Wall clock time and date at job start Mon Mar 30 2020 06:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76193 * 103.00250 * 2 1 4 4 C 1.38984 * 120.06689 * 0.02562 * 3 2 1 5 5 C 1.38062 * 119.93290 * 179.97438 * 4 3 2 6 6 C 1.38421 * 120.06811 * 0.02562 * 5 4 3 7 7 Cl 1.73598 * 119.93098 * 179.97438 * 6 5 4 8 8 C 1.38369 * 120.13417 * 359.97438 * 6 5 4 9 9 C 1.50701 * 119.96620 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47060 * 325.00137 * 9 8 6 11 11 N 1.46901 * 109.46921 * 204.99956 * 9 8 6 12 12 C 1.50699 * 109.47269 * 84.99990 * 9 8 6 13 13 H 1.08000 * 119.99792 * 0.02562 * 12 9 8 14 14 C 1.37878 * 119.99902 * 179.97438 * 12 9 8 15 15 N 1.31522 * 119.99730 * 179.97438 * 14 12 9 16 16 Si 1.86801 * 120.00223 * 0.02562 * 14 12 9 17 17 H 1.48501 * 109.46854 * 89.99533 * 16 14 12 18 18 H 1.48495 * 109.46995 * 209.99565 * 16 14 12 19 19 H 1.48503 * 109.46814 * 329.99605 * 16 14 12 20 20 C 1.38109 * 120.06679 * 0.27750 * 8 6 5 21 21 H 1.08994 * 109.47188 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.46896 * 300.00410 * 1 2 3 23 23 H 1.09001 * 109.46979 * 59.99915 * 1 2 3 24 24 H 1.08002 * 120.03422 * 359.96904 * 4 3 2 25 25 H 1.08007 * 119.96777 * 179.97438 * 5 4 3 26 26 H 1.00898 * 111.00245 * 299.99784 * 11 9 8 27 27 H 1.00904 * 111.00313 * 63.95601 * 11 9 8 28 28 H 0.96999 * 119.99784 * 180.02562 * 15 14 12 29 29 H 1.07999 * 120.03284 * 179.70525 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1951 2.6659 0.0005 5 6 1.5089 4.0103 0.0011 6 6 2.8331 4.4135 0.0005 7 17 3.2236 6.1050 0.0005 8 6 3.8461 3.4710 0.0000 9 6 5.2865 3.9141 0.0000 10 1 5.3862 4.8258 -0.5891 11 7 6.1235 2.8585 -0.5859 12 6 5.7305 4.1795 1.4154 13 1 5.0388 4.0408 2.2333 14 6 7.0198 4.5985 1.6664 15 7 7.4071 4.8306 2.9017 16 14 8.2163 4.8377 0.2519 17 1 8.1235 6.2344 -0.2439 18 1 9.5990 4.5703 0.7226 19 1 7.8772 3.8986 -0.8473 20 6 3.5386 2.1246 -0.0058 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 0.1617 2.3520 0.0005 25 1 0.7203 4.7484 0.0011 26 1 6.0485 2.0024 -0.0573 27 1 5.8883 2.7068 -1.5553 28 1 8.3141 5.1257 3.0783 29 1 4.3297 1.3894 -0.0110 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260319065.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:15 Heat of formation + Delta-G solvation = 25.193516 kcal Electronic energy + Delta-G solvation = -14685.589358 eV Core-core repulsion = 12146.855565 eV Total energy + Delta-G solvation = -2538.733793 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.034 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.14310 -35.85527 -35.00980 -31.90847 -30.60368 -30.08875 -28.79905 -26.35015 -23.09963 -22.47124 -20.17407 -17.34086 -16.81348 -16.36966 -15.46311 -14.72139 -14.44128 -14.18147 -13.96182 -13.81021 -13.43476 -13.04913 -12.72821 -12.42121 -12.03640 -11.54484 -11.32509 -11.23999 -10.75434 -10.46617 -10.31235 -10.19231 -9.85779 -9.32375 -9.14236 -8.52062 -8.32435 -7.28344 -7.25505 -5.97636 -4.07597 1.33424 1.51920 1.59773 2.39447 2.73680 3.53771 3.63657 3.86608 3.94314 4.73023 4.89594 4.90719 4.97902 5.04103 5.28951 5.45152 5.53243 5.65888 5.81676 5.91264 6.17003 6.28777 6.42899 6.57259 6.97091 7.01883 7.58675 8.12135 8.30778 8.66440 9.01373 9.65760 11.12001 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.024427 B = 0.007324 C = 0.006207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.976602 B = 3822.336639 C = 4510.075529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 S -0.122 6.122 3 C -0.081 4.081 4 C -0.145 4.145 5 C -0.096 4.096 6 C -0.033 4.033 7 Cl -0.060 7.060 8 C -0.039 4.039 9 C 0.217 3.783 10 H 0.059 0.941 11 N -0.834 5.834 12 C -0.511 4.511 13 H 0.069 0.931 14 C 0.089 3.911 15 N -0.898 5.898 16 Si 0.862 3.138 17 H -0.296 1.296 18 H -0.304 1.304 19 H -0.192 1.192 20 C -0.096 4.096 21 H 0.105 0.895 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.124 0.876 25 H 0.129 0.871 26 H 0.330 0.670 27 H 0.309 0.691 28 H 0.263 0.737 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.613 -6.327 -8.277 17.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.119 5.881 3 C -0.194 4.194 4 C -0.169 4.169 5 C -0.116 4.116 6 C -0.062 4.062 7 Cl -0.031 7.031 8 C -0.044 4.044 9 C 0.107 3.893 10 H 0.076 0.924 11 N -0.364 5.364 12 C -0.549 4.549 13 H 0.087 0.913 14 C -0.116 4.116 15 N -0.535 5.535 16 Si 0.689 3.311 17 H -0.224 1.224 18 H -0.231 1.231 19 H -0.113 1.113 20 C -0.119 4.119 21 H 0.123 0.877 22 H 0.102 0.898 23 H 0.101 0.899 24 H 0.142 0.858 25 H 0.147 0.853 26 H 0.145 0.855 27 H 0.121 0.879 28 H 0.072 0.928 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.176 -6.728 -8.011 16.053 hybrid contribution -1.139 1.021 -0.418 1.586 sum -13.315 -5.707 -8.428 16.760 Atomic orbital electron populations 1.23636 0.95345 1.06740 1.05553 1.85444 1.05784 1.03823 1.93003 1.21634 0.96715 0.95947 1.05072 1.20862 0.97883 0.92344 1.05803 1.20852 0.94720 0.95638 1.00397 1.20795 0.93674 0.85893 1.05850 1.98354 1.94579 1.13518 1.96668 1.21182 0.99375 0.91441 0.92439 1.18744 0.81247 0.91472 0.97845 0.92376 1.60053 1.59417 1.12253 1.04665 1.20522 0.98113 1.47239 0.89056 0.91282 1.24916 0.98081 0.92755 0.95819 1.69950 1.18526 1.45141 1.19837 0.87266 0.78442 0.78926 0.86493 1.22378 1.23135 1.11321 1.20531 0.93988 0.95435 1.01979 0.87663 0.89810 0.89926 0.85844 0.85342 0.85483 0.87920 0.92791 0.85050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.15 101.05 0.92 -0.33 15 2 S -0.12 -1.58 22.56 -107.50 -2.43 -4.00 15 3 C -0.08 -1.27 6.11 -39.05 -0.24 -1.51 15 4 C -0.15 -2.08 9.36 -39.37 -0.37 -2.45 15 5 C -0.10 -1.48 9.82 -39.58 -0.39 -1.87 15 6 C -0.03 -0.61 6.32 -39.47 -0.25 -0.86 15 7 Cl -0.06 -1.13 27.38 -51.86 -1.42 -2.55 15 8 C -0.04 -0.78 4.98 -104.62 -0.52 -1.31 15 9 C 0.22 4.85 1.86 -70.02 -0.13 4.72 15 10 H 0.06 1.36 6.54 -51.93 -0.34 1.02 15 11 N -0.83 -16.80 5.42 -6.65 -0.04 -16.83 15 12 C -0.51 -14.01 9.29 -34.44 -0.32 -14.33 15 13 H 0.07 2.12 7.98 -52.49 -0.42 1.70 15 14 C 0.09 2.55 5.47 -17.82 -0.10 2.45 15 15 N -0.90 -27.70 13.96 55.43 0.77 -26.92 15 16 Si 0.86 21.57 26.94 -169.99 -4.58 16.99 15 17 H -0.30 -7.57 7.11 56.52 0.40 -7.17 15 18 H -0.30 -7.85 7.11 56.52 0.40 -7.44 15 19 H -0.19 -4.39 5.17 56.52 0.29 -4.10 15 20 C -0.10 -1.70 9.01 -39.37 -0.35 -2.06 15 21 H 0.10 0.71 8.14 -51.93 -0.42 0.29 15 22 H 0.08 0.70 7.75 -51.93 -0.40 0.30 15 23 H 0.08 0.65 7.75 -51.92 -0.40 0.25 15 24 H 0.12 1.39 5.88 -52.49 -0.31 1.08 15 25 H 0.13 1.66 8.06 -52.48 -0.42 1.24 15 26 H 0.33 6.42 7.20 -39.29 -0.28 6.14 15 27 H 0.31 5.37 9.06 -39.29 -0.36 5.01 15 28 H 0.26 7.70 8.31 -40.82 -0.34 7.36 15 29 H 0.13 2.25 6.28 -52.49 -0.33 1.93 15 LS Contribution 269.98 15.07 4.07 4.07 Total: -1.00 -30.91 269.98 -8.29 -39.21 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -2.93 Total: 7.59 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -1.74 Total: -17.54 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: 0.74 Total: -43.76 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.58 Total: 16.99 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.43 Total: -4.00 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -1.42 Total: -2.55 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.91 -8.29 -39.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260319065.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.400 kcal (2) G-P(sol) polarization free energy of solvation -30.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds