4.90575 5.21067 5.44054 5.53591 5.56661 5.70740 5.78087 5.82125 6.23659 6.28186 6.81604 7.19840 7.42910 8.92571 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.019452 B = 0.011002 C = 0.008050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.115340 B = 2544.304958 C = 3477.396655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.020 3.980 3 Si 0.945 3.055 4 H -0.281 1.281 5 H -0.270 1.270 6 H -0.277 1.277 7 C -0.512 4.512 8 H 0.060 0.940 9 C 0.070 3.930 10 H 0.015 0.985 11 C 0.151 3.849 12 N -0.737 5.737 13 C 0.176 3.824 14 C -0.156 4.156 15 C -0.077 4.077 16 C -0.142 4.142 17 C -0.146 4.146 18 C 0.504 3.496 19 F -0.180 7.180 20 F -0.191 7.191 21 F -0.176 7.176 22 C -0.125 4.125 23 H 0.263 0.737 24 H 0.048 0.952 25 H 0.040 0.960 26 H 0.418 0.582 27 H 0.153 0.847 28 H 0.173 0.827 29 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.043 -11.137 1.862 12.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.179 4.179 3 Si 0.771 3.229 4 H -0.206 1.206 5 H -0.195 1.195 6 H -0.203 1.203 7 C -0.550 4.550 8 H 0.078 0.922 9 C 0.051 3.949 10 H 0.033 0.967 11 C 0.026 3.974 12 N -0.369 5.369 13 C 0.071 3.929 14 C -0.179 4.179 15 C -0.095 4.095 16 C -0.163 4.163 17 C -0.148 4.148 18 C 0.450 3.550 19 F -0.162 7.162 20 F -0.173 7.173 21 F -0.157 7.157 22 C -0.130 4.130 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.257 0.743 27 H 0.171 0.829 28 H 0.190 0.810 29 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.750 -10.840 1.854 12.410 hybrid contribution -0.188 1.476 -0.146 1.495 sum 5.562 -9.364 1.708 11.025 Atomic orbital electron populations 1.70031 1.06865 1.27564 1.51187 1.25604 0.95597 1.01919 0.94798 0.85804 0.78648 0.79679 0.78805 1.20583 1.19487 1.20264 1.21327 0.93192 0.90055 1.50380 0.92153 1.18252 0.91766 0.91292 0.93605 0.96701 1.21635 0.95664 0.85313 0.94767 1.44835 1.38491 1.29109 1.24497 1.18598 0.90336 0.93555 0.90393 1.20853 0.98081 0.96190 1.02764 1.21074 0.96864 0.99752 0.91824 1.20931 1.00611 0.94141 1.00571 1.19382 1.01849 0.99264 0.94350 1.18547 0.73306 0.78798 0.84307 1.93093 1.60559 1.84566 1.77938 1.93142 1.48642 1.96550 1.78930 1.93240 1.91639 1.39321 1.91484 1.20222 0.98771 0.98426 0.95547 0.92775 0.93367 0.94177 0.74265 0.82894 0.80997 0.83246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.34 12.63 21.45 0.27 -52.07 15 2 C 0.02 1.11 5.16 84.66 0.44 1.55 15 3 Si 0.94 44.48 29.54 68.60 2.03 46.51 15 4 H -0.28 -12.79 7.11 99.48 0.71 -12.08 15 5 H -0.27 -12.30 7.11 99.48 0.71 -11.60 15 6 H -0.28 -13.10 7.11 99.48 0.71 -12.40 15 7 C -0.51 -28.22 6.75 25.60 0.17 -28.05 15 8 H 0.06 3.39 6.05 -2.91 -0.02 3.38 15 9 C 0.07 3.56 2.55 -11.87 -0.03 3.53 15 10 H 0.02 0.87 8.14 -2.39 -0.02 0.85 15 11 C 0.15 6.92 6.85 86.63 0.59 7.52 15 12 N -0.74 -26.75 6.53 -337.78 -2.20 -28.95 15 13 C 0.18 6.50 7.03 38.34 0.27 6.77 15 14 C -0.16 -4.28 10.07 22.52 0.23 -4.06 15 15 C -0.08 -1.89 10.02 22.19 0.22 -1.67 15 16 C -0.14 -4.31 9.44 22.28 0.21 -4.10 15 17 C -0.15 -5.81 5.37 -19.88 -0.11 -5.92 15 18 C 0.50 21.05 3.07 71.24 0.22 21.27 15 19 F -0.18 -6.38 15.97 44.97 0.72 -5.67 15 20 F -0.19 -8.57 17.13 44.97 0.77 -7.80 15 21 F -0.18 -8.27 13.78 44.97 0.62 -7.66 15 22 C -0.12 -5.49 5.31 -19.63 -0.10 -5.59 15 23 H 0.26 14.36 8.31 -92.70 -0.77 13.59 15 24 H 0.05 2.41 7.45 -2.39 -0.02 2.39 15 25 H 0.04 1.85 8.14 -2.39 -0.02 1.83 15 26 H 0.42 11.78 8.96 -92.71 -0.83 10.95 15 27 H 0.15 3.05 8.06 -2.91 -0.02 3.02 15 28 H 0.17 2.61 8.06 -2.91 -0.02 2.58 15 29 H 0.15 3.75 7.16 -2.91 -0.02 3.73 15 Total: -1.00 -62.84 258.84 4.69 -58.16 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: 0.38 Total: 6.24 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: 2.11 Total: -8.76 kcal Atomic # 7 Polarization: -79.08 SS G_CDS: -1.93 Total: -81.02 kcal Atomic # 9 Polarization: -23.23 SS G_CDS: 2.11 Total: -21.13 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -62.84 4.69 -58.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260219307.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.594 kcal (2) G-P(sol) polarization free energy of solvation -62.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds