Wall clock time and date at job start Mon Mar 30 2020 07:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38250 * 119.97993 * 2 1 4 4 C 1.38184 * 120.03655 * 180.02562 * 3 2 1 5 5 C 1.38486 * 120.00456 * 359.97438 * 4 3 2 6 6 F 1.35099 * 120.02202 * 180.02562 * 5 4 3 7 7 C 1.38420 * 119.95621 * 359.97438 * 5 4 3 8 8 C 1.50709 * 120.01325 * 180.02562 * 7 5 4 9 9 H 1.09002 * 109.46972 * 180.02562 * 8 7 5 10 10 C 1.50695 * 109.47428 * 60.00092 * 8 7 5 11 11 H 1.08005 * 119.99558 * 354.55837 * 10 8 7 12 12 C 1.37870 * 120.00172 * 174.55878 * 10 8 7 13 13 N 1.31517 * 120.00200 * 352.01614 * 12 10 8 14 14 Si 1.86802 * 120.00199 * 172.01421 * 12 10 8 15 15 H 1.48500 * 109.46911 * 59.99726 * 14 12 10 16 16 H 1.48497 * 109.47554 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47075 * 300.00315 * 14 12 10 18 18 C 1.53001 * 109.47209 * 299.99883 * 8 7 5 19 19 N 1.46902 * 109.47000 * 295.56854 * 18 8 7 20 20 C 1.38327 * 119.96855 * 0.27826 * 7 5 4 21 21 Cl 1.73598 * 120.00433 * 179.70042 * 20 7 5 22 22 H 1.08996 * 109.47376 * 89.99575 * 1 2 3 23 23 H 1.09005 * 109.46757 * 209.99379 * 1 2 3 24 24 H 1.09004 * 109.47230 * 329.99129 * 1 2 3 25 25 H 1.07995 * 119.97740 * 0.03377 * 3 2 1 26 26 H 1.07994 * 119.99506 * 180.02562 * 4 3 2 27 27 H 0.96995 * 120.00110 * 179.97438 * 13 12 10 28 28 H 1.08994 * 109.47153 * 175.56621 * 18 8 7 29 29 H 1.09003 * 109.47282 * 55.56191 * 18 8 7 30 30 H 1.00906 * 111.00102 * 174.60543 * 19 18 8 31 31 H 1.00898 * 111.00099 * 298.56204 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1975 0.0000 4 6 3.5797 1.1989 -0.0005 5 6 4.2734 0.0003 -0.0005 6 9 5.6243 0.0012 -0.0005 7 6 3.5816 -1.1987 0.0005 8 6 4.3353 -2.5038 0.0011 9 1 3.6270 -3.3323 0.0015 10 6 5.2021 -2.5828 1.2312 11 1 5.2747 -1.7347 1.8960 12 6 5.9025 -3.7377 1.5081 13 7 5.6951 -4.8204 0.7908 14 14 7.1459 -3.7646 2.9018 15 1 6.4628 -3.4439 4.1808 16 1 7.7590 -5.1141 2.9923 17 1 8.2048 -2.7569 2.6400 18 6 5.2144 -2.5856 -1.2484 19 7 4.3629 -2.6156 -2.4451 20 6 2.1984 -1.1983 -0.0042 21 17 1.3299 -2.7015 -0.0107 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3634 0.8899 0.5140 25 1 1.6571 2.1324 0.0006 26 1 4.1186 2.1347 -0.0001 27 1 6.1881 -5.6328 0.9854 28 1 5.8180 -3.4923 -1.2092 29 1 5.8688 -1.7149 -1.2900 30 1 4.9196 -2.5810 -3.2860 31 1 3.7629 -3.4268 -2.4418 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260336511.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:22 Heat of formation + Delta-G solvation = -40.371308 kcal Electronic energy + Delta-G solvation = -17415.834907 eV Core-core repulsion = 14443.877929 eV Total energy + Delta-G solvation = -2971.956978 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 257.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.02141 -38.85496 -35.75322 -35.29680 -32.19812 -31.95319 -30.73929 -27.62690 -26.07409 -23.93875 -22.25793 -21.60541 -19.36409 -16.99383 -16.77753 -15.76480 -15.09848 -14.79821 -14.58334 -14.14429 -13.95561 -13.54081 -13.44249 -13.14958 -12.48203 -12.19689 -12.04088 -11.73472 -11.69402 -11.27339 -11.07280 -10.90879 -10.65975 -10.55003 -10.31805 -9.93374 -9.53544 -9.23398 -8.39231 -8.02876 -7.79077 -7.62717 -6.08691 -4.10514 1.61600 1.82325 2.79101 3.31044 3.34876 3.39323 4.07019 4.41991 4.97185 5.12381 5.21934 5.30899 5.46736 5.60276 5.71596 5.82381 6.01455 6.05650 6.23719 6.47123 6.59414 6.71644 6.74179 6.87066 6.99335 7.36168 7.47881 7.78408 7.87628 8.03026 8.30205 8.38475 8.90958 9.52024 10.99649 Molecular weight = 257.07amu Principal moments of inertia in cm(-1) A = 0.021420 B = 0.008772 C = 0.007968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.847157 B = 3191.209282 C = 3513.113435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.097 4.097 3 C -0.112 4.112 4 C -0.157 4.157 5 C 0.109 3.891 6 F -0.127 7.127 7 C -0.033 4.033 8 C 0.076 3.924 9 H 0.064 0.936 10 C -0.508 4.508 11 H 0.057 0.943 12 C 0.067 3.933 13 N -0.888 5.888 14 Si 0.891 3.109 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.275 1.275 18 C 0.066 3.934 19 N -0.856 5.856 20 C -0.013 4.013 21 Cl -0.063 7.063 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.127 0.873 26 H 0.128 0.872 27 H 0.262 0.738 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.320 0.680 31 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.304 7.895 -3.273 11.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.098 4.098 3 C -0.130 4.130 4 C -0.176 4.176 5 C 0.090 3.910 6 F -0.105 7.105 7 C -0.034 4.034 8 C 0.057 3.943 9 H 0.082 0.918 10 C -0.546 4.546 11 H 0.075 0.925 12 C -0.135 4.135 13 N -0.526 5.526 14 Si 0.718 3.282 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.201 1.201 18 C -0.064 4.064 19 N -0.383 5.383 20 C -0.040 4.040 21 Cl -0.034 7.034 22 H 0.088 0.912 23 H 0.089 0.911 24 H 0.083 0.917 25 H 0.145 0.855 26 H 0.146 0.854 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.130 0.870 31 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.561 8.249 -2.995 11.584 hybrid contribution 1.509 -1.073 0.531 1.926 sum -6.052 7.176 -2.464 9.706 Atomic orbital electron populations 1.20767 0.90874 1.02818 1.02295 1.19639 0.96283 0.91513 1.02411 1.20466 0.92916 0.96782 1.02880 1.21075 0.94904 0.96900 1.04714 1.17290 0.77459 0.93136 1.03149 1.91473 1.28341 1.97134 1.93555 1.20351 0.91881 0.97453 0.93756 1.18021 0.94313 0.88426 0.93506 0.91838 1.20923 1.27039 0.99409 1.07250 0.92510 1.24901 0.96951 0.95165 0.96460 1.69936 1.41034 1.01051 1.40535 0.86662 0.81853 0.77073 0.82570 1.20152 1.21269 1.20076 1.22019 0.95203 1.00543 0.88683 1.59006 1.26282 1.48282 1.04768 1.20349 0.91454 0.86351 1.05862 1.98313 1.75640 1.32610 1.96801 0.91245 0.91117 0.91745 0.85465 0.85443 0.92837 0.93278 0.92778 0.87006 0.85781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 9.61 36.00 0.35 -1.07 16 2 C -0.10 -1.60 5.88 -104.58 -0.62 -2.21 16 3 C -0.11 -1.70 9.70 -39.60 -0.38 -2.08 16 4 C -0.16 -2.65 10.03 -39.51 -0.40 -3.05 16 5 C 0.11 2.28 6.62 -39.42 -0.26 2.01 16 6 F -0.13 -2.82 14.28 2.25 0.03 -2.79 16 7 C -0.03 -0.72 4.47 -104.52 -0.47 -1.19 16 8 C 0.08 1.88 1.81 -92.92 -0.17 1.71 16 9 H 0.06 1.67 6.13 -51.93 -0.32 1.35 16 10 C -0.51 -13.85 7.58 -34.45 -0.26 -14.11 16 11 H 0.06 1.58 7.43 -52.48 -0.39 1.19 16 12 C 0.07 1.85 5.19 -17.82 -0.09 1.75 16 13 N -0.89 -24.90 12.08 55.43 0.67 -24.23 16 14 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 C 0.07 1.54 5.91 -3.82 -0.02 1.51 16 19 N -0.86 -16.91 9.30 -10.37 -0.10 -17.01 16 20 C -0.01 -0.26 6.31 -39.51 -0.25 -0.51 16 21 Cl -0.06 -1.18 25.35 -51.86 -1.31 -2.49 16 22 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 23 H 0.07 0.92 6.91 -51.93 -0.36 0.56 16 24 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 25 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 26 H 0.13 1.80 8.06 -52.49 -0.42 1.37 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.05 1.27 6.75 -51.93 -0.35 0.92 16 29 H 0.05 1.30 6.20 -51.93 -0.32 0.97 16 30 H 0.32 5.52 9.08 -39.29 -0.36 5.16 16 31 H 0.33 6.44 9.05 -39.29 -0.36 6.09 16 LS Contribution 277.15 15.07 4.18 4.18 Total: -1.00 -28.55 277.15 -7.40 -35.95 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -3.27 Total: 7.26 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -2.57 Total: -17.22 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 0.57 Total: -41.23 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.03 Total: -2.79 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -1.31 Total: -2.49 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.55 -7.40 -35.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260336511.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.422 kcal (2) G-P(sol) polarization free energy of solvation -28.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds