Wall clock time and date at job start Mon Mar 30 2020 07:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38267 * 119.97023 * 2 1 4 4 C 1.38275 * 120.01351 * 179.76779 * 3 2 1 5 5 Cl 1.73596 * 120.02559 * 180.25579 * 4 3 2 6 6 C 1.38595 * 119.94861 * 0.46503 * 4 3 2 7 7 F 1.35104 * 120.02787 * 179.78789 * 6 4 3 8 8 C 1.38397 * 119.93810 * 359.51551 * 6 4 3 9 9 C 1.50699 * 120.00433 * 180.27551 * 8 6 4 10 10 H 1.09000 * 109.47156 * 164.99868 * 9 8 6 11 11 N 1.46902 * 109.47321 * 44.99413 * 9 8 6 12 12 C 1.50703 * 109.47466 * 284.99826 * 9 8 6 13 13 H 1.08010 * 119.99472 * 359.97438 * 12 9 8 14 14 C 1.37875 * 120.00382 * 179.97438 * 12 9 8 15 15 N 1.31509 * 119.99895 * 0.02562 * 14 12 9 16 16 Si 1.86802 * 119.99706 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.47097 * 90.00523 * 16 14 12 18 18 H 1.48505 * 109.47169 * 209.99872 * 16 14 12 19 19 H 1.48495 * 109.47568 * 330.00070 * 16 14 12 20 20 C 1.38217 * 119.97293 * 179.97438 * 2 1 3 21 21 C 1.50704 * 119.97399 * 359.97438 * 20 2 1 22 22 H 1.09007 * 109.47019 * 270.02066 * 1 2 3 23 23 H 1.09003 * 109.47401 * 30.01814 * 1 2 3 24 24 H 1.09003 * 109.47293 * 150.02309 * 1 2 3 25 25 H 1.08001 * 119.98762 * 0.02562 * 3 2 1 26 26 H 1.00891 * 111.00443 * 300.00449 * 11 9 8 27 27 H 1.00902 * 110.99597 * 63.95728 * 11 9 8 28 28 H 0.97001 * 119.99629 * 180.02562 * 15 14 12 29 29 H 1.09000 * 109.47113 * 270.02034 * 21 20 2 30 30 H 1.09001 * 109.46730 * 30.02030 * 21 20 2 31 31 H 1.08997 * 109.47259 * 150.02069 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1977 1.1978 0.0000 4 6 3.5804 1.1988 0.0049 5 17 4.4479 2.7025 0.0116 6 6 4.2732 -0.0015 0.0000 7 9 5.6243 -0.0023 0.0004 8 6 3.5798 -1.1992 0.0004 9 6 4.3317 -2.5053 0.0014 10 1 3.6526 -3.3152 0.2676 11 7 5.4245 -2.4405 0.9809 12 6 4.9015 -2.7580 -1.3707 13 1 4.7353 -2.0443 -2.1642 14 6 5.6348 -3.9001 -1.6131 15 7 5.8366 -4.7693 -0.6470 16 14 6.3404 -4.2136 -3.3141 17 1 7.6991 -3.6211 -3.4032 18 1 6.4217 -5.6768 -3.5543 19 1 5.4613 -3.5922 -4.3369 20 6 2.1975 -1.1973 0.0005 21 6 1.4427 -2.5018 0.0017 22 1 -0.3633 0.0004 1.0277 23 1 -0.3634 0.8898 -0.5141 24 1 -0.3634 -0.8902 -0.5135 25 1 1.6570 2.1327 0.0004 26 1 6.0682 -1.6969 0.7560 27 1 5.0645 -2.3362 1.9178 28 1 6.3528 -5.5726 -0.8175 29 1 1.2609 -2.8154 1.0296 30 1 0.4904 -2.3709 -0.5122 31 1 2.0310 -3.2624 -0.5115 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260282838.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:39 Heat of formation + Delta-G solvation = -50.476283 kcal Electronic energy + Delta-G solvation = -17312.194679 eV Core-core repulsion = 14339.799515 eV Total energy + Delta-G solvation = -2972.395163 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.068 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.93081 -40.68176 -37.75611 -36.53604 -33.85884 -33.77899 -31.97397 -28.49125 -27.91791 -27.09660 -24.64654 -22.16983 -21.46530 -18.81948 -18.20845 -17.75585 -16.79066 -16.71255 -16.33918 -15.78377 -15.13743 -15.04834 -14.68411 -14.59028 -14.30008 -13.69776 -13.55517 -13.45949 -13.32068 -12.99200 -12.82427 -12.51195 -12.37687 -12.17298 -12.00419 -11.94378 -11.59402 -11.17181 -10.56387 -9.59649 -9.34098 -8.92938 -8.00992 -6.21368 0.02276 0.20130 0.98823 1.39198 1.41600 1.49947 2.39248 2.51851 3.21066 3.23513 3.76849 3.85516 4.12055 4.14417 4.42519 4.51213 4.66121 4.78157 4.82631 4.90790 4.93222 4.97224 5.19757 5.22362 5.37314 5.50420 5.67991 5.72474 5.89761 6.11539 6.59887 7.05543 7.21496 7.49830 9.02462 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.020417 B = 0.008196 C = 0.006772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.109972 B = 3415.468947 C = 4133.449187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.081 4.081 3 C -0.096 4.096 4 C -0.083 4.083 5 Cl -0.059 7.059 6 C 0.076 3.924 7 F -0.138 7.138 8 C -0.125 4.125 9 C 0.260 3.740 10 H 0.043 0.957 11 N -0.829 5.829 12 C -0.540 4.540 13 H 0.036 0.964 14 C 0.040 3.960 15 N -0.875 5.875 16 Si 0.942 3.058 17 H -0.283 1.283 18 H -0.278 1.278 19 H -0.271 1.271 20 C -0.066 4.066 21 C -0.116 4.116 22 H 0.089 0.911 23 H 0.086 0.914 24 H 0.082 0.918 25 H 0.168 0.832 26 H 0.325 0.675 27 H 0.307 0.693 28 H 0.256 0.744 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.724 10.907 2.294 16.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.082 4.082 3 C -0.114 4.114 4 C -0.111 4.111 5 Cl -0.030 7.030 6 C 0.056 3.944 7 F -0.117 7.117 8 C -0.128 4.128 9 C 0.150 3.850 10 H 0.061 0.939 11 N -0.359 5.359 12 C -0.579 4.579 13 H 0.054 0.946 14 C -0.164 4.164 15 N -0.511 5.511 16 Si 0.768 3.232 17 H -0.209 1.209 18 H -0.203 1.203 19 H -0.196 1.196 20 C -0.067 4.067 21 C -0.172 4.172 22 H 0.108 0.892 23 H 0.105 0.895 24 H 0.100 0.900 25 H 0.186 0.814 26 H 0.142 0.858 27 H 0.118 0.882 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.117 0.883 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.302 10.109 2.102 15.308 hybrid contribution 1.146 0.770 -0.637 1.521 sum -10.156 10.879 1.465 14.955 Atomic orbital electron populations 1.20925 0.87159 1.04479 1.03965 1.20148 0.98523 0.90567 0.98927 1.21020 0.89720 1.00132 1.00537 1.21081 0.94022 0.85395 1.10561 1.98337 1.77069 1.30426 1.97134 1.17528 0.76925 0.93340 1.06596 1.91327 1.29497 1.96828 1.94016 1.21554 0.95711 0.96512 0.99043 1.18003 0.88249 0.87033 0.91709 0.93915 1.59124 1.19428 1.54059 1.03262 1.20998 1.36053 1.05921 0.94901 0.94560 1.25580 0.95814 0.95739 0.99311 1.70199 1.38276 1.10085 1.32492 0.85842 0.78710 0.77378 0.81308 1.20898 1.20290 1.19555 1.19936 0.91492 0.97237 0.98064 1.20932 1.00169 0.92886 1.03172 0.89202 0.89502 0.89969 0.81419 0.85845 0.88204 0.93439 0.89938 0.88263 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.81 9.60 71.23 0.68 -1.13 16 2 C -0.08 -2.15 5.88 -19.86 -0.12 -2.27 16 3 C -0.10 -2.57 9.48 22.29 0.21 -2.36 16 4 C -0.08 -2.79 6.33 22.36 0.14 -2.65 16 5 Cl -0.06 -1.75 28.62 -2.72 -0.08 -1.83 16 6 C 0.08 3.13 6.98 22.39 0.16 3.29 16 7 F -0.14 -6.22 13.89 44.97 0.62 -5.59 16 8 C -0.12 -5.26 4.88 -19.83 -0.10 -5.35 16 9 C 0.26 13.01 2.32 43.42 0.10 13.11 16 10 H 0.04 2.26 5.92 -2.39 -0.01 2.25 16 11 N -0.83 -41.49 8.41 -174.95 -1.47 -42.96 16 12 C -0.54 -30.37 8.63 25.60 0.22 -30.15 16 13 H 0.04 2.09 7.74 -2.91 -0.02 2.07 16 14 C 0.04 2.24 5.39 84.65 0.46 2.70 16 15 N -0.87 -51.49 12.77 21.45 0.27 -51.22 16 16 Si 0.94 44.78 29.54 68.60 2.03 46.81 16 17 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 19 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 20 C -0.07 -2.25 5.88 -19.87 -0.12 -2.37 16 21 C -0.12 -3.44 8.83 71.24 0.63 -2.82 16 22 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 23 H 0.09 1.11 8.09 -2.39 -0.02 1.09 16 24 H 0.08 1.27 5.94 -2.39 -0.01 1.26 16 25 H 0.17 3.26 8.06 -2.91 -0.02 3.24 16 26 H 0.33 16.40 6.13 -89.70 -0.55 15.85 16 27 H 0.31 13.77 9.06 -89.69 -0.81 12.96 16 28 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 29 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.10 2.23 5.94 -2.39 -0.01 2.21 16 31 H 0.05 2.06 6.39 -2.39 -0.02 2.04 16 Total: -1.00 -64.88 276.61 3.47 -61.41 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: -0.17 Total: 23.36 kcal Atomic # 6 Polarization: -32.26 SS G_CDS: 2.27 Total: -29.99 kcal Atomic # 7 Polarization: -92.98 SS G_CDS: -1.20 Total: -94.18 kcal Atomic # 9 Polarization: -6.22 SS G_CDS: 0.62 Total: -5.59 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 17 Polarization: -1.75 SS G_CDS: -0.08 Total: -1.83 kcal Total: -64.88 3.47 -61.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260282838.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.937 kcal (2) G-P(sol) polarization free energy of solvation -64.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds