Wall clock time and date at job start Mon Mar 30 2020 07:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38261 * 119.96796 * 2 1 4 4 C 1.38276 * 120.01269 * 180.02562 * 3 2 1 5 5 Cl 1.73596 * 120.02442 * 179.97438 * 4 3 2 6 6 C 1.38596 * 119.94974 * 359.72484 * 4 3 2 7 7 F 1.35094 * 120.02824 * 180.30021 * 6 4 3 8 8 C 1.38400 * 119.93764 * 0.53050 * 6 4 3 9 9 C 1.50699 * 120.00466 * 179.74292 * 8 6 4 10 10 H 1.09001 * 109.46895 * 192.79909 * 9 8 6 11 11 N 1.46897 * 109.47398 * 312.80639 * 9 8 6 12 12 C 1.50701 * 109.46901 * 72.80618 * 9 8 6 13 13 H 1.07997 * 120.00131 * 359.97438 * 12 9 8 14 14 C 1.37877 * 120.00095 * 180.02562 * 12 9 8 15 15 N 1.31517 * 119.99785 * 359.97438 * 14 12 9 16 16 Si 1.86800 * 120.00513 * 179.72086 * 14 12 9 17 17 H 1.48497 * 109.47690 * 180.27230 * 16 14 12 18 18 H 1.48502 * 109.46987 * 300.27739 * 16 14 12 19 19 H 1.48502 * 109.46895 * 60.27054 * 16 14 12 20 20 C 1.38219 * 119.97165 * 179.97438 * 2 1 3 21 21 C 1.50701 * 119.97354 * 359.96622 * 20 2 1 22 22 H 1.09000 * 109.46970 * 270.01467 * 1 2 3 23 23 H 1.09000 * 109.47404 * 30.01775 * 1 2 3 24 24 H 1.09004 * 109.46858 * 150.02081 * 1 2 3 25 25 H 1.07999 * 119.99219 * 0.02908 * 3 2 1 26 26 H 1.00907 * 110.99130 * 296.04332 * 11 9 8 27 27 H 1.00893 * 111.00218 * 59.99518 * 11 9 8 28 28 H 0.97001 * 120.00178 * 359.72338 * 15 14 12 29 29 H 1.09000 * 109.47434 * 264.47680 * 21 20 2 30 30 H 1.09000 * 109.47211 * 24.48464 * 21 20 2 31 31 H 1.09001 * 109.46901 * 144.47802 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1978 0.0000 4 6 3.5804 1.1988 -0.0005 5 17 4.4479 2.7025 -0.0012 6 6 4.2733 -0.0015 0.0047 7 9 5.6242 -0.0023 0.0103 8 6 3.5799 -1.1993 -0.0007 9 6 4.3318 -2.5053 -0.0008 10 1 3.6454 -3.3196 -0.2330 11 7 5.3955 -2.4578 -1.0128 12 6 4.9413 -2.7341 1.3583 13 1 4.7988 -2.0065 2.1435 14 6 5.6817 -3.8720 1.5990 15 7 5.8556 -4.7580 0.6427 16 14 6.4438 -4.1521 3.2814 17 1 7.1896 -5.4362 3.2795 18 1 7.3755 -3.0389 3.5942 19 1 5.3719 -4.2037 4.3079 20 6 2.1975 -1.1974 0.0005 21 6 1.4428 -2.5017 0.0019 22 1 -0.3633 0.0003 1.0277 23 1 -0.3634 0.8898 -0.5141 24 1 -0.3633 -0.8902 -0.5135 25 1 1.6570 2.1327 0.0005 26 1 5.0083 -2.3697 -1.9404 27 1 6.0453 -1.7105 -0.8197 28 1 5.4596 -4.6128 -0.2308 29 1 1.3469 -2.8650 1.0251 30 1 0.4511 -2.3482 -0.4236 31 1 1.9845 -3.2355 -0.5949 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260282844.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:42 Heat of formation + Delta-G solvation = -56.497373 kcal Electronic energy + Delta-G solvation = -17356.663851 eV Core-core repulsion = 14384.007594 eV Total energy + Delta-G solvation = -2972.656257 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.068 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.99624 -40.78581 -37.84417 -36.86660 -33.90764 -33.75531 -32.03553 -28.59574 -27.58179 -27.14723 -24.63005 -22.29107 -21.70163 -19.14099 -18.30122 -17.95162 -16.81984 -16.76221 -16.15178 -15.63115 -15.35782 -15.21937 -14.97348 -14.66832 -14.15783 -13.89437 -13.68414 -13.51525 -13.47580 -12.97798 -12.76432 -12.58593 -12.26598 -12.07972 -11.97050 -11.95737 -11.70361 -10.84577 -10.47874 -9.69510 -9.42674 -9.30769 -8.40977 -6.25759 -0.05573 0.11719 0.92557 1.52406 1.59943 1.79029 2.37108 2.61627 3.13891 3.29424 3.67376 3.76398 4.03364 4.05322 4.19922 4.36729 4.56316 4.67888 4.73363 4.80742 4.84615 4.90432 5.10915 5.11679 5.25167 5.37826 5.57545 5.77675 5.90007 6.15171 6.62850 6.74187 6.97690 7.63022 8.96303 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.020314 B = 0.008269 C = 0.006809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.014264 B = 3385.427087 C = 4111.096024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.079 4.079 3 C -0.094 4.094 4 C -0.083 4.083 5 Cl -0.056 7.056 6 C 0.077 3.923 7 F -0.139 7.139 8 C -0.122 4.122 9 C 0.241 3.759 10 H 0.040 0.960 11 N -0.845 5.845 12 C -0.611 4.611 13 H 0.027 0.973 14 C -0.007 4.007 15 N -0.915 5.915 16 Si 1.104 2.896 17 H -0.282 1.282 18 H -0.284 1.284 19 H -0.271 1.271 20 C -0.068 4.068 21 C -0.113 4.113 22 H 0.086 0.914 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.171 0.829 26 H 0.314 0.686 27 H 0.332 0.668 28 H 0.279 0.721 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.194 11.632 -2.175 16.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.080 4.080 3 C -0.112 4.112 4 C -0.110 4.110 5 Cl -0.027 7.027 6 C 0.057 3.943 7 F -0.117 7.117 8 C -0.125 4.125 9 C 0.132 3.868 10 H 0.058 0.942 11 N -0.376 5.376 12 C -0.650 4.650 13 H 0.045 0.955 14 C -0.211 4.211 15 N -0.550 5.550 16 Si 0.927 3.073 17 H -0.207 1.207 18 H -0.210 1.210 19 H -0.196 1.196 20 C -0.069 4.069 21 C -0.169 4.169 22 H 0.104 0.896 23 H 0.109 0.891 24 H 0.104 0.896 25 H 0.188 0.812 26 H 0.125 0.875 27 H 0.148 0.852 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.124 0.876 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.936 9.966 -1.072 14.835 hybrid contribution -0.218 2.103 -1.137 2.400 sum -11.154 12.069 -2.209 16.582 Atomic orbital electron populations 1.20943 0.86999 1.04720 1.03913 1.20156 0.98612 0.90473 0.98756 1.21050 0.89683 1.00209 1.00284 1.21084 0.94062 0.85450 1.10414 1.98340 1.77036 1.30227 1.97111 1.17516 0.76950 0.93363 1.06457 1.91345 1.29503 1.96891 1.93983 1.21278 0.95595 0.96060 0.99587 1.18194 0.88722 0.88088 0.91797 0.94205 1.59338 1.19808 1.54391 1.04017 1.21849 1.38607 1.08583 0.95961 0.95492 1.26846 0.95026 0.92467 1.06755 1.70668 1.42327 1.36646 1.05354 0.83113 0.76330 0.76109 0.71699 1.20717 1.20988 1.19625 1.19932 0.91423 0.97351 0.98221 1.20927 1.00414 0.92650 1.02885 0.89592 0.89120 0.89643 0.81198 0.87494 0.85234 0.90943 0.91031 0.87611 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.79 9.59 71.24 0.68 -1.10 16 2 C -0.08 -2.09 5.88 -19.86 -0.12 -2.21 16 3 C -0.09 -2.50 9.48 22.28 0.21 -2.29 16 4 C -0.08 -2.77 6.33 22.36 0.14 -2.63 16 5 Cl -0.06 -1.68 28.62 -2.72 -0.08 -1.75 16 6 C 0.08 3.19 6.96 22.39 0.16 3.35 16 7 F -0.14 -6.32 13.92 44.97 0.63 -5.69 16 8 C -0.12 -5.15 4.88 -19.83 -0.10 -5.25 16 9 C 0.24 12.02 2.16 43.42 0.09 12.12 16 10 H 0.04 2.07 5.44 -2.39 -0.01 2.06 16 11 N -0.84 -41.38 7.70 -174.96 -1.35 -42.73 16 12 C -0.61 -34.87 8.51 25.60 0.22 -34.65 16 13 H 0.03 1.59 7.74 -2.91 -0.02 1.56 16 14 C -0.01 -0.39 5.39 84.65 0.46 0.06 16 15 N -0.91 -56.05 13.50 21.45 0.29 -55.76 16 16 Si 1.10 51.96 29.90 68.60 2.05 54.01 16 17 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 18 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 20 C -0.07 -2.32 5.88 -19.87 -0.12 -2.43 16 21 C -0.11 -3.35 9.05 71.24 0.64 -2.71 16 22 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.09 1.07 8.09 -2.39 -0.02 1.05 16 24 H 0.08 1.23 5.89 -2.39 -0.01 1.21 16 25 H 0.17 3.24 8.06 -2.91 -0.02 3.22 16 26 H 0.31 13.55 9.06 -89.69 -0.81 12.74 16 27 H 0.33 16.57 6.26 -89.70 -0.56 16.01 16 28 H 0.28 17.18 6.40 -92.71 -0.59 16.59 16 29 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.11 2.20 5.74 -2.39 -0.01 2.19 16 31 H 0.06 1.89 6.21 -2.39 -0.01 1.88 16 Total: -1.00 -67.36 274.22 3.81 -63.55 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: -0.01 Total: 26.12 kcal Atomic # 6 Polarization: -40.02 SS G_CDS: 2.27 Total: -37.74 kcal Atomic # 7 Polarization: -97.43 SS G_CDS: -1.06 Total: -98.49 kcal Atomic # 9 Polarization: -6.32 SS G_CDS: 0.63 Total: -5.69 kcal Atomic # 14 Polarization: 51.96 SS G_CDS: 2.05 Total: 54.01 kcal Atomic # 17 Polarization: -1.68 SS G_CDS: -0.08 Total: -1.75 kcal Total: -67.36 3.81 -63.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260282844.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.048 kcal (2) G-P(sol) polarization free energy of solvation -67.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds