Wall clock time and date at job start Mon Mar 30 2020 06:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99734 * 2 1 4 4 H 1.48494 * 109.47585 * 270.00148 * 3 2 1 5 5 H 1.48506 * 109.47322 * 30.00263 * 3 2 1 6 6 H 1.48501 * 109.47033 * 149.99972 * 3 2 1 7 7 C 1.37869 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00098 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00278 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47454 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47235 * 304.99907 * 10 9 7 12 12 N 1.46900 * 109.47297 * 64.99868 * 10 9 7 13 13 C 1.50700 * 109.47354 * 184.99728 * 10 9 7 14 14 C 1.38558 * 120.00545 * 286.78670 * 13 10 9 15 15 O 1.35990 * 120.07091 * 359.95626 * 14 13 10 16 16 C 1.39150 * 119.86801 * 179.97438 * 14 13 10 17 17 O 1.36016 * 120.06264 * 179.97438 * 16 14 13 18 18 C 1.38558 * 119.87960 * 359.97438 * 16 14 13 19 19 C 1.38247 * 120.01076 * 0.02562 * 18 16 14 20 20 C 1.38335 * 120.00669 * 106.50562 * 13 10 9 21 21 Cl 1.73602 * 119.93755 * 0.02829 * 20 13 10 22 22 H 0.96998 * 120.00187 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.46921 * 59.99602 * 9 7 2 24 24 H 1.09007 * 109.46860 * 299.99897 * 9 7 2 25 25 H 1.00900 * 111.00062 * 52.37714 * 12 10 9 26 26 H 1.00896 * 111.00462 * 176.33140 * 12 10 9 27 27 H 0.96698 * 114.00618 * 89.99318 * 15 14 13 28 28 H 0.96697 * 114.00202 * 89.99628 * 17 16 14 29 29 H 1.07994 * 119.99745 * 180.02562 * 18 16 14 30 30 H 1.07994 * 119.93153 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0027 11 1 2.9295 -3.5544 -0.8445 12 7 3.0085 -3.6550 1.2525 13 6 1.4961 -4.9635 -0.1277 14 6 0.7757 -5.4545 0.9493 15 8 0.7446 -4.7634 2.1201 16 6 0.0844 -6.6563 0.8306 17 8 -0.6236 -7.1421 1.8855 18 6 0.1186 -7.3572 -0.3641 19 6 0.8390 -6.8627 -1.4355 20 6 1.5226 -5.6654 -1.3194 21 17 2.4202 -5.0458 -2.6700 22 1 -0.4850 0.8400 0.0004 23 1 0.6248 -2.5562 -0.8919 24 1 0.6242 -2.5575 0.8881 25 1 2.3917 -3.6283 2.0505 26 1 3.6301 -4.4481 1.3022 27 1 0.0211 -4.1247 2.1809 28 1 -1.5430 -6.8440 1.9128 29 1 -0.4175 -8.2899 -0.4584 30 1 0.8651 -7.4103 -2.3659 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260227212.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:14 Heat of formation + Delta-G solvation = -97.810189 kcal Electronic energy + Delta-G solvation = -17148.723000 eV Core-core repulsion = 14161.902495 eV Total energy + Delta-G solvation = -2986.820505 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.51465 -38.56420 -38.11043 -36.89209 -36.34695 -34.43780 -31.00652 -30.18209 -30.03246 -26.24832 -23.95719 -23.55080 -21.70377 -19.55316 -19.07015 -18.36932 -17.70184 -17.19634 -16.59465 -16.15354 -16.00560 -15.73771 -15.09233 -14.70376 -14.21784 -13.99773 -13.78567 -13.66923 -13.17367 -12.96139 -12.59565 -12.51057 -12.20982 -12.14745 -11.78505 -11.46868 -11.38182 -11.13778 -10.50402 -9.81745 -9.50937 -9.29485 -8.13168 -6.17809 -0.07154 0.06327 1.11829 1.42303 1.42718 1.54743 2.30876 2.46983 3.07499 3.11370 3.20653 3.69972 3.89183 4.08971 4.21636 4.50557 4.54946 4.67235 4.88477 5.00752 5.11147 5.17454 5.43363 5.49828 5.69149 5.85186 6.30864 6.47379 6.55033 6.82976 6.85199 6.93944 7.48366 8.98190 Molecular weight = 257.06amu Principal moments of inertia in cm(-1) A = 0.023033 B = 0.007077 C = 0.006029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.369120 B = 3955.686191 C = 4643.085341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.955 3.045 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.508 4.508 8 H 0.054 0.946 9 C 0.052 3.948 10 C 0.142 3.858 11 H 0.075 0.925 12 N -0.826 5.826 13 C -0.129 4.129 14 C 0.084 3.916 15 O -0.490 6.490 16 C 0.086 3.914 17 O -0.493 6.493 18 C -0.119 4.119 19 C -0.096 4.096 20 C -0.043 4.043 21 Cl -0.065 7.065 22 H 0.260 0.740 23 H -0.009 1.009 24 H 0.003 0.997 25 H 0.348 0.652 26 H 0.330 0.670 27 H 0.401 0.599 28 H 0.409 0.591 29 H 0.174 0.826 30 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.015 -15.530 -1.210 15.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.781 3.219 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.546 4.546 8 H 0.073 0.927 9 C 0.015 3.985 10 C 0.030 3.970 11 H 0.093 0.907 12 N -0.358 5.358 13 C -0.133 4.133 14 C 0.037 3.963 15 O -0.302 6.302 16 C 0.040 3.960 17 O -0.306 6.306 18 C -0.137 4.137 19 C -0.115 4.115 20 C -0.070 4.070 21 Cl -0.036 7.036 22 H 0.069 0.931 23 H 0.009 0.991 24 H 0.021 0.979 25 H 0.166 0.834 26 H 0.142 0.858 27 H 0.260 0.740 28 H 0.268 0.732 29 H 0.192 0.808 30 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.775 -15.241 -1.263 15.313 hybrid contribution -0.995 0.865 -0.106 1.322 sum -1.770 -14.376 -1.369 14.549 Atomic orbital electron populations 1.70055 1.07258 1.27284 1.52853 1.25781 0.95691 1.02574 0.95516 0.85591 0.78745 0.79416 0.78137 1.20247 1.20867 1.19443 1.21436 0.93315 0.91529 1.48339 0.92725 1.18853 0.93039 0.91800 0.94831 1.20465 0.93917 0.88973 0.93598 0.90705 1.58938 1.24551 1.48250 1.04076 1.21359 1.00388 0.99154 0.92400 1.18586 0.99323 0.92447 0.85896 1.84713 1.55787 1.56535 1.33162 1.18892 0.96371 0.92424 0.88313 1.84834 1.28839 1.72342 1.44620 1.21530 1.00469 1.01590 0.90159 1.21252 0.95880 0.93423 1.00937 1.20904 1.00430 0.96772 0.88912 1.98360 1.73819 1.87613 1.43790 0.93114 0.99117 0.97871 0.83429 0.85835 0.74045 0.73161 0.80829 0.81583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.57 13.29 21.44 0.28 -55.28 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.96 45.33 29.54 68.60 2.03 47.35 16 4 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 6 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.51 -28.90 8.84 25.60 0.23 -28.67 16 8 H 0.05 3.15 7.74 -2.91 -0.02 3.12 16 9 C 0.05 2.65 4.42 29.85 0.13 2.78 16 10 C 0.14 5.96 2.65 44.17 0.12 6.08 16 11 H 0.07 3.30 6.33 -2.39 -0.02 3.29 16 12 N -0.83 -32.97 8.79 -171.80 -1.51 -34.48 16 13 C -0.13 -4.53 4.89 -19.76 -0.10 -4.62 16 14 C 0.08 2.63 6.48 22.57 0.15 2.77 16 15 O -0.49 -15.42 9.84 -79.55 -0.78 -16.20 16 16 C 0.09 2.19 6.72 22.57 0.15 2.34 16 17 O -0.49 -10.75 13.29 -79.85 -1.06 -11.82 16 18 C -0.12 -2.49 9.98 22.35 0.22 -2.27 16 19 C -0.10 -2.23 9.82 22.30 0.22 -2.01 16 20 C -0.04 -1.31 6.31 22.32 0.14 -1.17 16 21 Cl -0.06 -2.03 27.05 -2.72 -0.07 -2.10 16 22 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 23 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 24 H 0.00 0.16 6.77 -2.38 -0.02 0.14 16 25 H 0.35 13.76 6.28 -89.69 -0.56 13.20 16 26 H 0.33 11.70 8.99 -89.70 -0.81 10.90 16 27 H 0.40 11.14 8.19 -74.06 -0.61 10.53 16 28 H 0.41 4.96 9.06 -74.06 -0.67 4.29 16 29 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 30 H 0.17 2.80 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -68.30 274.61 -0.81 -69.11 By element: Atomic # 1 Polarization: 29.09 SS G_CDS: -1.42 Total: 27.67 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: 1.72 Total: -24.24 kcal Atomic # 7 Polarization: -88.54 SS G_CDS: -1.23 Total: -89.77 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -1.84 Total: -28.02 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Atomic # 17 Polarization: -2.03 SS G_CDS: -0.07 Total: -2.10 kcal Total: -68.30 -0.81 -69.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260227212.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.700 kcal (2) G-P(sol) polarization free energy of solvation -68.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds