Wall clock time and date at job start Mon Mar 30 2020 06:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.36438 * 125.89122 * 2 1 4 4 H 0.97003 * 125.64488 * 359.97438 * 3 2 1 5 5 C 1.36357 * 108.72184 * 179.97438 * 3 2 1 6 6 Br 1.89092 * 125.90079 * 180.02562 * 5 3 2 7 7 C 1.34946 * 108.20010 * 0.02562 * 5 3 2 8 8 C 1.50706 * 126.28773 * 180.26432 * 7 5 3 9 9 C 1.34830 * 125.88105 * 179.97438 * 2 1 3 10 10 C 1.50695 * 126.28854 * 0.05772 * 9 2 1 11 11 C 1.50705 * 109.47096 * 269.95859 * 10 9 2 12 12 H 1.08005 * 119.99877 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00144 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00215 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00207 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47027 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47228 * 119.99893 * 15 13 11 18 18 H 1.48501 * 109.47244 * 239.99806 * 15 13 11 19 19 H 1.08999 * 109.46746 * 270.02578 * 1 2 3 20 20 H 1.09006 * 109.46488 * 30.01519 * 1 2 3 21 21 H 1.08989 * 109.47344 * 150.02264 * 1 2 3 22 22 H 1.09003 * 109.46511 * 269.68494 * 8 7 5 23 23 H 1.08993 * 109.47067 * 29.68576 * 8 7 5 24 24 H 1.08999 * 109.47316 * 149.69124 * 8 7 5 25 25 H 1.08999 * 109.47233 * 29.95557 * 10 9 2 26 26 H 1.09003 * 109.47695 * 149.95871 * 10 9 2 27 27 H 0.97000 * 120.00102 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3069 1.1053 0.0000 4 1 1.9997 2.0254 -0.0004 5 6 3.6097 0.7028 0.0006 6 35 5.1212 1.8389 0.0015 7 6 3.6340 -0.6464 0.0004 8 6 4.8646 -1.5164 0.0064 9 6 2.2973 -1.0924 0.0005 10 6 1.8358 -2.5270 -0.0001 11 6 1.6818 -3.0057 1.4206 12 1 1.8971 -2.3380 2.2418 13 6 1.2662 -4.2961 1.6720 14 7 1.0037 -5.1090 0.6721 15 14 1.0760 -4.8897 3.4330 16 1 1.4313 -3.7910 4.3668 17 1 -0.3309 -5.3032 3.6667 18 1 1.9772 -6.0470 3.6653 19 1 -0.3633 0.0005 1.0277 20 1 -0.3632 0.8899 -0.5141 21 1 -0.3633 -0.8901 -0.5134 22 1 5.1632 -1.7304 -1.0198 23 1 5.6740 -0.9972 0.5196 24 1 4.6465 -2.4507 0.5237 25 1 0.8774 -2.6002 -0.5140 26 1 2.5718 -3.1453 -0.5140 27 1 0.7117 -6.0169 0.8490 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260280698.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:01 Heat of formation + Delta-G solvation = 24.430605 kcal Electronic energy + Delta-G solvation = -11952.931887 eV Core-core repulsion = 9756.984455 eV Total energy + Delta-G solvation = -2195.947432 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 257.011 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.64841 -33.51448 -32.44833 -31.62410 -30.11122 -28.23604 -26.37714 -24.23289 -22.64587 -18.83999 -18.09790 -16.68229 -16.17045 -14.41541 -14.33958 -13.49935 -12.85233 -12.55600 -12.27802 -12.05581 -11.94892 -11.84597 -11.37290 -11.17209 -10.82764 -10.59726 -10.47029 -10.30288 -10.09505 -9.57173 -9.30960 -8.31868 -7.71182 -7.18215 -5.93293 -3.95405 1.76586 2.56069 3.34309 3.41878 3.46273 3.65544 3.89189 4.53463 5.40341 5.54656 5.67727 5.88925 6.05647 6.15051 6.35373 6.40161 6.53356 6.63702 6.90262 7.05842 7.41929 7.59547 7.77021 7.97597 8.03790 8.09771 8.50123 9.10493 9.67680 11.16080 Molecular weight = 257.01amu Principal moments of inertia in cm(-1) A = 0.035415 B = 0.006481 C = 0.006002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.441065 B = 4319.304338 C = 4664.210246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.018 3.982 3 N -0.554 5.554 4 H 0.406 0.594 5 C -0.018 4.018 6 Br -0.028 7.028 7 C -0.106 4.106 8 C -0.083 4.083 9 C -0.106 4.106 10 C 0.081 3.919 11 C -0.500 4.500 12 H 0.054 0.946 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.889 3.111 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.285 1.285 19 H 0.069 0.931 20 H 0.049 0.951 21 H 0.086 0.914 22 H 0.058 0.942 23 H 0.054 0.946 24 H 0.078 0.922 25 H 0.024 0.976 26 H 0.026 0.974 27 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.288 14.020 -2.473 15.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.094 4.094 3 N -0.153 5.153 4 H 0.242 0.758 5 C -0.206 4.206 6 Br 0.055 6.945 7 C -0.117 4.117 8 C -0.140 4.140 9 C -0.113 4.113 10 C 0.044 3.956 11 C -0.538 4.538 12 H 0.073 0.927 13 C -0.144 4.144 14 N -0.537 5.537 15 Si 0.717 3.283 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.211 1.211 19 H 0.088 0.912 20 H 0.068 0.932 21 H 0.105 0.895 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.097 0.903 25 H 0.043 0.957 26 H 0.044 0.956 27 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.741 14.413 -2.506 15.716 hybrid contribution -0.569 -0.064 1.027 1.176 sum 5.172 14.349 -1.479 15.324 Atomic orbital electron populations 1.20210 0.88044 1.02294 1.02499 1.20273 0.93210 0.85250 1.10669 1.41636 1.04082 1.08036 1.61523 0.75773 1.21363 0.83270 0.92903 1.23029 1.96551 1.34747 1.64749 1.98459 1.19393 0.96225 0.90040 1.06014 1.20202 0.93243 0.99330 1.01274 1.20062 0.90429 0.97098 1.03690 1.17717 0.96200 0.84635 0.97061 1.21151 1.44044 0.96636 0.92005 0.92737 1.24986 0.95784 0.96863 0.96766 1.69967 1.46766 1.06578 1.30370 0.86583 0.77585 0.78735 0.85414 1.19819 1.21146 1.21076 0.91240 0.93203 0.89544 0.92357 0.92746 0.90280 0.95737 0.95575 0.93125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.18 10.21 36.01 0.37 -0.81 15 2 C 0.02 0.34 7.17 -81.75 -0.59 -0.25 15 3 N -0.55 -9.19 6.08 -7.56 -0.05 -9.23 15 4 H 0.41 5.31 8.96 -40.82 -0.37 4.95 15 5 C -0.02 -0.32 7.64 -16.71 -0.13 -0.44 15 6 Br -0.03 -0.40 33.48 -68.01 -2.28 -2.68 15 7 C -0.11 -2.16 6.14 -104.78 -0.64 -2.80 15 8 C -0.08 -1.54 9.91 36.01 0.36 -1.19 15 9 C -0.11 -2.37 5.33 -104.82 -0.56 -2.93 15 10 C 0.08 2.10 5.00 -29.04 -0.15 1.96 15 11 C -0.50 -13.97 9.09 -34.44 -0.31 -14.28 15 12 H 0.05 1.55 7.74 -52.48 -0.41 1.14 15 13 C 0.06 1.59 5.46 -17.82 -0.10 1.50 15 14 N -0.90 -26.43 13.29 55.43 0.74 -25.69 15 15 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 15 16 H -0.27 -6.59 7.11 56.52 0.40 -6.19 15 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 15 19 H 0.07 1.11 8.14 -51.93 -0.42 0.69 15 20 H 0.05 0.64 8.14 -51.93 -0.42 0.21 15 21 H 0.09 1.50 7.13 -51.94 -0.37 1.12 15 22 H 0.06 0.99 8.14 -51.93 -0.42 0.57 15 23 H 0.05 0.90 7.75 -51.93 -0.40 0.49 15 24 H 0.08 1.61 8.04 -51.93 -0.42 1.19 15 25 H 0.02 0.66 7.13 -51.93 -0.37 0.29 15 26 H 0.03 0.72 8.04 -51.93 -0.42 0.30 15 27 H 0.26 7.22 8.31 -40.82 -0.34 6.88 15 LS Contribution 257.17 15.07 3.88 3.88 Total: -1.00 -30.03 257.17 -7.63 -37.66 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -3.15 Total: -1.28 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: -1.75 Total: -19.25 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.69 Total: -34.93 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 35 Polarization: -0.40 SS G_CDS: -2.28 Total: -2.68 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.03 -7.63 -37.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260280698.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.090 kcal (2) G-P(sol) polarization free energy of solvation -30.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds