Wall clock time and date at job start Mon Mar 30 2020 06:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99734 * 2 1 4 4 H 1.48494 * 109.47585 * 270.00148 * 3 2 1 5 5 H 1.48506 * 109.47322 * 30.00263 * 3 2 1 6 6 H 1.48501 * 109.47033 * 149.99972 * 3 2 1 7 7 C 1.37869 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00098 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00278 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47454 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47235 * 304.99907 * 10 9 7 12 12 N 1.46900 * 109.47297 * 64.99868 * 10 9 7 13 13 C 1.50700 * 109.47354 * 184.99728 * 10 9 7 14 14 C 1.38558 * 120.00545 * 286.78670 * 13 10 9 15 15 O 1.35990 * 120.07091 * 359.95626 * 14 13 10 16 16 C 1.39150 * 119.86801 * 179.97438 * 14 13 10 17 17 O 1.36016 * 120.06264 * 179.97438 * 16 14 13 18 18 C 1.38558 * 119.87960 * 359.97438 * 16 14 13 19 19 C 1.38247 * 120.01076 * 0.02562 * 18 16 14 20 20 C 1.38335 * 120.00669 * 106.50562 * 13 10 9 21 21 Cl 1.73602 * 119.93755 * 0.02829 * 20 13 10 22 22 H 0.96998 * 120.00187 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.46921 * 59.99602 * 9 7 2 24 24 H 1.09007 * 109.46860 * 299.99897 * 9 7 2 25 25 H 1.00900 * 111.00062 * 52.37714 * 12 10 9 26 26 H 1.00896 * 111.00462 * 176.33140 * 12 10 9 27 27 H 0.96698 * 114.00618 * 89.99318 * 15 14 13 28 28 H 0.96697 * 114.00202 * 89.99628 * 17 16 14 29 29 H 1.07994 * 119.99745 * 180.02562 * 18 16 14 30 30 H 1.07994 * 119.93153 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0027 11 1 2.9295 -3.5544 -0.8445 12 7 3.0085 -3.6550 1.2525 13 6 1.4961 -4.9635 -0.1277 14 6 0.7757 -5.4545 0.9493 15 8 0.7446 -4.7634 2.1201 16 6 0.0844 -6.6563 0.8306 17 8 -0.6236 -7.1421 1.8855 18 6 0.1186 -7.3572 -0.3641 19 6 0.8390 -6.8627 -1.4355 20 6 1.5226 -5.6654 -1.3194 21 17 2.4202 -5.0458 -2.6700 22 1 -0.4850 0.8400 0.0004 23 1 0.6248 -2.5562 -0.8919 24 1 0.6242 -2.5575 0.8881 25 1 2.3917 -3.6283 2.0505 26 1 3.6301 -4.4481 1.3022 27 1 0.0211 -4.1247 2.1809 28 1 -1.5430 -6.8440 1.9128 29 1 -0.4175 -8.2899 -0.4584 30 1 0.8651 -7.4103 -2.3659 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260227212.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:15 Heat of formation + Delta-G solvation = -72.709842 kcal Electronic energy + Delta-G solvation = -17147.634567 eV Core-core repulsion = 14161.902495 eV Total energy + Delta-G solvation = -2985.732072 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.35043 -37.42360 -36.92684 -35.69166 -34.83999 -32.40370 -29.75060 -28.99032 -28.17356 -24.48651 -22.55680 -22.28399 -20.19097 -18.37798 -17.89552 -16.61120 -16.33218 -15.87880 -14.94470 -14.82509 -14.58396 -14.30019 -13.71750 -13.17750 -12.80252 -12.70394 -12.59496 -12.01256 -11.52145 -11.20121 -11.02014 -10.99116 -10.62330 -10.57378 -10.40881 -9.93647 -9.66809 -9.13331 -8.51412 -8.37597 -8.31892 -7.79779 -5.95762 -3.93736 1.03591 1.20337 2.30280 3.37348 3.40875 3.43390 3.49759 4.09037 4.23917 4.52280 4.83543 5.01969 5.31118 5.39296 5.50306 5.70441 5.80853 5.92683 6.13433 6.22391 6.46013 6.56288 6.76284 7.39239 7.50534 7.61842 7.85259 8.01630 8.09088 8.37151 8.48522 9.12240 9.68745 11.16130 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.023033 B = 0.007077 C = 0.006029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.369120 B = 3955.686191 C = 4643.085341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.051 3.949 3 Si 0.893 3.107 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.492 4.492 8 H 0.064 0.936 9 C 0.040 3.960 10 C 0.129 3.871 11 H 0.089 0.911 12 N -0.818 5.818 13 C -0.104 4.104 14 C 0.099 3.901 15 O -0.482 6.482 16 C 0.081 3.919 17 O -0.488 6.488 18 C -0.135 4.135 19 C -0.105 4.105 20 C -0.028 4.028 21 Cl -0.056 7.056 22 H 0.258 0.742 23 H 0.019 0.981 24 H 0.013 0.987 25 H 0.348 0.652 26 H 0.318 0.682 27 H 0.396 0.604 28 H 0.387 0.613 29 H 0.137 0.863 30 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.713 -14.087 -1.127 14.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.148 4.148 3 Si 0.721 3.279 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.198 1.198 7 C -0.530 4.530 8 H 0.082 0.918 9 C 0.003 3.997 10 C 0.017 3.983 11 H 0.107 0.893 12 N -0.348 5.348 13 C -0.108 4.108 14 C 0.053 3.947 15 O -0.293 6.293 16 C 0.036 3.964 17 O -0.298 6.298 18 C -0.154 4.154 19 C -0.124 4.124 20 C -0.056 4.056 21 Cl -0.027 7.027 22 H 0.068 0.932 23 H 0.037 0.963 24 H 0.031 0.969 25 H 0.165 0.835 26 H 0.128 0.872 27 H 0.254 0.746 28 H 0.243 0.757 29 H 0.154 0.846 30 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.463 -13.788 -1.180 13.846 hybrid contribution -1.024 0.507 -0.158 1.154 sum -1.487 -13.281 -1.339 13.431 Atomic orbital electron populations 1.69952 1.06001 1.26429 1.52080 1.25000 0.94832 0.99204 0.95787 0.86570 0.79967 0.83406 0.77930 1.20910 1.21511 1.19766 1.21128 0.93526 0.89816 1.48573 0.91788 1.19091 0.92859 0.90911 0.96829 1.20972 0.94917 0.88615 0.93830 0.89283 1.59015 1.24191 1.47286 1.04322 1.21701 0.98598 0.99783 0.90692 1.18404 0.98658 0.91376 0.86232 1.84747 1.55239 1.56243 1.33056 1.18835 0.96802 0.93357 0.87455 1.84889 1.27213 1.72593 1.45099 1.21123 1.01729 1.00999 0.91506 1.20900 0.97412 0.94695 0.99424 1.20703 0.99595 0.95597 0.89697 1.98368 1.73470 1.87296 1.43598 0.93246 0.96277 0.96929 0.83470 0.87157 0.74594 0.75749 0.84559 0.84639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 2 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.49 -13.70 8.84 -34.44 -0.30 -14.01 16 8 H 0.06 1.81 7.74 -52.48 -0.41 1.40 16 9 C 0.04 0.99 4.42 -27.88 -0.12 0.87 16 10 C 0.13 2.64 2.65 -68.87 -0.18 2.45 16 11 H 0.09 1.91 6.33 -51.93 -0.33 1.58 16 12 N -0.82 -16.10 8.79 -5.66 -0.05 -16.15 16 13 C -0.10 -1.82 4.89 -104.47 -0.51 -2.34 16 14 C 0.10 1.60 6.48 -39.12 -0.25 1.35 16 15 O -0.48 -7.59 9.84 -34.23 -0.34 -7.93 16 16 C 0.08 1.13 6.72 -39.12 -0.26 0.87 16 17 O -0.49 -6.04 13.29 -34.32 -0.46 -6.49 16 18 C -0.13 -1.67 9.98 -39.46 -0.39 -2.06 16 19 C -0.11 -1.38 9.82 -39.53 -0.39 -1.76 16 20 C -0.03 -0.45 6.31 -39.50 -0.25 -0.70 16 21 Cl -0.06 -0.89 27.05 -51.86 -1.40 -2.29 16 22 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 23 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.01 0.31 6.77 -51.93 -0.35 -0.04 16 25 H 0.35 6.77 6.28 -39.29 -0.25 6.52 16 26 H 0.32 5.62 8.99 -39.29 -0.35 5.26 16 27 H 0.40 5.38 8.19 45.56 0.37 5.75 16 28 H 0.39 2.93 9.06 45.56 0.41 3.34 16 29 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 30 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 274.61 15.07 4.14 4.14 Total: -1.00 -31.80 274.61 -6.46 -38.26 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -1.30 Total: 13.31 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -2.77 Total: -13.97 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: 0.69 Total: -41.96 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.79 Total: -14.42 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.40 Total: -2.29 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.80 -6.46 -38.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260227212.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.447 kcal (2) G-P(sol) polarization free energy of solvation -31.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds