Wall clock time and date at job start Mon Mar 30 2020 06:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76199 * 103.00176 * 2 1 4 4 C 1.38986 * 120.06441 * 359.97438 * 3 2 1 5 5 C 1.38066 * 119.92957 * 180.02562 * 4 3 2 6 6 C 1.38418 * 120.06936 * 0.26185 * 5 4 3 7 7 Cl 1.73595 * 119.93493 * 179.74340 * 6 5 4 8 8 C 1.38384 * 120.13327 * 359.48347 * 6 5 4 9 9 C 1.50697 * 119.96675 * 180.26350 * 8 6 5 10 10 H 1.08994 * 109.47334 * 40.24680 * 9 8 6 11 11 N 1.46899 * 109.47273 * 160.25285 * 9 8 6 12 12 C 1.50701 * 109.46561 * 280.25395 * 9 8 6 13 13 H 1.07996 * 120.00452 * 359.97438 * 12 9 8 14 14 C 1.37884 * 119.99738 * 180.02562 * 12 9 8 15 15 N 1.31509 * 119.99909 * 359.97438 * 14 12 9 16 16 Si 1.86802 * 119.99729 * 179.97438 * 14 12 9 17 17 H 1.48494 * 109.47378 * 60.00044 * 16 14 12 18 18 H 1.48504 * 109.46772 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47183 * 299.99741 * 16 14 12 20 20 C 1.38106 * 120.06587 * 0.50966 * 8 6 5 21 21 H 1.08998 * 109.46793 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46940 * 300.00073 * 1 2 3 23 23 H 1.08998 * 109.46835 * 60.00380 * 1 2 3 24 24 H 1.07999 * 120.03453 * 0.02562 * 4 3 2 25 25 H 1.08002 * 119.96163 * 179.97438 * 5 4 3 26 26 H 1.00900 * 111.00112 * 296.04269 * 11 9 8 27 27 H 1.00898 * 110.99958 * 59.99879 * 11 9 8 28 28 H 0.97001 * 119.99844 * 180.02562 * 15 14 12 29 29 H 1.07997 * 120.03618 * 179.72043 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1951 2.6659 -0.0005 5 6 1.5089 4.0104 -0.0011 6 6 2.8330 4.4135 -0.0065 7 17 3.2236 6.1050 -0.0139 8 6 3.8462 3.4710 -0.0007 9 6 5.2865 3.9141 -0.0007 10 1 5.4022 4.7737 0.6594 11 7 6.1372 2.8144 0.4736 12 6 5.6942 4.2970 -1.4001 13 1 4.9817 4.2262 -2.2086 14 6 6.9772 4.7369 -1.6484 15 7 7.8449 4.8227 -0.6639 16 14 7.4827 5.2108 -3.3831 17 1 6.6231 6.3226 -3.8629 18 1 8.9024 5.6465 -3.3834 19 1 7.3247 4.0396 -4.2822 20 6 3.5387 2.1246 0.0000 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.1617 2.3519 -0.0005 25 1 0.7202 4.7483 -0.0019 26 1 5.9268 2.5822 1.4327 27 1 6.0477 2.0051 -0.1224 28 1 8.7474 5.1325 -0.8386 29 1 4.3298 1.3894 0.0000 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260319059.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:12 Heat of formation + Delta-G solvation = 19.472675 kcal Electronic energy + Delta-G solvation = -14644.708718 eV Core-core repulsion = 12105.726851 eV Total energy + Delta-G solvation = -2538.981867 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.034 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.00183 -35.72283 -34.71828 -31.76415 -30.50263 -29.80116 -28.65558 -26.03573 -23.12826 -22.33250 -20.24400 -17.20628 -16.47991 -16.25745 -15.28927 -14.63333 -14.35625 -14.11777 -13.89493 -13.72686 -13.23059 -12.97057 -12.64127 -12.35602 -11.76252 -11.40079 -11.20649 -11.04114 -10.73605 -10.68710 -10.23985 -10.13381 -9.74823 -9.36548 -9.06135 -8.42724 -8.18579 -7.19374 -7.16483 -5.85190 -3.99184 1.42844 1.57480 1.69793 2.45117 2.86196 3.38055 3.42183 3.45313 3.96815 4.52508 4.93039 4.93721 5.07101 5.12861 5.38200 5.49341 5.63990 5.76988 5.94890 6.20906 6.29893 6.40710 6.58967 6.76756 7.14414 7.43239 7.92022 8.17092 8.59588 8.95912 9.13138 9.68292 11.19407 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.023438 B = 0.007000 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.371505 B = 3999.206496 C = 4584.486983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 S -0.125 6.125 3 C -0.082 4.082 4 C -0.149 4.149 5 C -0.098 4.098 6 C -0.033 4.033 7 Cl -0.059 7.059 8 C -0.047 4.047 9 C 0.254 3.746 10 H 0.062 0.938 11 N -0.810 5.810 12 C -0.521 4.521 13 H 0.052 0.948 14 C 0.087 3.913 15 N -0.846 5.846 16 Si 0.883 3.117 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.100 4.100 21 H 0.104 0.896 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.122 0.878 25 H 0.127 0.873 26 H 0.300 0.700 27 H 0.318 0.682 28 H 0.256 0.744 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.867 -5.664 2.611 15.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 S 0.116 5.884 3 C -0.194 4.194 4 C -0.173 4.173 5 C -0.119 4.119 6 C -0.063 4.063 7 Cl -0.030 7.030 8 C -0.052 4.052 9 C 0.144 3.856 10 H 0.080 0.920 11 N -0.336 5.336 12 C -0.560 4.560 13 H 0.070 0.930 14 C -0.120 4.120 15 N -0.481 5.481 16 Si 0.711 3.289 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.124 4.124 21 H 0.123 0.877 22 H 0.101 0.899 23 H 0.101 0.899 24 H 0.140 0.860 25 H 0.145 0.855 26 H 0.110 0.890 27 H 0.132 0.868 28 H 0.066 0.934 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.353 -6.029 2.539 13.979 hybrid contribution -1.511 0.977 -0.942 2.030 sum -13.864 -5.052 1.598 14.842 Atomic orbital electron populations 1.23624 0.95435 1.06644 1.05501 1.85425 1.05693 1.04157 1.93134 1.21632 0.96798 0.95717 1.05274 1.20825 0.97752 0.92378 1.06337 1.20853 0.94778 0.95562 1.00659 1.20805 0.93527 0.86072 1.05872 1.98350 1.94623 1.13422 1.96644 1.21778 1.00846 0.91268 0.91353 1.18358 0.78479 0.91025 0.97785 0.92015 1.59154 1.60632 1.10714 1.03124 1.20592 0.96980 1.46677 0.91732 0.92987 1.24879 0.96479 0.94542 0.96127 1.70083 1.04197 1.43285 1.30507 0.86836 0.77453 0.78956 0.85696 1.20315 1.21362 1.20353 1.20584 0.93848 0.95674 1.02311 0.87740 0.89945 0.89900 0.86026 0.85548 0.88976 0.86830 0.93389 0.85166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.15 101.05 0.92 -0.38 15 2 S -0.13 -1.68 22.56 -107.50 -2.43 -4.11 15 3 C -0.08 -1.33 6.11 -39.04 -0.24 -1.57 15 4 C -0.15 -2.23 9.36 -39.37 -0.37 -2.60 15 5 C -0.10 -1.58 9.82 -39.58 -0.39 -1.96 15 6 C -0.03 -0.64 6.30 -39.46 -0.25 -0.89 15 7 Cl -0.06 -1.16 27.29 -51.86 -1.42 -2.57 15 8 C -0.05 -0.98 5.02 -104.62 -0.52 -1.51 15 9 C 0.25 6.13 2.30 -70.02 -0.16 5.97 15 10 H 0.06 1.65 7.36 -51.93 -0.38 1.27 15 11 N -0.81 -18.63 8.01 -6.65 -0.05 -18.68 15 12 C -0.52 -14.01 8.46 -34.44 -0.29 -14.31 15 13 H 0.05 1.43 7.74 -52.49 -0.41 1.02 15 14 C 0.09 2.39 5.39 -17.82 -0.10 2.30 15 15 N -0.85 -24.37 12.77 55.43 0.71 -23.67 15 16 Si 0.88 21.44 29.54 -169.99 -5.02 16.42 15 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 15 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 20 C -0.10 -1.87 8.99 -39.37 -0.35 -2.23 15 21 H 0.10 0.74 8.14 -51.92 -0.42 0.32 15 22 H 0.08 0.69 7.75 -51.92 -0.40 0.29 15 23 H 0.08 0.72 7.75 -51.93 -0.40 0.31 15 24 H 0.12 1.43 5.88 -52.49 -0.31 1.12 15 25 H 0.13 1.70 8.06 -52.49 -0.42 1.28 15 26 H 0.30 6.16 9.06 -39.29 -0.36 5.81 15 27 H 0.32 7.00 7.28 -39.29 -0.29 6.71 15 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 15 29 H 0.13 2.38 6.24 -52.49 -0.33 2.05 15 LS Contribution 275.96 15.07 4.16 4.16 Total: -1.00 -29.18 275.96 -8.65 -37.83 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -2.85 Total: 7.80 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: -1.75 Total: -17.18 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 0.65 Total: -42.35 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.43 Total: -4.11 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -1.42 Total: -2.57 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.18 -8.65 -37.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260319059.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.305 kcal (2) G-P(sol) polarization free energy of solvation -29.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds