Wall clock time and date at job start Mon Mar 30 2020 06:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76193 * 103.00250 * 2 1 4 4 C 1.38984 * 120.06689 * 0.02562 * 3 2 1 5 5 C 1.38062 * 119.93290 * 179.97438 * 4 3 2 6 6 C 1.38421 * 120.06811 * 0.02562 * 5 4 3 7 7 Cl 1.73598 * 119.93098 * 179.97438 * 6 5 4 8 8 C 1.38369 * 120.13417 * 359.97438 * 6 5 4 9 9 C 1.50701 * 119.96620 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47060 * 325.00137 * 9 8 6 11 11 N 1.46901 * 109.46921 * 204.99956 * 9 8 6 12 12 C 1.50699 * 109.47269 * 84.99990 * 9 8 6 13 13 H 1.08000 * 119.99792 * 0.02562 * 12 9 8 14 14 C 1.37878 * 119.99902 * 179.97438 * 12 9 8 15 15 N 1.31522 * 119.99730 * 179.97438 * 14 12 9 16 16 Si 1.86801 * 120.00223 * 0.02562 * 14 12 9 17 17 H 1.48501 * 109.46854 * 89.99533 * 16 14 12 18 18 H 1.48495 * 109.46995 * 209.99565 * 16 14 12 19 19 H 1.48503 * 109.46814 * 329.99605 * 16 14 12 20 20 C 1.38109 * 120.06679 * 0.27750 * 8 6 5 21 21 H 1.08994 * 109.47188 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.46896 * 300.00410 * 1 2 3 23 23 H 1.09001 * 109.46979 * 59.99915 * 1 2 3 24 24 H 1.08002 * 120.03422 * 359.96904 * 4 3 2 25 25 H 1.08007 * 119.96777 * 179.97438 * 5 4 3 26 26 H 1.00898 * 111.00245 * 299.99784 * 11 9 8 27 27 H 1.00904 * 111.00313 * 63.95601 * 11 9 8 28 28 H 0.96999 * 119.99784 * 180.02562 * 15 14 12 29 29 H 1.07999 * 120.03284 * 179.70525 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1951 2.6659 0.0005 5 6 1.5089 4.0103 0.0011 6 6 2.8331 4.4135 0.0005 7 17 3.2236 6.1050 0.0005 8 6 3.8461 3.4710 0.0000 9 6 5.2865 3.9141 0.0000 10 1 5.3862 4.8258 -0.5891 11 7 6.1235 2.8585 -0.5859 12 6 5.7305 4.1795 1.4154 13 1 5.0388 4.0408 2.2333 14 6 7.0198 4.5985 1.6664 15 7 7.4071 4.8306 2.9017 16 14 8.2163 4.8377 0.2519 17 1 8.1235 6.2344 -0.2439 18 1 9.5990 4.5703 0.7226 19 1 7.8772 3.8986 -0.8473 20 6 3.5386 2.1246 -0.0058 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 0.1617 2.3520 0.0005 25 1 0.7203 4.7484 0.0011 26 1 6.0485 2.0024 -0.0573 27 1 5.8883 2.7068 -1.5553 28 1 8.3141 5.1257 3.0783 29 1 4.3297 1.3894 -0.0110 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260319065.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:14 Heat of formation + Delta-G solvation = 4.916025 kcal Electronic energy + Delta-G solvation = -14686.468656 eV Core-core repulsion = 12146.855565 eV Total energy + Delta-G solvation = -2539.613091 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 257.034 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.49017 -37.26472 -36.67324 -34.00223 -31.86804 -31.37074 -29.69630 -28.26153 -24.71975 -23.76245 -21.75599 -18.98214 -18.52151 -17.55979 -16.93817 -16.49582 -15.86607 -15.54893 -15.27757 -14.82330 -14.81056 -14.37041 -14.19296 -13.72179 -13.49515 -13.04152 -12.79703 -12.64146 -12.56367 -12.23258 -12.03425 -11.51088 -11.40199 -11.20064 -10.70200 -10.37824 -9.77355 -8.97356 -8.34593 -8.20263 -6.31940 0.03622 0.30120 0.53278 1.33479 1.49814 1.52141 1.58542 1.94581 2.54853 2.62880 3.18112 3.76750 3.83598 4.11985 4.26672 4.29931 4.30789 4.38876 4.53686 4.81295 4.88969 4.94671 5.08423 5.17973 5.34206 5.64099 5.70755 6.15408 6.47235 6.78839 6.99834 7.44430 8.93166 Molecular weight = 257.03amu Principal moments of inertia in cm(-1) A = 0.024427 B = 0.007324 C = 0.006207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.976602 B = 3822.336639 C = 4510.075529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.140 6.140 3 C -0.084 4.084 4 C -0.133 4.133 5 C -0.091 4.091 6 C -0.054 4.054 7 Cl -0.075 7.075 8 C -0.069 4.069 9 C 0.227 3.773 10 H 0.050 0.950 11 N -0.836 5.836 12 C -0.498 4.498 13 H 0.022 0.978 14 C 0.030 3.970 15 N -0.951 5.951 16 Si 0.920 3.080 17 H -0.303 1.303 18 H -0.315 1.315 19 H -0.154 1.154 20 C -0.108 4.108 21 H 0.129 0.871 22 H 0.092 0.908 23 H 0.098 0.902 24 H 0.163 0.837 25 H 0.157 0.843 26 H 0.336 0.664 27 H 0.332 0.668 28 H 0.261 0.739 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.916 -7.860 -10.208 20.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.102 5.898 3 C -0.197 4.197 4 C -0.157 4.157 5 C -0.111 4.111 6 C -0.084 4.084 7 Cl -0.046 7.046 8 C -0.073 4.073 9 C 0.117 3.883 10 H 0.068 0.932 11 N -0.367 5.367 12 C -0.536 4.536 13 H 0.040 0.960 14 C -0.169 4.169 15 N -0.590 5.590 16 Si 0.745 3.255 17 H -0.231 1.231 18 H -0.244 1.244 19 H -0.074 1.074 20 C -0.132 4.132 21 H 0.147 0.853 22 H 0.111 0.889 23 H 0.117 0.883 24 H 0.181 0.819 25 H 0.174 0.826 26 H 0.151 0.849 27 H 0.145 0.855 28 H 0.069 0.931 29 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.505 -8.290 -9.967 19.454 hybrid contribution -0.653 1.364 0.222 1.528 sum -15.158 -6.927 -9.746 19.306 Atomic orbital electron populations 1.23819 0.91163 1.08754 1.06764 1.85580 1.10341 1.01475 1.92452 1.21896 0.96136 0.98083 1.03543 1.21335 0.99493 0.91465 1.03396 1.21196 0.93979 0.97001 0.98943 1.21017 0.94913 0.85060 1.07413 1.98340 1.94801 1.14579 1.96848 1.20922 0.98088 0.92814 0.95511 1.18308 0.83516 0.91974 0.94551 0.93210 1.59705 1.58928 1.12027 1.06062 1.20677 0.96780 1.45465 0.90690 0.95975 1.25788 1.00160 0.92976 0.97931 1.70098 1.18927 1.47851 1.22174 0.86451 0.75377 0.79049 0.84582 1.23117 1.24356 1.07421 1.20567 0.95412 0.94529 1.02646 0.85310 0.88877 0.88329 0.81938 0.82559 0.84900 0.85501 0.93055 0.85134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.15 113.37 1.04 -0.69 15 2 S -0.14 -3.21 22.56 -56.49 -1.27 -4.49 15 3 C -0.08 -2.42 6.11 22.62 0.14 -2.28 15 4 C -0.13 -3.34 9.36 22.41 0.21 -3.13 15 5 C -0.09 -2.59 9.82 22.27 0.22 -2.37 15 6 C -0.05 -1.98 6.32 22.34 0.14 -1.84 15 7 Cl -0.07 -2.81 27.38 -2.72 -0.07 -2.88 15 8 C -0.07 -2.70 4.98 -19.86 -0.10 -2.80 15 9 C 0.23 10.17 1.86 43.42 0.08 10.25 15 10 H 0.05 2.32 6.54 -2.39 -0.02 2.31 15 11 N -0.84 -32.57 5.42 -174.95 -0.95 -33.52 15 12 C -0.50 -28.11 9.29 25.60 0.24 -27.87 15 13 H 0.02 1.42 7.98 -2.91 -0.02 1.40 15 14 C 0.03 1.76 5.47 84.65 0.46 2.23 15 15 N -0.95 -61.04 13.96 21.45 0.30 -60.74 15 16 Si 0.92 45.16 26.94 68.60 1.85 47.01 15 17 H -0.30 -15.14 7.11 99.48 0.71 -14.43 15 18 H -0.32 -15.98 7.11 99.48 0.71 -15.27 15 19 H -0.15 -6.60 5.17 99.48 0.51 -6.08 15 20 C -0.11 -3.73 9.01 22.41 0.20 -3.53 15 21 H 0.13 1.10 8.14 -2.39 -0.02 1.08 15 22 H 0.09 1.08 7.75 -2.39 -0.02 1.06 15 23 H 0.10 1.00 7.75 -2.39 -0.02 0.99 15 24 H 0.16 2.76 5.88 -2.91 -0.02 2.74 15 25 H 0.16 3.50 8.06 -2.91 -0.02 3.47 15 26 H 0.34 12.75 7.20 -89.70 -0.65 12.11 15 27 H 0.33 10.79 9.06 -89.69 -0.81 9.97 15 28 H 0.26 15.94 8.31 -92.71 -0.77 15.17 15 29 H 0.13 4.40 6.28 -2.91 -0.02 4.38 15 Total: -1.00 -69.79 269.98 2.02 -67.76 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -0.46 Total: 18.90 kcal Atomic # 6 Polarization: -34.68 SS G_CDS: 2.63 Total: -32.05 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -0.65 Total: -94.25 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.85 Total: 47.01 kcal Atomic # 16 Polarization: -3.21 SS G_CDS: -1.27 Total: -4.49 kcal Atomic # 17 Polarization: -2.81 SS G_CDS: -0.07 Total: -2.88 kcal Total: -69.79 2.02 -67.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260319065.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.679 kcal (2) G-P(sol) polarization free energy of solvation -69.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds