Wall clock time and date at job start Mon Mar 30 2020 06:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.36438 * 125.89122 * 2 1 4 4 H 0.97003 * 125.64488 * 359.97438 * 3 2 1 5 5 C 1.36357 * 108.72184 * 179.97438 * 3 2 1 6 6 Br 1.89092 * 125.90079 * 180.02562 * 5 3 2 7 7 C 1.34946 * 108.20010 * 0.02562 * 5 3 2 8 8 C 1.50706 * 126.28773 * 180.26432 * 7 5 3 9 9 C 1.34830 * 125.88105 * 179.97438 * 2 1 3 10 10 C 1.50695 * 126.28854 * 0.05772 * 9 2 1 11 11 C 1.50705 * 109.47096 * 269.95859 * 10 9 2 12 12 H 1.08005 * 119.99877 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00144 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00215 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00207 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47027 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47228 * 119.99893 * 15 13 11 18 18 H 1.48501 * 109.47244 * 239.99806 * 15 13 11 19 19 H 1.08999 * 109.46746 * 270.02578 * 1 2 3 20 20 H 1.09006 * 109.46488 * 30.01519 * 1 2 3 21 21 H 1.08989 * 109.47344 * 150.02264 * 1 2 3 22 22 H 1.09003 * 109.46511 * 269.68494 * 8 7 5 23 23 H 1.08993 * 109.47067 * 29.68576 * 8 7 5 24 24 H 1.08999 * 109.47316 * 149.69124 * 8 7 5 25 25 H 1.08999 * 109.47233 * 29.95557 * 10 9 2 26 26 H 1.09003 * 109.47695 * 149.95871 * 10 9 2 27 27 H 0.97000 * 120.00102 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3069 1.1053 0.0000 4 1 1.9997 2.0254 -0.0004 5 6 3.6097 0.7028 0.0006 6 35 5.1212 1.8389 0.0015 7 6 3.6340 -0.6464 0.0004 8 6 4.8646 -1.5164 0.0064 9 6 2.2973 -1.0924 0.0005 10 6 1.8358 -2.5270 -0.0001 11 6 1.6818 -3.0057 1.4206 12 1 1.8971 -2.3380 2.2418 13 6 1.2662 -4.2961 1.6720 14 7 1.0037 -5.1090 0.6721 15 14 1.0760 -4.8897 3.4330 16 1 1.4313 -3.7910 4.3668 17 1 -0.3309 -5.3032 3.6667 18 1 1.9772 -6.0470 3.6653 19 1 -0.3633 0.0005 1.0277 20 1 -0.3632 0.8899 -0.5141 21 1 -0.3633 -0.8901 -0.5134 22 1 5.1632 -1.7304 -1.0198 23 1 5.6740 -0.9972 0.5196 24 1 4.6465 -2.4507 0.5237 25 1 0.8774 -2.6002 -0.5140 26 1 2.5718 -3.1453 -0.5140 27 1 0.7117 -6.0169 0.8490 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260280698.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:01 Heat of formation + Delta-G solvation = 6.724655 kcal Electronic energy + Delta-G solvation = -11953.699675 eV Core-core repulsion = 9756.984455 eV Total energy + Delta-G solvation = -2196.715220 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 257.011 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.12783 -35.50396 -33.91088 -33.35772 -31.49230 -29.95340 -28.06486 -25.84081 -24.53567 -20.32594 -19.71658 -18.38287 -18.07729 -16.43311 -15.82957 -15.04147 -14.32204 -14.22103 -13.93447 -13.79157 -13.50956 -13.22650 -13.05312 -12.97786 -12.58354 -12.47828 -11.93329 -11.76287 -11.66704 -11.42137 -11.28785 -10.50604 -9.27719 -8.69984 -8.08307 -6.20531 0.39071 1.11105 1.41729 1.42887 1.55445 2.01301 2.48714 2.56547 3.20397 4.15707 4.31388 4.42576 4.66908 4.82437 4.83804 4.93644 5.06372 5.17000 5.31608 5.46146 5.49475 5.65264 5.86794 6.06365 6.28105 6.37149 6.71153 6.92189 7.46948 8.99240 Molecular weight = 257.01amu Principal moments of inertia in cm(-1) A = 0.035415 B = 0.006481 C = 0.006002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.441065 B = 4319.304338 C = 4664.210246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.027 3.973 3 N -0.534 5.534 4 H 0.427 0.573 5 C -0.012 4.012 6 Br 0.014 6.986 7 C -0.136 4.136 8 C -0.077 4.077 9 C -0.155 4.155 10 C 0.096 3.904 11 C -0.511 4.511 12 H 0.046 0.954 13 C 0.006 3.994 14 N -0.931 5.931 15 Si 0.957 3.043 16 H -0.269 1.269 17 H -0.276 1.276 18 H -0.279 1.279 19 H 0.072 0.928 20 H 0.090 0.910 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.074 0.926 24 H 0.049 0.951 25 H 0.004 0.996 26 H -0.005 1.005 27 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.501 15.977 -1.648 16.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.087 4.087 3 N -0.135 5.135 4 H 0.267 0.733 5 C -0.201 4.201 6 Br 0.097 6.903 7 C -0.147 4.147 8 C -0.135 4.135 9 C -0.162 4.162 10 C 0.059 3.941 11 C -0.549 4.549 12 H 0.065 0.935 13 C -0.192 4.192 14 N -0.572 5.572 15 Si 0.782 3.218 16 H -0.193 1.193 17 H -0.202 1.202 18 H -0.205 1.205 19 H 0.091 0.909 20 H 0.109 0.891 21 H 0.086 0.914 22 H 0.086 0.914 23 H 0.093 0.907 24 H 0.068 0.932 25 H 0.022 0.978 26 H 0.013 0.987 27 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.955 16.407 -1.683 17.535 hybrid contribution -0.576 -0.588 0.721 1.094 sum 5.379 15.819 -0.962 16.736 Atomic orbital electron populations 1.20257 0.86171 1.03434 1.03017 1.20482 0.94391 0.85141 1.08683 1.41568 1.03458 1.08561 1.59884 0.73317 1.21557 0.84776 0.92921 1.20856 1.96591 1.32485 1.62935 1.98328 1.19578 0.95862 0.91657 1.07561 1.20142 0.93514 0.98061 1.01753 1.19841 0.92491 0.96022 1.07816 1.17353 0.94192 0.87086 0.95510 1.21374 1.43897 0.96876 0.92752 0.93545 1.25813 0.95354 0.96973 1.01031 1.70084 1.47523 1.06997 1.32614 0.85521 0.77866 0.78189 0.80210 1.19298 1.20211 1.20525 0.90922 0.89105 0.91365 0.91428 0.90686 0.93203 0.97818 0.98717 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.21 10.21 71.24 0.73 -1.48 15 2 C 0.03 1.00 7.17 41.06 0.29 1.30 15 3 N -0.53 -16.45 6.08 -177.82 -1.08 -17.53 15 4 H 0.43 9.63 8.96 -92.71 -0.83 8.80 15 5 C -0.01 -0.41 7.64 83.23 0.64 0.23 15 6 Br 0.01 0.35 33.48 -20.37 -0.68 -0.33 15 7 C -0.14 -5.53 6.14 -19.96 -0.12 -5.65 15 8 C -0.08 -2.90 9.91 71.24 0.71 -2.19 15 9 C -0.16 -7.05 5.33 -19.99 -0.11 -7.15 15 10 C 0.10 5.22 5.00 29.10 0.15 5.36 15 11 C -0.51 -29.40 9.09 25.60 0.23 -29.16 15 12 H 0.05 2.69 7.74 -2.91 -0.02 2.66 15 13 C 0.01 0.33 5.46 84.65 0.46 0.79 15 14 N -0.93 -56.29 13.29 21.45 0.28 -56.01 15 15 Si 0.96 44.76 29.54 68.60 2.03 46.78 15 16 H -0.27 -12.24 7.11 99.48 0.71 -11.54 15 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 15 18 H -0.28 -12.78 7.11 99.48 0.71 -12.07 15 19 H 0.07 2.22 8.14 -2.39 -0.02 2.20 15 20 H 0.09 2.04 8.14 -2.38 -0.02 2.03 15 21 H 0.07 2.38 7.13 -2.39 -0.02 2.36 15 22 H 0.07 2.33 8.14 -2.39 -0.02 2.31 15 23 H 0.07 2.40 7.75 -2.39 -0.02 2.38 15 24 H 0.05 2.11 8.04 -2.39 -0.02 2.09 15 25 H 0.00 0.21 7.13 -2.39 -0.02 0.19 15 26 H -0.01 -0.32 8.04 -2.39 -0.02 -0.34 15 27 H 0.26 14.89 8.31 -92.71 -0.77 14.12 15 Total: -1.00 -65.51 257.17 3.87 -61.64 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: 0.35 Total: 3.41 kcal Atomic # 6 Polarization: -40.94 SS G_CDS: 2.98 Total: -37.96 kcal Atomic # 7 Polarization: -72.75 SS G_CDS: -0.80 Total: -73.54 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 35 Polarization: 0.35 SS G_CDS: -0.68 Total: -0.33 kcal Total: -65.51 3.87 -61.64 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260280698.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.367 kcal (2) G-P(sol) polarization free energy of solvation -65.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds