Wall clock time and date at job start Mon Mar 30 2020 06:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76199 * 103.00176 * 2 1 4 4 C 1.38986 * 120.06441 * 359.97438 * 3 2 1 5 5 C 1.38066 * 119.92957 * 180.02562 * 4 3 2 6 6 C 1.38418 * 120.06936 * 0.26185 * 5 4 3 7 7 Cl 1.73595 * 119.93493 * 179.74340 * 6 5 4 8 8 C 1.38384 * 120.13327 * 359.48347 * 6 5 4 9 9 C 1.50697 * 119.96675 * 180.26350 * 8 6 5 10 10 H 1.08994 * 109.47334 * 40.24680 * 9 8 6 11 11 N 1.46899 * 109.47273 * 160.25285 * 9 8 6 12 12 C 1.50701 * 109.46561 * 280.25395 * 9 8 6 13 13 H 1.07996 * 120.00452 * 359.97438 * 12 9 8 14 14 C 1.37884 * 119.99738 * 180.02562 * 12 9 8 15 15 N 1.31509 * 119.99909 * 359.97438 * 14 12 9 16 16 Si 1.86802 * 119.99729 * 179.97438 * 14 12 9 17 17 H 1.48494 * 109.47378 * 60.00044 * 16 14 12 18 18 H 1.48504 * 109.46772 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47183 * 299.99741 * 16 14 12 20 20 C 1.38106 * 120.06587 * 0.50966 * 8 6 5 21 21 H 1.08998 * 109.46793 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46940 * 300.00073 * 1 2 3 23 23 H 1.08998 * 109.46835 * 60.00380 * 1 2 3 24 24 H 1.07999 * 120.03453 * 0.02562 * 4 3 2 25 25 H 1.08002 * 119.96163 * 179.97438 * 5 4 3 26 26 H 1.00900 * 111.00112 * 296.04269 * 11 9 8 27 27 H 1.00898 * 110.99958 * 59.99879 * 11 9 8 28 28 H 0.97001 * 119.99844 * 180.02562 * 15 14 12 29 29 H 1.07997 * 120.03618 * 179.72043 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1951 2.6659 -0.0005 5 6 1.5089 4.0104 -0.0011 6 6 2.8330 4.4135 -0.0065 7 17 3.2236 6.1050 -0.0139 8 6 3.8462 3.4710 -0.0007 9 6 5.2865 3.9141 -0.0007 10 1 5.4022 4.7737 0.6594 11 7 6.1372 2.8144 0.4736 12 6 5.6942 4.2970 -1.4001 13 1 4.9817 4.2262 -2.2086 14 6 6.9772 4.7369 -1.6484 15 7 7.8449 4.8227 -0.6639 16 14 7.4827 5.2108 -3.3831 17 1 6.6231 6.3226 -3.8629 18 1 8.9024 5.6465 -3.3834 19 1 7.3247 4.0396 -4.2822 20 6 3.5387 2.1246 0.0000 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.1617 2.3519 -0.0005 25 1 0.7202 4.7483 -0.0019 26 1 5.9268 2.5822 1.4327 27 1 6.0477 2.0051 -0.1224 28 1 8.7474 5.1325 -0.8386 29 1 4.3298 1.3894 0.0000 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260319059.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:12 Heat of formation + Delta-G solvation = 1.482404 kcal Electronic energy + Delta-G solvation = -14645.488835 eV Core-core repulsion = 12105.726851 eV Total energy + Delta-G solvation = -2539.761984 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.034 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.40540 -37.18216 -36.46906 -33.72993 -31.82598 -31.14596 -29.65127 -27.97102 -24.80340 -23.67974 -21.84968 -18.54266 -18.46148 -17.51503 -16.79487 -16.49579 -15.90345 -15.46951 -15.06953 -14.80752 -14.68530 -14.33748 -14.11155 -13.50682 -13.39003 -12.99056 -12.78852 -12.58460 -12.47064 -12.46172 -11.95070 -11.46659 -11.29038 -11.18558 -10.51999 -10.34374 -9.72649 -8.96376 -8.33281 -7.94799 -6.13780 0.07497 0.34597 0.54661 1.40367 1.43987 1.44111 1.51203 1.51972 2.45377 2.63692 3.29209 3.82634 3.88467 4.23751 4.30593 4.31150 4.39012 4.48741 4.60898 4.86010 4.93972 5.06542 5.15629 5.28850 5.58297 5.75527 5.78505 6.18805 6.65935 7.08543 7.23351 7.56317 9.08713 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.023438 B = 0.007000 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.371505 B = 3999.206496 C = 4584.486983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 S -0.144 6.144 3 C -0.083 4.083 4 C -0.136 4.136 5 C -0.091 4.091 6 C -0.054 4.054 7 Cl -0.074 7.074 8 C -0.075 4.075 9 C 0.261 3.739 10 H 0.028 0.972 11 N -0.820 5.820 12 C -0.523 4.523 13 H 0.040 0.960 14 C 0.040 3.960 15 N -0.878 5.878 16 Si 0.939 3.061 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.274 1.274 20 C -0.113 4.113 21 H 0.129 0.871 22 H 0.096 0.904 23 H 0.094 0.906 24 H 0.163 0.837 25 H 0.157 0.843 26 H 0.312 0.688 27 H 0.323 0.677 28 H 0.254 0.746 29 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.597 -6.863 2.126 18.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 S 0.098 5.902 3 C -0.196 4.196 4 C -0.159 4.159 5 C -0.111 4.111 6 C -0.084 4.084 7 Cl -0.045 7.045 8 C -0.080 4.080 9 C 0.151 3.849 10 H 0.046 0.954 11 N -0.348 5.348 12 C -0.562 4.562 13 H 0.058 0.942 14 C -0.164 4.164 15 N -0.514 5.514 16 Si 0.765 3.235 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.200 1.200 20 C -0.137 4.137 21 H 0.147 0.853 22 H 0.115 0.885 23 H 0.113 0.887 24 H 0.181 0.819 25 H 0.174 0.826 26 H 0.123 0.877 27 H 0.136 0.864 28 H 0.063 0.937 29 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.097 -7.241 2.051 16.869 hybrid contribution -0.833 1.217 -0.751 1.655 sum -15.930 -6.024 1.300 17.081 Atomic orbital electron populations 1.23812 0.91079 1.08733 1.06761 1.85573 1.10413 1.01656 1.92572 1.21876 0.96060 0.97993 1.03628 1.21311 0.99385 0.91448 1.03794 1.21198 0.93922 0.96966 0.99039 1.21000 0.94730 0.85192 1.07460 1.98335 1.94877 1.14431 1.96823 1.21388 0.99227 0.92765 0.94580 1.17911 0.81107 0.90297 0.95596 0.95449 1.58974 1.61082 1.10694 1.04018 1.20806 0.96645 1.45896 0.92874 0.94181 1.25543 0.96699 0.94812 0.99316 1.70202 1.04323 1.44729 1.32173 0.85948 0.77088 0.78647 0.81835 1.20039 1.21057 1.19970 1.20554 0.95293 0.94610 1.03212 0.85302 0.88474 0.88730 0.81927 0.82564 0.87654 0.86363 0.93657 0.85722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.15 113.37 1.04 -0.77 15 2 S -0.14 -3.45 22.56 -56.49 -1.27 -4.72 15 3 C -0.08 -2.51 6.11 22.62 0.14 -2.38 15 4 C -0.14 -3.55 9.36 22.41 0.21 -3.34 15 5 C -0.09 -2.69 9.82 22.27 0.22 -2.47 15 6 C -0.05 -2.07 6.30 22.35 0.14 -1.93 15 7 Cl -0.07 -2.90 27.29 -2.72 -0.07 -2.97 15 8 C -0.07 -3.15 5.02 -19.86 -0.10 -3.25 15 9 C 0.26 13.05 2.30 43.42 0.10 13.15 15 10 H 0.03 1.55 7.36 -2.39 -0.02 1.53 15 11 N -0.82 -38.92 8.01 -174.96 -1.40 -40.33 15 12 C -0.52 -28.85 8.46 25.60 0.22 -28.63 15 13 H 0.04 2.25 7.74 -2.91 -0.02 2.23 15 14 C 0.04 2.24 5.39 84.66 0.46 2.70 15 15 N -0.88 -51.86 12.77 21.45 0.27 -51.58 15 16 Si 0.94 44.63 29.54 68.60 2.03 46.66 15 17 H -0.27 -12.85 7.11 99.48 0.71 -12.14 15 18 H -0.29 -13.32 7.11 99.48 0.71 -12.61 15 19 H -0.27 -12.78 7.11 99.48 0.71 -12.07 15 20 C -0.11 -4.18 8.99 22.41 0.20 -3.98 15 21 H 0.13 1.17 8.14 -2.39 -0.02 1.15 15 22 H 0.10 1.08 7.75 -2.39 -0.02 1.06 15 23 H 0.09 1.11 7.75 -2.39 -0.02 1.09 15 24 H 0.16 2.89 5.88 -2.91 -0.02 2.88 15 25 H 0.16 3.63 8.06 -2.91 -0.02 3.60 15 26 H 0.31 13.28 9.06 -89.69 -0.81 12.46 15 27 H 0.32 14.62 7.28 -89.70 -0.65 13.97 15 28 H 0.25 14.46 8.31 -92.71 -0.77 13.69 15 29 H 0.13 4.63 6.24 -2.91 -0.02 4.61 15 Total: -1.00 -64.30 275.96 1.90 -62.40 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: -0.27 Total: 21.45 kcal Atomic # 6 Polarization: -33.53 SS G_CDS: 2.62 Total: -30.91 kcal Atomic # 7 Polarization: -90.78 SS G_CDS: -1.13 Total: -91.91 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 16 Polarization: -3.45 SS G_CDS: -1.27 Total: -4.72 kcal Atomic # 17 Polarization: -2.90 SS G_CDS: -0.07 Total: -2.97 kcal Total: -64.30 1.90 -62.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260319059.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.882 kcal (2) G-P(sol) polarization free energy of solvation -64.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds